UHGV-0115002

Genome information

Genome length 42,562 bps

CDS count 56

Completeness 100.00% (complete)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-0115002
vOTU ID	vOTU-045721
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_309600
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.94
Jumbo phage	No

Genome content
Genome length	42,562 bps
GC content	57.81%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	92.35%
Average CDS length	705.54 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0115002_2	PHROG	phrog_22978	NA	unknown function
UHGV-0115002_2	UniRef90	UniRef90_A0A1Y4WLF7	PBECR5 domain-containing protein	NA
UHGV-0115002_2	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-0115002_2	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-0115002_6	PHROG	phrog_16490	NA	unknown function
UHGV-0115002_6	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0115002_7	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0115002_8	UniRef90	UniRef90_A0A8F0WD75	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-0115002_8	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0115002_9	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0115002_9	PHROG	phrog_95	integrase	integration and excision
UHGV-0115002_9	UniRef90	UniRef90_A0A3A9I9T1	Recombinase family protein	NA
UHGV-0115002_9	eggNOG-mapper	357809.Cphy_2997	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0115002_9	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0115002_9	Pfam	PF07508	Recombinase	Recombinase
UHGV-0115002_9	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0115002_9	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0115002_9	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0115002_10	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0115002_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0115002_10	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0115002_10	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0115002_13	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0115002_13	UniRef90	UniRef90_A0A8G0W4U8	Class I SAM-dependent methyltransferase	NA
UHGV-0115002_13	eggNOG-mapper	411461.DORFOR_01143	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0115002_13	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0115002_13	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0115002_13	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0115002_13	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0115002_17	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0115002_17	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0115002_17	UniRef90	UniRef90_UPI001C034617	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0115002_17	eggNOG-mapper	1232452.BAIB02000007_gene1640	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0115002_17	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0115002_17	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0115002_17	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0115002_17	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0115002_18	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0115002_18	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0115002_18	UniRef90	UniRef90_A0A316NA61	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0115002_18	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0115002_18	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0115002_18	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0115002_18	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0115002_20	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0115002_20	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0115002_20	UniRef90	UniRef90_A0A7X8IB41	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0115002_20	eggNOG-mapper	469604.HMPREF0946_00819	NA	NA
UHGV-0115002_20	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0115002_21	eggNOG-mapper	1410650.JHWL01000003_gene2848	NA	NA
UHGV-0115002_21	Structural annotation	PF19808	NA	NA
UHGV-0115002_22	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0115002_22	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0115002_22	UniRef90	UniRef90_A0A810QFR8	Single-stranded DNA-binding protein	NA
UHGV-0115002_22	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-0115002_22	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0115002_22	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0115002_22	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0115002_22	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0115002_22	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0115002_23	Structural annotation	PF12844, MF_00535, NF041951, COG5499	NA	NA
UHGV-0115002_25	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0115002_25	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0115002_25	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0115002_25	Structural annotation	PF05772	NA	NA
UHGV-0115002_26	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-0115002_26	Structural annotation	PF09588, TIGR04328, COG5377	NA	NA
UHGV-0115002_27	UniRef90	UniRef90_A0A845QLQ8	NA	NA
UHGV-0115002_27	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0115002_27	Pfam	PF06378	NA	DUF1071
UHGV-0115002_27	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0115002_30	Structural annotation	PF13384	NA	NA
UHGV-0115002_35	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0115002_35	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0115002_35	UniRef90	UniRef90_A0A810Q5N3	HTH cro/C1-type domain-containing protein	NA
UHGV-0115002_35	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0115002_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0115002_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0115002_35	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0115002_38	UniRef90	UniRef90_A0A4Q3LWZ5	Toxin-antitoxin system HicB family antitoxin	NA
UHGV-0115002_38	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0115002_40	UniRef90	UniRef90_UPI00141260EC	helix-turn-helix domain-containing protein	NA
UHGV-0115002_40	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0115002_41	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0115002_41	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0115002_41	UniRef90	UniRef90_A0A2V2GR60	Terminase-like family protein	NA
UHGV-0115002_41	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0115002_41	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0115002_41	COG	COG1783	Phage terminase large subunit	NA
UHGV-0115002_41	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0115002_42	PHROG	phrog_156	portal protein	head and packaging
UHGV-0115002_42	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0115002_42	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0115002_43	KOfam	K07584	NA	NA
UHGV-0115002_43	PHROG	phrog_4478	peptidase	other
UHGV-0115002_43	UniRef90	UniRef90_UPI0015B63E39	ribosomal-processing cysteine protease Prp	NA
UHGV-0115002_43	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0115002_43	COG	COG2868	NA	NA
UHGV-0115002_43	Structural annotation	PF04327, NF011133, COG2868	NA	NA
UHGV-0115002_44	PHROG	phrog_13908	NA	unknown function
UHGV-0115002_44	UniRef90	UniRef90_UPI0012DFC3C8	ribosomal-processing cysteine protease Prp	NA
UHGV-0115002_44	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0115002_45	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0115002_45	UniRef90	UniRef90_A0A2V2GQW4	N4-gp56 family major capsid protein	NA
UHGV-0115002_45	eggNOG-mapper	748224.HMPREF9436_01399	NA	NA
UHGV-0115002_45	Pfam	PF13252	NA	DUF4043
UHGV-0115002_45	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0115002_45	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0115002_46	PHROG	phrog_15239	NA	unknown function
UHGV-0115002_47	PHROG	phrog_12105	NA	unknown function
UHGV-0115002_47	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-0115002_48	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0115002_48	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0115002_48	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0115002_49	Structural annotation	NF038340	NA	NA
UHGV-0115002_50	PHROG	phrog_372	tail protein	tail
UHGV-0115002_50	UniRef90	UniRef90_A0A3N0HXV0	Pilus assembly protein	NA
UHGV-0115002_50	eggNOG-mapper	658655.HMPREF0988_00525	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0115002_50	Pfam	PF05895	NA	DUF859
UHGV-0115002_50	COG	COG4675	Phage tail collar domain	NA
UHGV-0115002_50	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0115002_51	Structural annotation	PF10651, TIGR04339	NA	NA
UHGV-0115002_52	PHROG	phrog_30034	NA	unknown function
UHGV-0115002_52	UniRef90	UniRef90_A0A3D1XGA4	Chitin-binding type-3 domain-containing protein	NA
UHGV-0115002_52	eggNOG-mapper	1122971.BAME01000151_gene6566	NA	NA
UHGV-0115002_52	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0115002_53	PHROG	phrog_199	holin	lysis
UHGV-0115002_53	UniRef90	UniRef90_UPI001BEFC888	Phage holin family protein	NA
UHGV-0115002_53	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0115002_53	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0115002_53	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0115002_53	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0115002_53	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0115002_54	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0115002_54	PHROG	phrog_35436	amidase	lysis
UHGV-0115002_54	UniRef90	UniRef90_A0A350TLR9	Peptidoglycan-binding domain-containing protein	NA
UHGV-0115002_54	eggNOG-mapper	1504823.CCMM01000008_gene1019	Ami_2	NA
UHGV-0115002_54	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0115002_54	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0115002_54	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0115002_54	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG3023	NA	NA
UHGV-0115002_55	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0115002_56	PHROG	phrog_22978	NA	unknown function
UHGV-0115002_56	eggNOG-mapper	693746.OBV_23800	NA	NA