UHGV-0114940

Genome information

Genome length 24,542 bps

CDS count 43

Completeness 57.78% (medium-quality)

geNomad score 0.9768

Prediction confidence Confident

Genome information
Genome ID	UHGV-0114940
vOTU ID	vOTU-021404
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_296184
BioSample	SAMEA4431868
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.78% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9768
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.71
Jumbo phage	No

Genome content
Genome length	24,542 bps
GC content	41.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	93.02%
Average CDS length	536.65 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0114940_1	eggNOG-mapper	1235790.C805_00014	NA	NA
UHGV-0114940_2	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0114940_5	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0114940_5	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-0114940_5	eggNOG-mapper	552398.HMPREF0866_01626	NA	NA
UHGV-0114940_6	PHROG	phrog_1029	NA	unknown function
UHGV-0114940_6	eggNOG-mapper	411471.SUBVAR_05833	NA	NA
UHGV-0114940_6	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0114940_10	PHROG	phrog_14970	NA	unknown function
UHGV-0114940_10	UniRef90	UniRef90_UPI00164BFA28	Rad52/Rad22 family DNA repair protein	NA
UHGV-0114940_10	eggNOG-mapper	1122981.AUME01000026_gene555	double-strand break repair protein	NA
UHGV-0114940_10	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0114940_10	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0114940_11	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0114940_11	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-0114940_11	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0114940_11	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0114940_12	PHROG	phrog_7566	NA	unknown function
UHGV-0114940_12	UniRef90	UniRef90_A0A7X5CEC2	Phosphoenolpyruvate carboxykinase	NA
UHGV-0114940_12	eggNOG-mapper	508419.F8J187_9CAUD	NA	NA
UHGV-0114940_13	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0114940_13	eggNOG-mapper	33035.JPJF01000122_gene2460	NA	NA
UHGV-0114940_13	Pfam	PF01870	Archaeal holliday junction resolvase (hjc)	Hjc
UHGV-0114940_13	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0114940_14	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0114940_14	eggNOG-mapper	397291.C804_01603	DnaD domain protein	NA
UHGV-0114940_14	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0114940_14	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0114940_15	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0114940_15	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0114940_15	UniRef90	UniRef90_A0A396NX04	IstB_IS21 domain-containing protein	NA
UHGV-0114940_15	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-0114940_15	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0114940_15	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0114940_15	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0114940_16	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0114940_16	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0114940_16	UniRef90	UniRef90_A0A2V2C1N3	Single-stranded DNA-binding protein	NA
UHGV-0114940_16	eggNOG-mapper	97138.C820_02339	Single-stranded DNA-binding protein	NA
UHGV-0114940_16	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0114940_16	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0114940_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0114940_16	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0114940_16	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0114940_19	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0114940_19	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0114940_19	UniRef90	UniRef90_A0A3D1FPL5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0114940_19	eggNOG-mapper	97138.C820_02011	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-0114940_19	PADLOC	MTase_II_00072	Type II methyltransferase	RM
UHGV-0114940_19	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0114940_19	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0114940_19	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0114940_19	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0114940_20	Structural annotation	PF17399	NA	NA
UHGV-0114940_23	PHROG	phrog_10714	NA	unknown function
UHGV-0114940_24	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0114940_24	Structural annotation	NF001994	NA	NA
UHGV-0114940_25	PHROG	phrog_474	phosphofructokinase	other
UHGV-0114940_25	UniRef90	UniRef90_A0A2V2EHL9	NA	NA
UHGV-0114940_25	eggNOG-mapper	1203606.HMPREF1526_00237	NA	NA
UHGV-0114940_25	Pfam	PF19905	NA	DUF6378
UHGV-0114940_25	Structural annotation	PF19905	NA	NA
UHGV-0114940_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0114940_28	UniRef90	UniRef90_A0A174WV03	FliA/WhiG subfamily RNA polymerase sigma-28 subunit	NA
UHGV-0114940_28	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-0114940_28	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0114940_28	Structural annotation	PF07374, MF_00674, NF005248, COG2739	NA	NA
UHGV-0114940_29	Structural annotation	PF01402, NF040976, COG4710	NA	NA
UHGV-0114940_31	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0114940_31	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0114940_31	UniRef90	UniRef90_A0A7X8ICP9	Terminase small subunit	NA
UHGV-0114940_31	eggNOG-mapper	1235792.C808_05330	Terminase small subunit	NA
UHGV-0114940_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0114940_31	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0114940_32	KOfam	K21523	gp17; terminase, large subunit [EC:3.1.-.-]	NA
UHGV-0114940_32	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0114940_32	UniRef90	UniRef90_R5AHR8	Putative terminase large subunit	NA
UHGV-0114940_32	eggNOG-mapper	693746.OBV_23980	phage Terminase large subunit	NA
UHGV-0114940_32	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0114940_32	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0114940_33	PHROG	phrog_156	portal protein	head and packaging
UHGV-0114940_33	eggNOG-mapper	693746.OBV_23930	NA	NA
UHGV-0114940_33	Structural annotation	PF16510, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-0114940_35	PHROG	phrog_35275	NA	unknown function
UHGV-0114940_35	eggNOG-mapper	1226322.HMPREF1545_03846	NA	NA
UHGV-0114940_36	PHROG	phrog_24113	NA	unknown function
UHGV-0114940_36	Structural annotation	PF11133, COG5471	NA	NA
UHGV-0114940_37	PHROG	phrog_371	major head protein	head and packaging
UHGV-0114940_37	UniRef90	UniRef90_UPI001C11985C	Mu-like prophage major head subunit gpT family protein	NA
UHGV-0114940_37	eggNOG-mapper	1226322.HMPREF1545_03848	NA	NA
UHGV-0114940_37	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0114940_37	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0114940_38	PHROG	phrog_13046	NA	unknown function
UHGV-0114940_38	eggNOG-mapper	693746.OBV_23880	NA	NA
UHGV-0114940_38	Structural annotation	PF20387	NA	NA
UHGV-0114940_39	eggNOG-mapper	665956.HMPREF1032_03917	NA	NA
UHGV-0114940_39	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0114940_40	KOfam	K16629	COL21A; collagen type XXI alpha	NA
UHGV-0114940_40	PHROG	phrog_819	tail protein	tail
UHGV-0114940_40	UniRef90	UniRef90_A0A8D9PE13	Virion structural protein	NA
UHGV-0114940_40	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen