UHGV-0114839

Genome information

Genome length 19,672 bps

CDS count 26

Completeness 99.90% (high-quality)

geNomad score 0.9591

Prediction confidence Confident

Genome information
Genome ID	UHGV-0114839
vOTU ID	vOTU-059824
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_290053
BioSample	SAMEA4378328
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9591
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	3.22
Jumbo phage	No

Genome content
Genome length	19,672 bps
GC content	39.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	26
CDS density	87.52%
Average CDS length	664.27 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0114839_1	KOfam	K04772	degQ, hhoA; serine protease DegQ [EC:3.4.21.-]	NA
UHGV-0114839_1	PHROG	phrog_11383	NA	unknown function
UHGV-0114839_1	UniRef90	UniRef90_A0A174RS33	Periplasmic pH-dependent serine endoprotease DegQ	NA
UHGV-0114839_1	eggNOG-mapper	411459.RUMOBE_01403	COG COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain	NA
UHGV-0114839_1	Pfam	PF13365	Trypsin-like peptidase domain	Trypsin_2
UHGV-0114839_1	Pfam	PF13180	PDZ domain	PDZ_2
UHGV-0114839_1	COG	COG0265	Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain	NA
UHGV-0114839_2	KOfam	K14059	int; integrase	NA
UHGV-0114839_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0114839_2	UniRef90	UniRef90_A0A173XJ70	Integrase	NA
UHGV-0114839_2	eggNOG-mapper	411459.RUMOBE_01402	Belongs to the 'phage' integrase family	NA
UHGV-0114839_2	Pfam	PF02920	DNA binding domain of tn916 integrase	Integrase_DNA
UHGV-0114839_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0114839_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0114839_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0114839_2	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0114839_6	eggNOG-mapper	411459.RUMOBE_01397	NA	NA
UHGV-0114839_7	UniRef90	UniRef90_A0A174ECN7	XRE family transcriptional regulator	NA
UHGV-0114839_7	eggNOG-mapper	767817.Desgi_2502	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0114839_8	PHROG	phrog_34504	NA	unknown function
UHGV-0114839_8	UniRef90	UniRef90_A0A1G9MNG4	Organiser of macrodomain of Terminus of chromosome	NA
UHGV-0114839_8	eggNOG-mapper	563038.HMPREF0851_00256	NA	NA
UHGV-0114839_9	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0114839_9	UniRef90	UniRef90_A0A374DQW9	Transcriptional regulator	NA
UHGV-0114839_9	eggNOG-mapper	411470.RUMGNA_03232	NA	NA
UHGV-0114839_9	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0114839_9	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0114839_9	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0114839_9	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0114839_10	UniRef90	UniRef90_UPI0009C032EA	helix-turn-helix domain-containing protein	NA
UHGV-0114839_10	eggNOG-mapper	411459.RUMOBE_01390	NA	NA
UHGV-0114839_11	Structural annotation	PF20794	NA	NA
UHGV-0114839_14	eggNOG-mapper	1211814.CAPG01000097_gene4376	NA	NA
UHGV-0114839_15	eggNOG-mapper	411459.RUMOBE_01385	NA	NA
UHGV-0114839_16	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0114839_16	UniRef90	UniRef90_A0A174LLY7	Phage-related protein	NA
UHGV-0114839_16	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0114839_16	COG	COG5412	Phage-related protein	NA
UHGV-0114839_17	PHROG	phrog_706	NA	unknown function
UHGV-0114839_17	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0114839_17	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0114839_17	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0114839_17	Structural annotation	PF06854	NA	NA
UHGV-0114839_18	PHROG	phrog_11299	NA	unknown function
UHGV-0114839_18	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-0114839_18	Structural annotation	PF10666	NA	NA
UHGV-0114839_20	eggNOG-mapper	397291.C804_06335	NA	NA
UHGV-0114839_22	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0114839_22	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0114839_22	UniRef90	UniRef90_A0A454HE40	SF4 helicase domain-containing protein	NA
UHGV-0114839_22	eggNOG-mapper	1256908.HMPREF0373_00663	NA	NA
UHGV-0114839_22	Pfam	PF13481	AAA domain	AAA_25
UHGV-0114839_22	COG	COG0305	Replicative DNA helicase	NA
UHGV-0114839_22	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-0114839_23	PHROG	phrog_16826	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0114839_23	UniRef90	UniRef90_A0A454HE13	Phage_rep_O domain-containing protein	NA
UHGV-0114839_23	eggNOG-mapper	1230341.MJ3_13494	Bacteriophage replication protein O	NA
UHGV-0114839_23	Pfam	PF04492	Bacteriophage replication protein O	Phage_rep_O
UHGV-0114839_23	NCBIFam	TIGR01610.1	phage replication protein O, N-terminal domain	NA
UHGV-0114839_23	Structural annotation	PF04492, MF_01177, TIGR01610, COG3388	NA	NA
UHGV-0114839_24	eggNOG-mapper	1298920.KI911353_gene2059	NA	NA
UHGV-0114839_24	Structural annotation	PF08220, TIGR00122, COG1654	NA	NA
UHGV-0114839_25	UniRef90	UniRef90_UPI000E53E799	NA	NA
UHGV-0114839_25	Pfam	PF20063	NA	DUF6462
UHGV-0114839_25	Structural annotation	PF20063, TIGR01764, COG3311	NA	NA
UHGV-0114839_26	UniRef90	UniRef90_A0A3E5AA55	HTH cro/C1-type domain-containing protein	NA