UHGV-0114889

Genome information

Genome length 35,568 bps

CDS count 54

Completeness 97.88% (high-quality)

geNomad score 0.9690

Prediction confidence Confident

Genome information
Genome ID	UHGV-0114889
vOTU ID	vOTU-080995
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_284125
BioSample	SAMEA4378278
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.88% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9690
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.44
Jumbo phage	No

Genome content
Genome length	35,568 bps
GC content	52.79%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	93.43%
Average CDS length	620.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0114889_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0114889_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0114889_1	UniRef90	UniRef90_A0A414NZS9	Recombinase family protein	NA
UHGV-0114889_1	eggNOG-mapper	927704.SELR_10990	NA	NA
UHGV-0114889_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0114889_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0114889_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0114889_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0114889_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0114889_3	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0114889_3	UniRef90	UniRef90_UPI001D02A556	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0114889_3	eggNOG-mapper	1042163.BRLA_c030830	IrrE N-terminal-like domain	NA
UHGV-0114889_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0114889_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0114889_3	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0114889_3	Structural annotation	PF06114, PF01381, MF_00584, NF038139, COG2856, COG1476	NA	NA
UHGV-0114889_4	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0114889_4	UniRef90	UniRef90_UPI001D003B03	type II toxin-antitoxin system HicA family toxin	NA
UHGV-0114889_4	eggNOG-mapper	888060.HMPREF9081_0962	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0114889_4	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0114889_4	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0114889_4	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0114889_5	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0114889_5	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0114889_5	UniRef90	UniRef90_UPI001D0186D2	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0114889_5	eggNOG-mapper	888060.HMPREF9081_0963	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0114889_5	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0114889_5	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0114889_5	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0114889_7	PHROG	phrog_585	NA	unknown function
UHGV-0114889_7	UniRef90	UniRef90_UPI001D02D4A3	NA	NA
UHGV-0114889_7	eggNOG-mapper	862517.HMPREF9225_1672	NA	NA
UHGV-0114889_7	Pfam	PF10711	NA	DUF2513
UHGV-0114889_7	Structural annotation	PF10711, MF_01819, TIGR04176, COG1695	NA	NA
UHGV-0114889_8	Pfam	PF19865	NA	DUF6338
UHGV-0114889_8	Structural annotation	PF19865	NA	NA
UHGV-0114889_9	eggNOG-mapper	1273103.NM10_02427	competence protein COMEC	NA
UHGV-0114889_9	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-0114889_9	Structural annotation	PF02805	NA	NA
UHGV-0114889_10	PHROG	phrog_9699	NA	unknown function
UHGV-0114889_10	eggNOG-mapper	679201.HMPREF9334_00292	NA	NA
UHGV-0114889_12	Structural annotation	PF19865	NA	NA
UHGV-0114889_14	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0114889_14	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0114889_14	UniRef90	UniRef90_A0A414NZX1	XRE family transcriptional regulator	NA
UHGV-0114889_14	eggNOG-mapper	1273103.NM10_01229	Transcriptional	NA
UHGV-0114889_14	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0114889_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0114889_14	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0114889_14	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0114889_15	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0114889_15	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0114889_15	UniRef90	UniRef90_A0A414NZT5	XRE family transcriptional regulator	NA
UHGV-0114889_15	eggNOG-mapper	1273103.NM10_01224	sequence-specific DNA binding	NA
UHGV-0114889_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0114889_15	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0114889_15	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0114889_16	PHROG	phrog_15609	NA	unknown function
UHGV-0114889_18	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0114889_18	UniRef90	UniRef90_A0A414NZQ4	XRE family transcriptional regulator	NA
UHGV-0114889_18	eggNOG-mapper	877420.ATVW01000050_gene993	NA	NA
UHGV-0114889_18	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0114889_21	PHROG	phrog_398	NA	unknown function
UHGV-0114889_21	UniRef90	UniRef90_UPI0018C6CD3B	putative HNHc nuclease	NA
UHGV-0114889_21	eggNOG-mapper	585503.HMPREF7545_1716	Putative HNHc nuclease	NA
UHGV-0114889_21	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0114889_21	Structural annotation	PF16784	NA	NA
UHGV-0114889_22	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0114889_22	UniRef90	UniRef90_UPI0011C364A6	helix-turn-helix domain-containing protein	NA
UHGV-0114889_22	eggNOG-mapper	742765.HMPREF9457_03058	NA	NA
UHGV-0114889_22	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0114889_22	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0114889_22	Structural annotation	NF040939, COG3355	NA	NA
UHGV-0114889_23	PHROG	phrog_9804	NA	unknown function
UHGV-0114889_23	UniRef90	UniRef90_A0A3M0XFT2	Inhibitor_G39P domain-containing protein	NA
UHGV-0114889_23	eggNOG-mapper	1280706.AUJE01000046_gene1152	NA	NA
UHGV-0114889_23	Structural annotation	PF11417	NA	NA
UHGV-0114889_24	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0114889_24	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0114889_24	UniRef90	UniRef90_UPI001D02C67A	single-stranded DNA-binding protein	NA
UHGV-0114889_24	eggNOG-mapper	224324.aq_064	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0114889_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0114889_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0114889_24	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0114889_28	UniRef90	UniRef90_UPI001D011922	NA	NA
UHGV-0114889_28	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0114889_32	eggNOG-mapper	1123288.SOV_1c10600	NA	NA
UHGV-0114889_32	Structural annotation	TIGR01636	NA	NA
UHGV-0114889_33	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0114889_33	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0114889_33	UniRef90	UniRef90_A0A356UL78	HNH domain-containing protein	NA
UHGV-0114889_33	eggNOG-mapper	1089548.KI783301_gene3222	HNH endonuclease	NA
UHGV-0114889_33	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0114889_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0114889_33	Structural annotation	NF008448	NA	NA
UHGV-0114889_34	PHROG	phrog_1066	NA	unknown function
UHGV-0114889_34	eggNOG-mapper	1232428.CAVO010000003_gene1013	NA	NA
UHGV-0114889_34	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0114889_35	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0114889_35	UniRef90	UniRef90_UPI000F8DAF8B	terminase large subunit	NA
UHGV-0114889_35	eggNOG-mapper	1232428.CAVO010000003_gene1012	Phage Terminase	NA
UHGV-0114889_35	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0114889_35	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0114889_35	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0114889_35	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0114889_36	PHROG	phrog_12	portal protein	head and packaging
UHGV-0114889_36	UniRef90	UniRef90_UPI00142FCB51	phage portal protein	NA
UHGV-0114889_36	eggNOG-mapper	1232428.CAVO010000003_gene1011	Phage portal protein	NA
UHGV-0114889_36	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0114889_36	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0114889_36	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0114889_36	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0114889_37	KOfam	K06904	NA	NA
UHGV-0114889_37	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0114889_37	UniRef90	UniRef90_A0A412CHQ0	HK97 family phage prohead protease	NA
UHGV-0114889_37	eggNOG-mapper	1235755.ANAM01000006_gene2374	Caudovirus prohead serine protease	NA
UHGV-0114889_37	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0114889_37	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0114889_37	COG	COG3740	Phage head maturation protease	NA
UHGV-0114889_37	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0114889_38	PHROG	phrog_10	major head protein	head and packaging
UHGV-0114889_38	UniRef90	UniRef90_A0A412CI12	Phage major capsid protein	NA
UHGV-0114889_38	eggNOG-mapper	1232428.CAVO010000003_gene1009	phage major capsid protein, HK97 family	NA
UHGV-0114889_38	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0114889_38	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0114889_38	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0114889_38	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0114889_39	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0114889_39	UniRef90	UniRef90_UPI00195DB364	head-tail connector protein	NA
UHGV-0114889_39	eggNOG-mapper	634956.Geoth_0791	Phage gp6-like head-tail connector protein	NA
UHGV-0114889_39	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0114889_39	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0114889_39	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0114889_40	PHROG	phrog_25	head closure Hc1	connector
UHGV-0114889_40	UniRef90	UniRef90_UPI001648A1FB	phage head closure protein	NA
UHGV-0114889_40	eggNOG-mapper	1232428.CAVO010000003_gene1007	Phage head-tail joining protein	NA
UHGV-0114889_40	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0114889_40	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0114889_40	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0114889_40	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0114889_41	UniRef90	UniRef90_UPI001645C731	HK97 gp10 family phage protein	NA
UHGV-0114889_41	eggNOG-mapper	1232428.CAVO010000003_gene1006	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0114889_41	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0114889_41	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0114889_42	PHROG	phrog_525	NA	unknown function
UHGV-0114889_42	Pfam	PF20765	NA	DUF6838
UHGV-0114889_42	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0114889_43	PHROG	phrog_1480	tail sheath	tail
UHGV-0114889_43	UniRef90	UniRef90_UPI0016491346	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-0114889_43	eggNOG-mapper	1232428.CAVO010000003_gene1004	Phage tail sheath C-terminal domain	NA
UHGV-0114889_43	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0114889_43	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0114889_43	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0114889_44	PHROG	phrog_365	tail protein	tail
UHGV-0114889_44	UniRef90	UniRef90_A0A0J6WW96	Phage portal protein	NA
UHGV-0114889_44	eggNOG-mapper	1232428.CAVO010000003_gene1003	Phage tail tube protein	NA
UHGV-0114889_44	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0114889_44	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0114889_45	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0114889_45	UniRef90	UniRef90_A0A3N1XNY1	XkdN-like tail assembly chaperone	NA
UHGV-0114889_45	eggNOG-mapper	1232428.CAVO010000003_gene1002	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0114889_45	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0114889_45	Structural annotation	PF08890	NA	NA
UHGV-0114889_46	PHROG	phrog_2722	NA	unknown function
UHGV-0114889_47	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0114889_47	UniRef90	UniRef90_UPI001645A310	phage tail tape measure protein	NA
UHGV-0114889_47	eggNOG-mapper	1232428.CAVO010000003_gene1001	Phage-related minor tail protein	NA
UHGV-0114889_47	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0114889_47	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0114889_47	COG	COG5283	Phage-related tail protein	NA
UHGV-0114889_47	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0114889_48	PHROG	phrog_5184	NA	unknown function
UHGV-0114889_48	UniRef90	UniRef90_A0A0L0W6M8	LysM domain-containing protein	NA
UHGV-0114889_48	eggNOG-mapper	1232428.CAVO010000003_gene1000	LysM domain	NA
UHGV-0114889_48	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0114889_48	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-0114889_49	PHROG	phrog_400	tail protein	tail
UHGV-0114889_49	UniRef90	UniRef90_A0A848BXY8	Lytic transglycosylase domain-containing protein	NA
UHGV-0114889_49	eggNOG-mapper	1232428.CAVO010000003_gene999	NLP P60 protein	NA
UHGV-0114889_49	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0114889_49	Structural annotation	PF14594, PF00877, NF033848, NF008096, COG3500	NA	NA
UHGV-0114889_50	PHROG	phrog_579	NA	unknown function
UHGV-0114889_50	UniRef90	UniRef90_UPI0016483798	NA	NA
UHGV-0114889_50	eggNOG-mapper	1123250.KB908414_gene2116	NA	NA
UHGV-0114889_50	Pfam	PF10844	NA	DUF2577
UHGV-0114889_50	Structural annotation	PF10844, TIGR00523	NA	NA
UHGV-0114889_51	PHROG	phrog_120	baseplate protein	tail
UHGV-0114889_51	UniRef90	UniRef90_UPI001646EAB8	NA	NA
UHGV-0114889_51	eggNOG-mapper	1232428.CAVO010000003_gene997	NA	NA
UHGV-0114889_51	Pfam	PF10934	NA	DUF2634
UHGV-0114889_51	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0114889_51	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0114889_52	PHROG	phrog_6	baseplate protein	tail
UHGV-0114889_52	UniRef90	UniRef90_UPI0016450683	baseplate J/gp47 family protein	NA
UHGV-0114889_52	eggNOG-mapper	1273103.NM10_00999	Baseplate J-like protein	NA
UHGV-0114889_52	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0114889_52	COG	COG3299	NA	NA
UHGV-0114889_52	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0114889_53	PHROG	phrog_521	tail protein	tail
UHGV-0114889_53	UniRef90	UniRef90_UPI0016446E40	NA	NA
UHGV-0114889_53	eggNOG-mapper	1273103.NM10_00994	NA	NA
UHGV-0114889_53	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0114889_53	COG	COG3778	NA	NA
UHGV-0114889_53	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0114889_54	KOfam	K13925	pfbA; plasmin and fibronectin-binding protein A	NA
UHGV-0114889_54	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0114889_54	UniRef90	UniRef90_UPI000B49B075	phage tail protein	NA
UHGV-0114889_54	eggNOG-mapper	1401067.HMPREF0872_00205	tail collar domain protein	NA
UHGV-0114889_54	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0114889_54	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-0114889_54	COG	COG5301	Phage-related tail fiber protein	NA