UHGV-0114913

Genome information

Genome length 18,107 bps

CDS count 28

Completeness 51.56% (medium-quality)

geNomad score 0.9684

Prediction confidence Confident

Genome information
Genome ID	UHGV-0114913
vOTU ID	vOTU-040977
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_305990
BioSample	SAMEA103958111
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.56% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9684
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.49
Jumbo phage	No

Genome content
Genome length	18,107 bps
GC content	56.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	91.66%
Average CDS length	598.82 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0114913_1	PHROG	phrog_10613	tail length tape measure protein	tail
UHGV-0114913_1	UniRef90	UniRef90_A0A7X6UMX1	Phage tail protein (Fragment)	NA
UHGV-0114913_1	eggNOG-mapper	1408415.JHXL01000001_gene400	phage tail tape measure protein	NA
UHGV-0114913_1	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0114913_2	Structural annotation	PF11836	NA	NA
UHGV-0114913_3	PHROG	phrog_88	major tail protein	tail
UHGV-0114913_3	UniRef90	UniRef90_S0FUN2	Phage major tail protein, phi13 family	NA
UHGV-0114913_3	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0114913_3	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0114913_3	COG	COG5492	NA	NA
UHGV-0114913_3	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0114913_4	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0114913_4	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0114913_4	Structural annotation	TIGR01725	NA	NA
UHGV-0114913_5	eggNOG-mapper	935948.KE386495_gene1329	NA	NA
UHGV-0114913_5	Structural annotation	PF05657	NA	NA
UHGV-0114913_6	PHROG	phrog_19734	NA	unknown function
UHGV-0114913_6	UniRef90	UniRef90_A0A8G1TQJ2	Head-tail adaptor protein	NA
UHGV-0114913_6	eggNOG-mapper	33035.JPJF01000039_gene275	NA	NA
UHGV-0114913_6	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0114913_7	PHROG	phrog_2550	NA	unknown function
UHGV-0114913_7	UniRef90	UniRef90_UPI001E35E63D	phage head-tail connector protein	NA
UHGV-0114913_7	eggNOG-mapper	33035.JPJF01000039_gene274	NA	NA
UHGV-0114913_7	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0114913_8	PHROG	phrog_10	major head protein	head and packaging
UHGV-0114913_8	UniRef90	UniRef90_A0A3D1VAZ0	Phage major capsid protein	NA
UHGV-0114913_8	eggNOG-mapper	642492.Clole_0744	phage major capsid protein, HK97 family	NA
UHGV-0114913_8	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0114913_8	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0114913_8	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0114913_9	eggNOG-mapper	1232453.BAIF02000028_gene2723	capsid protein	NA
UHGV-0114913_9	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0114913_10	KOfam	K06904	NA	NA
UHGV-0114913_10	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0114913_10	UniRef90	UniRef90_A0A3D1VA27	HK97 family phage prohead protease	NA
UHGV-0114913_10	eggNOG-mapper	1235798.C817_04584	Phage prohead protease, HK97 family	NA
UHGV-0114913_10	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0114913_10	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0114913_10	COG	COG3740	Phage head maturation protease	NA
UHGV-0114913_10	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0114913_11	PHROG	phrog_12	portal protein	head and packaging
UHGV-0114913_11	UniRef90	UniRef90_A0A3D1VH02	Phage portal protein	NA
UHGV-0114913_11	eggNOG-mapper	1121423.JONT01000042_gene1421	Phage portal protein, HK97 family	NA
UHGV-0114913_11	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0114913_11	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0114913_11	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0114913_11	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0114913_12	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0114913_12	UniRef90	UniRef90_A0A3D1VAR5	Terminase	NA
UHGV-0114913_12	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0114913_12	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0114913_12	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0114913_12	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0114913_12	Structural annotation	PF03354, PF20441, PF05119, MF_04146, TIGR01547, TIGR01558, COG4626, COG3747	NA	NA
UHGV-0114913_13	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0114913_13	UniRef90	UniRef90_A0A316P1K8	HNH endonuclease	NA
UHGV-0114913_13	eggNOG-mapper	755731.Clo1100_0542	HNH nucleases	NA
UHGV-0114913_13	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0114913_13	Structural annotation	TIGR02646	NA	NA
UHGV-0114913_14	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0114913_14	Structural annotation	PF14205, NF041070	NA	NA
UHGV-0114913_15	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0114913_15	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0114913_15	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0114913_19	eggNOG-mapper	159087.Daro_3465	NA	NA
UHGV-0114913_19	Structural annotation	PF20344, COG3975	NA	NA
UHGV-0114913_20	Structural annotation	PF01402, COG4710	NA	NA
UHGV-0114913_22	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0114913_22	PHROG	phrog_27290	NA	unknown function
UHGV-0114913_22	UniRef90	UniRef90_A0A3D1VH09	ParB domain-containing protein	NA
UHGV-0114913_22	eggNOG-mapper	742738.HMPREF9460_00856	ParB-like nuclease domain	NA
UHGV-0114913_22	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0114913_22	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0114913_23	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0114913_23	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0114913_23	UniRef90	UniRef90_A0A2N2CMQ6	AAA_31 domain-containing protein	NA
UHGV-0114913_23	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0114913_23	Pfam	PF13614	AAA domain	AAA_31
UHGV-0114913_23	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0114913_23	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0114913_24	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0114913_24	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0114913_24	UniRef90	UniRef90_A0A3D1V9Y4	DNA helicase	NA
UHGV-0114913_24	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0114913_24	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0114913_24	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0114913_24	COG	COG0305	Replicative DNA helicase	NA
UHGV-0114913_24	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0114913_25	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0114913_25	UniRef90	UniRef90_UPI001F170B82	helix-turn-helix domain-containing protein	NA
UHGV-0114913_25	eggNOG-mapper	742738.HMPREF9460_00851	Helix-turn-helix domain	NA
UHGV-0114913_25	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0114913_25	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0114913_25	Structural annotation	PF04182, NF040939, COG3355	NA	NA
UHGV-0114913_27	PHROG	phrog_66	excisionase and transcriptional regulator	integration and excision
UHGV-0114913_27	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0114913_27	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0114913_27	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0114913_27	Structural annotation	PF12728, MF_01155, TIGR01764, COG3311	NA	NA
UHGV-0114913_28	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0114913_28	UniRef90	UniRef90_A0A3D4EJF0	XRE family transcriptional regulator	NA
UHGV-0114913_28	eggNOG-mapper	1415774.U728_1274	Helix-turn-helix XRE-family like proteins	NA
UHGV-0114913_28	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA