UHGV-0114947

Genome information

Genome length 31,822 bps

CDS count 54

Completeness 67.47% (medium-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-0114947
vOTU ID	vOTU-026771
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_299024
BioSample	SAMEA4431899
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.47% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.08
Jumbo phage	No

Genome content
Genome length	31,822 bps
GC content	46.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	94.48%
Average CDS length	560.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0114947_1	eggNOG-mapper	742725.HMPREF9450_02124	NA	NA
UHGV-0114947_2	PHROG	phrog_32115	NA	unknown function
UHGV-0114947_2	UniRef90	UniRef90_A0A413IG66	Phage tail length tape measure family protein	NA
UHGV-0114947_2	eggNOG-mapper	742725.HMPREF9450_02123	nuclear chromosome segregation	NA
UHGV-0114947_2	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0114947_5	PHROG	phrog_1407	major tail protein	tail
UHGV-0114947_5	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0114947_5	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0114947_7	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0114947_9	PHROG	phrog_442	head-tail adaptor	connector
UHGV-0114947_9	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0114947_9	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0114947_11	PHROG	phrog_10	major head protein	head and packaging
UHGV-0114947_11	UniRef90	UniRef90_A0A1V5ID18	Phage capsid family protein	NA
UHGV-0114947_11	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0114947_11	Structural annotation	PF05065, PF15188, MF_04133, TIGR01554, COG4653	NA	NA
UHGV-0114947_12	KOfam	K06904	NA	NA
UHGV-0114947_12	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0114947_12	UniRef90	UniRef90_G5H929	Caudovirus prohead protease	NA
UHGV-0114947_12	eggNOG-mapper	742725.HMPREF9450_02115	Caudovirus prohead serine protease	NA
UHGV-0114947_12	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0114947_12	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0114947_12	COG	COG3740	Phage head maturation protease	NA
UHGV-0114947_12	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0114947_15	UniRef90	UniRef90_A0A8D9PFB4	Peptidase M76 family	NA
UHGV-0114947_15	eggNOG-mapper	742725.HMPREF9450_02112	NA	NA
UHGV-0114947_18	PHROG	phrog_38431	NA	unknown function
UHGV-0114947_18	UniRef90	UniRef90_F3QSP5	Conserved domain protein	NA
UHGV-0114947_18	eggNOG-mapper	762968.HMPREF9441_00551	NA	NA
UHGV-0114947_20	PHROG	phrog_28898	NA	unknown function
UHGV-0114947_20	eggNOG-mapper	742725.HMPREF9450_02107	NA	NA
UHGV-0114947_20	Structural annotation	PF10781	NA	NA
UHGV-0114947_22	PHROG	phrog_16490	NA	unknown function
UHGV-0114947_22	UniRef90	UniRef90_A0A8F1B6F8	Outer capsid protein/viral fiber	NA
UHGV-0114947_22	eggNOG-mapper	742725.HMPREF9450_02105	NA	NA
UHGV-0114947_24	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0114947_24	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0114947_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0114947_25	eggNOG-mapper	742725.HMPREF9450_02103	Portal protein	NA
UHGV-0114947_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0114947_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0114947_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0114947_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0114947_26	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0114947_26	UniRef90	UniRef90_G5H916	PBSX family phage terminase, large subunit	NA
UHGV-0114947_26	eggNOG-mapper	742725.HMPREF9450_02102	Phage terminase, large subunit, PBSX family	NA
UHGV-0114947_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0114947_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0114947_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0114947_27	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0114947_27	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0114947_27	UniRef90	UniRef90_A0A316NYX6	Terminase small subunit	NA
UHGV-0114947_27	eggNOG-mapper	742725.HMPREF9450_02101	COG NOG24226 non supervised orthologous group	NA
UHGV-0114947_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0114947_27	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0114947_27	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0114947_28	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0114947_28	UniRef90	UniRef90_G5H914	HTH cro/C1-type domain-containing protein	NA
UHGV-0114947_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0114947_29	UniRef90	UniRef90_A0A1F3LUH0	Fib_succ_major domain-containing protein	NA
UHGV-0114947_29	Structural annotation	PF09603, TIGR02145	NA	NA
UHGV-0114947_30	eggNOG-mapper	1121100.JCM6294_1073	NA	NA
UHGV-0114947_30	Pfam	PF08299	Bacterial dnaA protein helix-turn-helix	Bac_DnaA_C
UHGV-0114947_30	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0114947_30	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0114947_31	UniRef90	UniRef90_UPI0018F1FAC5	retroviral-like aspartic protease family protein	NA
UHGV-0114947_31	Pfam	PF13650	Aspartyl protease	Asp_protease_2
UHGV-0114947_31	COG	COG3577	Predicted aspartyl protease	NA
UHGV-0114947_32	PHROG	phrog_8684	NA	unknown function
UHGV-0114947_32	UniRef90	UniRef90_A0A847H4K2	YopX domain-containing protein	NA
UHGV-0114947_32	eggNOG-mapper	40522.A8ASP1_BPA50	YopX protein	NA
UHGV-0114947_32	Pfam	PF09643	YopX protein	YopX
UHGV-0114947_32	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0114947_35	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0114947_35	UniRef90	UniRef90_A0A373NRP8	MazG domain-containing protein	NA
UHGV-0114947_35	eggNOG-mapper	1121286.AUMT01000013_gene2680	NA	NA
UHGV-0114947_35	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0114947_36	PHROG	phrog_1273	NA	unknown function
UHGV-0114947_37	PHROG	phrog_20182	NA	unknown function
UHGV-0114947_38	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0114947_39	PHROG	phrog_10841	NA	unknown function
UHGV-0114947_40	eggNOG-mapper	742725.HMPREF9450_02087	NA	NA
UHGV-0114947_42	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0114947_42	UniRef90	UniRef90_UPI001896B453	NA	NA
UHGV-0114947_42	eggNOG-mapper	1243664.CAVL020000020_gene3193	NA	NA
UHGV-0114947_42	Pfam	PF06356	NA	DUF1064
UHGV-0114947_42	Structural annotation	PF06356, NF033179	NA	NA
UHGV-0114947_45	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0114947_45	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0114947_45	UniRef90	UniRef90_A0A316PKQ3	Replicative DNA helicase	NA
UHGV-0114947_45	eggNOG-mapper	1203611.KB894553_gene2367	Participates in initiation and elongation during chromosome replication	NA
UHGV-0114947_45	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0114947_45	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0114947_45	COG	COG0305	Replicative DNA helicase	NA
UHGV-0114947_45	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0114947_46	PHROG	phrog_15768	NA	unknown function
UHGV-0114947_46	UniRef90	UniRef90_UPI001C1E0E19	GntR family transcriptional regulator	NA
UHGV-0114947_46	eggNOG-mapper	411477.PARMER_02072	DnaD domain protein	NA
UHGV-0114947_46	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0114947_46	Structural annotation	PF08222, NF033788, COG0640	NA	NA
UHGV-0114947_48	UniRef90	UniRef90_A0A840CR27	ElaB/YqjD/DUF883 family membrane-anchored ribosome-binding protein	NA
UHGV-0114947_48	eggNOG-mapper	888059.HMPREF9071_2106	NA	NA
UHGV-0114947_48	Structural annotation	PF21662, NF038178	NA	NA
UHGV-0114947_49	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0114947_49	UniRef90	UniRef90_A0A316PEM7	PDDEXK_1 domain-containing protein	NA
UHGV-0114947_49	eggNOG-mapper	313596.RB2501_01430	Belongs to the helicase family. UvrD subfamily	NA
UHGV-0114947_49	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0114947_49	COG	COG2887	RecB family exonuclease	NA
UHGV-0114947_50	eggNOG-mapper	1122605.KB893643_gene671	NA	NA