UHGV-0114796

Genome information

Genome length 42,937 bps

CDS count 72

Completeness 100.00% (complete)

geNomad score 0.9729

Prediction confidence Confident

Genome information
Genome ID	UHGV-0114796
vOTU ID	vOTU-005309
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_293939
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9729
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	69.12
Jumbo phage	No

Genome content
Genome length	42,937 bps
GC content	29.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	90.52%
Average CDS length	541.75 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0114796_2	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0114796_2	UniRef90	UniRef90_A0A1F1L7W3	DnaA_N domain-containing protein	NA
UHGV-0114796_2	eggNOG-mapper	1294142.CINTURNW_1012	Transcriptional regulator	NA
UHGV-0114796_2	Pfam	PF11638	DnaA N-terminal domain	DnaA_N
UHGV-0114796_2	COG	COG2188	DNA-binding transcriptional regulator, GntR family	NA
UHGV-0114796_2	Structural annotation	PF09681, PF17214, MF_01819, TIGR01714, COG5529	NA	NA
UHGV-0114796_3	PHROG	phrog_674	NA	unknown function
UHGV-0114796_3	UniRef90	UniRef90_UPI001159171A	NA	NA
UHGV-0114796_3	eggNOG-mapper	1280689.AUJC01000003_gene937	NA	NA
UHGV-0114796_3	Pfam	PF07083	NA	DUF1351
UHGV-0114796_3	Structural annotation	PF07083	NA	NA
UHGV-0114796_4	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0114796_4	UniRef90	UniRef90_UPI001157AA47	ERF family protein	NA
UHGV-0114796_4	eggNOG-mapper	1415775.U729_2586	ERF superfamily	NA
UHGV-0114796_4	Pfam	PF04404	ERF superfamily	ERF
UHGV-0114796_4	Structural annotation	PF04404	NA	NA
UHGV-0114796_8	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0114796_8	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0114796_8	UniRef90	UniRef90_UPI000C0842EE	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0114796_8	eggNOG-mapper	536232.CLM_2680	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0114796_8	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0114796_8	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0114796_8	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0114796_8	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0114796_8	Structural annotation	PF04542, PF08281, MF_00962, NF004471, COG1191	NA	NA
UHGV-0114796_9	UniRef90	UniRef90_UPI000C0827A1	TFIIB-type zinc ribbon-containing protein	NA
UHGV-0114796_10	PHROG	phrog_5765	NA	unknown function
UHGV-0114796_10	UniRef90	UniRef90_A0A845LYH5	BC1881 family protein	NA
UHGV-0114796_10	NCBIFam	NF033495.1	BC1881 family protein	NA
UHGV-0114796_12	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0114796_12	UniRef90	UniRef90_UPI0018AB50F8	ORF6C domain-containing protein	NA
UHGV-0114796_12	eggNOG-mapper	318464.IO99_00440	ORF6N domain	NA
UHGV-0114796_12	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0114796_12	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0114796_12	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0114796_12	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0114796_14	UniRef90	UniRef90_A0A1J1CU94	Helix-turn-helix family protein	NA
UHGV-0114796_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0114796_15	UniRef90	UniRef90_UPI001897B42B	helix-turn-helix transcriptional regulator	NA
UHGV-0114796_15	eggNOG-mapper	931276.Cspa_c18000	Helix-turn-helix XRE-family like proteins	NA
UHGV-0114796_15	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0114796_15	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0114796_16	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0114796_16	PHROG	phrog_95	integrase	integration and excision
UHGV-0114796_16	UniRef90	UniRef90_A0A2H4J068	Putative resolvase	NA
UHGV-0114796_16	eggNOG-mapper	1211817.CCAT010000072_gene1162	Resolvase, N terminal domain	NA
UHGV-0114796_16	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0114796_16	Pfam	PF07508	Recombinase	Recombinase
UHGV-0114796_16	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0114796_16	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0114796_16	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0114796_17	COG	COG0621	tRNA A37 methylthiotransferase MiaB	NA
UHGV-0114796_18	PHROG	phrog_6203	NA	unknown function
UHGV-0114796_18	UniRef90	UniRef90_A0A6M1WSA2	ATP-binding protein	NA
UHGV-0114796_18	eggNOG-mapper	1235813.JCM10003_2628	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	NA
UHGV-0114796_18	Pfam	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	HATPase_c_3
UHGV-0114796_18	COG	COG0323	DNA mismatch repair ATPase MutL	NA
UHGV-0114796_18	Structural annotation	MF_00505, NF003555, COG0323	NA	NA
UHGV-0114796_19	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0114796_19	PHROG	phrog_3088	amidase	lysis
UHGV-0114796_19	UniRef90	UniRef90_V9H372	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0114796_19	eggNOG-mapper	457396.CSBG_01063	Ami_2	NA
UHGV-0114796_19	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0114796_19	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0114796_20	UniRef90	UniRef90_A0A1C6KNG2	Small integral membrane protein	NA
UHGV-0114796_20	eggNOG-mapper	1041504.RATSFB_0394	COG5546 Small integral membrane protein	NA
UHGV-0114796_20	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0114796_20	COG	COG5546	NA	NA
UHGV-0114796_21	PHROG	phrog_1193	hemolysin	other
UHGV-0114796_21	UniRef90	UniRef90_UPI0017834AC0	hemolysin XhlA family protein	NA
UHGV-0114796_21	eggNOG-mapper	318464.IO99_03750	Haemolysin XhlA	NA
UHGV-0114796_21	Pfam	PF10779	Haemolysin XhlA	XhlA
UHGV-0114796_22	PHROG	phrog_28838	NA	unknown function
UHGV-0114796_22	UniRef90	UniRef90_UPI0017843106	BppU family phage baseplate upper protein	NA
UHGV-0114796_22	eggNOG-mapper	1217713.F993_01490	Converts 4-O-beta-D-mannopyranosyl-D-glucopyranose (Man- Glc) to mannose 1-phosphate (Man1P) and glucose	NA
UHGV-0114796_22	COG	COG2152	NA	NA
UHGV-0114796_24	PHROG	phrog_7043	tail protein	tail
UHGV-0114796_24	UniRef90	UniRef90_UPI000DD08AA5	phage tail protein	NA
UHGV-0114796_24	eggNOG-mapper	1499683.CCFF01000005_gene80	Phage minor structural protein	NA
UHGV-0114796_24	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0114796_24	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0114796_24	COG	COG4926	Phage-related protein	NA
UHGV-0114796_25	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0114796_25	UniRef90	UniRef90_UPI000DCFB6E8	phage tail family protein	NA
UHGV-0114796_25	eggNOG-mapper	573061.Clocel_0222	tail component	NA
UHGV-0114796_25	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0114796_25	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0114796_25	COG	COG4722	Phage-related protein YomH	NA
UHGV-0114796_25	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0114796_26	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0114796_26	UniRef90	UniRef90_A0A386PK18	Phage tail tape measure protein	NA
UHGV-0114796_26	eggNOG-mapper	411460.RUMTOR_02094	Phage-related minor tail protein	NA
UHGV-0114796_26	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0114796_26	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0114796_26	COG	COG4487	NA	NA
UHGV-0114796_26	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0114796_27	UniRef90	UniRef90_UPI001368CC7F	NA	NA
UHGV-0114796_27	eggNOG-mapper	931276.Cspa_c35610	NA	NA
UHGV-0114796_27	Pfam	PF09858	NA	DUF2085
UHGV-0114796_27	COG	COG3815	NA	NA
UHGV-0114796_27	Structural annotation	PF09858, COG3815	NA	NA
UHGV-0114796_28	UniRef90	UniRef90_A0A401ULH8	LITAF domain-containing protein	NA
UHGV-0114796_28	eggNOG-mapper	1196322.A370_00882	NA	NA
UHGV-0114796_28	Structural annotation	PF02701	NA	NA
UHGV-0114796_29	PHROG	phrog_706	NA	unknown function
UHGV-0114796_29	UniRef90	UniRef90_A0A1C6KPE4	Bacteriophage Gp15 protein	NA
UHGV-0114796_29	eggNOG-mapper	1499683.CCFF01000017_gene2567	Bacteriophage Gp15 protein	NA
UHGV-0114796_29	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0114796_29	Structural annotation	PF06854	NA	NA
UHGV-0114796_30	PHROG	phrog_4450	NA	unknown function
UHGV-0114796_30	UniRef90	UniRef90_UPI001C60AEBB	AP endonuclease	NA
UHGV-0114796_30	eggNOG-mapper	545697.HMPREF0216_02856	NA	NA
UHGV-0114796_30	Pfam	PF20378	NA	DUF6673
UHGV-0114796_30	Structural annotation	PF20378	NA	NA
UHGV-0114796_31	PHROG	phrog_3099	NA	unknown function
UHGV-0114796_31	eggNOG-mapper	545697.HMPREF0216_02855	NA	NA
UHGV-0114796_31	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0114796_32	PHROG	phrog_3266	tail completion	connector
UHGV-0114796_32	UniRef90	UniRef90_UPI001F261AF5	chloramphenicol resistance protein	NA
UHGV-0114796_32	eggNOG-mapper	1499683.CCFF01000017_gene2570	NA	NA
UHGV-0114796_32	Structural annotation	PF12691	NA	NA
UHGV-0114796_33	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0114796_33	UniRef90	UniRef90_A0A1C6KY51	Minor capsid protein	NA
UHGV-0114796_33	eggNOG-mapper	1499683.CCFF01000017_gene2571	Minor capsid protein	NA
UHGV-0114796_33	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0114796_33	Structural annotation	PF11114	NA	NA
UHGV-0114796_34	PHROG	phrog_3366	NA	unknown function
UHGV-0114796_34	eggNOG-mapper	1540257.JQMW01000013_gene739	NA	NA
UHGV-0114796_34	Pfam	PF20536	NA	DUF6751
UHGV-0114796_34	Structural annotation	PF20536	NA	NA
UHGV-0114796_35	UniRef90	UniRef90_UPI0013C967CA	phage head-tail connector protein	NA
UHGV-0114796_35	eggNOG-mapper	1540257.JQMW01000013_gene740	NA	NA
UHGV-0114796_36	UniRef90	UniRef90_UPI00164B0099	collagen-like protein	NA
UHGV-0114796_37	PHROG	phrog_29	major head protein	head and packaging
UHGV-0114796_37	UniRef90	UniRef90_A0A1C6KXX0	Phage major capsid protein E	NA
UHGV-0114796_37	eggNOG-mapper	1280692.AUJL01000004_gene846	Phage major capsid protein E	NA
UHGV-0114796_37	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0114796_37	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0114796_38	PHROG	phrog_909	major head protein	head and packaging
UHGV-0114796_38	UniRef90	UniRef90_UPI001D2572A1	head decoration protein	NA
UHGV-0114796_38	eggNOG-mapper	1280692.AUJL01000004_gene847	NA	NA
UHGV-0114796_39	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0114796_39	UniRef90	UniRef90_UPI001897FD55	NA	NA
UHGV-0114796_39	eggNOG-mapper	1280692.AUJL01000004_gene848	NA	NA
UHGV-0114796_39	Pfam	PF14265	NA	DUF4355
UHGV-0114796_39	Structural annotation	PF14265	NA	NA
UHGV-0114796_41	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0114796_41	UniRef90	UniRef90_UPI000DD075D9	minor capsid protein	NA
UHGV-0114796_41	eggNOG-mapper	1540257.JQMW01000013_gene746	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0114796_41	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0114796_41	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0114796_41	COG	COG2369	NA	NA
UHGV-0114796_41	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0114796_42	PHROG	phrog_64	portal protein	head and packaging
UHGV-0114796_42	UniRef90	UniRef90_UPI000DCF7CFA	phage portal protein	NA
UHGV-0114796_42	eggNOG-mapper	1280692.AUJL01000004_gene853	portal protein, SPP1 Gp6-like	NA
UHGV-0114796_42	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0114796_42	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0114796_43	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0114796_43	UniRef90	UniRef90_UPI000DD0DAA8	terminase	NA
UHGV-0114796_43	eggNOG-mapper	1415774.U728_734	chromosome segregation	NA
UHGV-0114796_43	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0114796_43	COG	COG5410	NA	NA
UHGV-0114796_43	Structural annotation	PF17289, PF03354, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0114796_44	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-0114796_44	UniRef90	UniRef90_UPI000DD08350	phBC6A51 family helix-turn-helix protein	NA
UHGV-0114796_44	eggNOG-mapper	1540257.JQMW01000013_gene750	NA	NA
UHGV-0114796_44	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-0114796_44	Structural annotation	PF13022, COG3677	NA	NA
UHGV-0114796_46	eggNOG-mapper	1280692.AUJL01000025_gene2086	NA	NA
UHGV-0114796_47	eggNOG-mapper	431943.CKL_2352	NA	NA
UHGV-0114796_48	PHROG	phrog_9628	NA	unknown function
UHGV-0114796_48	UniRef90	UniRef90_A0A3P6KN20	Transcriptional regulator	NA
UHGV-0114796_48	eggNOG-mapper	536233.CLO_1415	NA	NA
UHGV-0114796_48	Structural annotation	PF06056, COG2771	NA	NA
UHGV-0114796_49	PHROG	phrog_38492	NA	unknown function
UHGV-0114796_49	UniRef90	UniRef90_UPI00115A7830	RNA polymerase subunit sigma	NA
UHGV-0114796_49	eggNOG-mapper	536233.CLO_0875	Helix-turn-helix	NA
UHGV-0114796_50	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0114796_50	UniRef90	UniRef90_A0A386PIQ9	ERCC4-type nuclease	NA
UHGV-0114796_50	eggNOG-mapper	1345695.CLSA_c30130	ERCC4 domain	NA
UHGV-0114796_50	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0114796_50	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0114796_52	PHROG	phrog_98	NA	unknown function
UHGV-0114796_52	UniRef90	UniRef90_UPI0008FB059C	YopX family protein	NA
UHGV-0114796_52	eggNOG-mapper	888055.HMPREF9015_01088	YopX protein	NA
UHGV-0114796_52	Pfam	PF09643	YopX protein	YopX
UHGV-0114796_52	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0114796_52	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0114796_54	PHROG	phrog_98	NA	unknown function
UHGV-0114796_54	UniRef90	UniRef90_UPI001E5F0190	YopX family protein	NA
UHGV-0114796_54	eggNOG-mapper	1158614.I592_01110	YopX protein	NA
UHGV-0114796_54	Pfam	PF09643	YopX protein	YopX
UHGV-0114796_55	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0114796_55	UniRef90	UniRef90_A0A844JSD9	MazG domain-containing protein	NA
UHGV-0114796_55	eggNOG-mapper	1499683.CCFF01000005_gene41	NA	NA
UHGV-0114796_55	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0114796_57	eggNOG-mapper	1443125.Z962_p0038	NA	NA
UHGV-0114796_58	Structural annotation	PF20111, TIGR00686	NA	NA
UHGV-0114796_59	PHROG	phrog_28936	NA	unknown function
UHGV-0114796_59	eggNOG-mapper	573061.Clocel_3563	NA	NA
UHGV-0114796_59	Structural annotation	PF11645, MF_01490, NF040854	NA	NA
UHGV-0114796_60	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0114796_60	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0114796_60	UniRef90	UniRef90_UPI000DD0017A	single-stranded DNA-binding protein	NA
UHGV-0114796_60	eggNOG-mapper	457396.CSBG_03291	Single-stranded DNA-binding protein	NA
UHGV-0114796_60	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0114796_60	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0114796_60	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0114796_60	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0114796_60	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0114796_62	eggNOG-mapper	1414720.CBYM010000001_gene686	NA	NA
UHGV-0114796_63	eggNOG-mapper	1196322.A370_02042	NA	NA
UHGV-0114796_64	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0114796_64	eggNOG-mapper	1280692.AUJL01000025_gene2095	NA	NA
UHGV-0114796_64	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0114796_65	PHROG	phrog_31569	NA	unknown function
UHGV-0114796_66	PHROG	phrog_28957	NA	unknown function
UHGV-0114796_69	UniRef90	UniRef90_UPI0015D49531	transcriptional regulator	NA
UHGV-0114796_70	PHROG	phrog_1389	NA	unknown function
UHGV-0114796_70	eggNOG-mapper	1280692.AUJL01000025_gene2094	NA	NA
UHGV-0114796_70	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0114796_72	PHROG	phrog_3497	NA	unknown function
UHGV-0114796_72	UniRef90	UniRef90_UPI001EEE3B43	HNH endonuclease	NA
UHGV-0114796_72	eggNOG-mapper	1196322.A370_02067	NA	NA
UHGV-0114796_72	Structural annotation	COG5126	NA	NA