UHGV-0115009

Genome information

Genome length 35,806 bps

CDS count 50

Completeness 100.00% (complete)

geNomad score 0.9751

Prediction confidence Confident

Genome information
Genome ID	UHGV-0115009
vOTU ID	vOTU-045723
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_309599
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9751
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.14
Jumbo phage	No

Genome content
Genome length	35,806 bps
GC content	58.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	94.61%
Average CDS length	683.10 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0115009_1	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0115009_1	UniRef90	UniRef90_UPI00187EBED8	phage tail tape measure protein	NA
UHGV-0115009_1	eggNOG-mapper	553184.ATORI0001_1171	Phage tail tape measure protein, TP901 family	NA
UHGV-0115009_1	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0115009_1	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0115009_1	COG	COG1340	NA	NA
UHGV-0115009_2	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0115009_4	PHROG	phrog_290	minor tail protein	tail
UHGV-0115009_4	UniRef90	UniRef90_UPI0013EAFFA2	phage tail tube protein	NA
UHGV-0115009_4	Structural annotation	PF18906, TIGR01603, COG3498	NA	NA
UHGV-0115009_6	Structural annotation	PF08873	NA	NA
UHGV-0115009_7	Structural annotation	TIGR02215	NA	NA
UHGV-0115009_9	PHROG	phrog_10	major head protein	head and packaging
UHGV-0115009_9	UniRef90	UniRef90_A0A7C8BQ74	Phage major capsid protein	NA
UHGV-0115009_9	eggNOG-mapper	1504822.CCNO01000015_gene621	Phage capsid family	NA
UHGV-0115009_9	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0115009_9	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0115009_9	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0115009_9	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0115009_10	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0115009_10	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0115009_10	UniRef90	UniRef90_A0A5K1ITB8	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0115009_10	eggNOG-mapper	1504822.CCNO01000015_gene620	serine-type endopeptidase activity	NA
UHGV-0115009_10	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0115009_10	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0115009_10	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0115009_11	PHROG	phrog_12	portal protein	head and packaging
UHGV-0115009_11	UniRef90	UniRef90_A0A5K1ISP8	Phage portal protein	NA
UHGV-0115009_11	eggNOG-mapper	1504822.CCNO01000015_gene619	Portal protein	NA
UHGV-0115009_11	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0115009_11	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0115009_11	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0115009_11	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0115009_12	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0115009_12	UniRef90	UniRef90_UPI001C9466BE	terminase large subunit	NA
UHGV-0115009_12	eggNOG-mapper	1504822.CCNO01000015_gene618	Terminase	NA
UHGV-0115009_12	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0115009_12	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0115009_12	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0115009_13	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0115009_13	UniRef90	UniRef90_A0A7C8BQA0	P27 family phage terminase small subunit	NA
UHGV-0115009_13	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0115009_13	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0115009_14	PHROG	phrog_6975	NA	unknown function
UHGV-0115009_15	KOfam	K21527	mom; adenine modification enzyme [EC:2.3.1.-]	NA
UHGV-0115009_15	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0115009_15	UniRef90	UniRef90_A0A516MP09	Putative adenine modification enzyme	NA
UHGV-0115009_15	eggNOG-mapper	1122981.AUME01000026_gene532	NA	NA
UHGV-0115009_15	Structural annotation	PF16092, MF_02210, NF007025, COG3818	NA	NA
UHGV-0115009_16	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0115009_16	UniRef90	UniRef90_UPI001C03232B	ParB/Srx family N-terminal domain-containing protein	NA
UHGV-0115009_16	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0115009_16	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0115009_16	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0115009_16	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0115009_16	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0115009_17	PHROG	phrog_6072	NA	unknown function
UHGV-0115009_18	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0115009_18	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0115009_18	UniRef90	UniRef90_U2V393	IstB-like ATP-binding protein	NA
UHGV-0115009_18	eggNOG-mapper	1125712.HMPREF1316_1537	IstB-like ATP binding protein	NA
UHGV-0115009_18	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0115009_18	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0115009_18	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0115009_19	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0115009_19	UniRef90	UniRef90_A0A351WNF6	Phg_2220_C domain-containing protein	NA
UHGV-0115009_19	eggNOG-mapper	1295642.H839_08149	Replication initiation and membrane attachment	NA
UHGV-0115009_19	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0115009_19	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0115009_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0115009_22	PHROG	phrog_1689	nucleotide kinase	other
UHGV-0115009_22	UniRef90	UniRef90_UPI000F54479C	NA	NA
UHGV-0115009_22	eggNOG-mapper	1121866.AUGK01000003_gene1417	NA	NA
UHGV-0115009_22	Pfam	PF11753	NA	DUF3310
UHGV-0115009_23	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0115009_26	PHROG	phrog_1672	NA	unknown function
UHGV-0115009_26	eggNOG-mapper	1111454.HMPREF1250_0272	NA	NA
UHGV-0115009_27	KOfam	K14059	int; integrase	NA
UHGV-0115009_27	PHROG	phrog_1	integrase	integration and excision
UHGV-0115009_27	UniRef90	UniRef90_UPI001C8CA7F2	site-specific integrase	NA
UHGV-0115009_27	eggNOG-mapper	553184.ATORI0001_1194	Belongs to the 'phage' integrase family	NA
UHGV-0115009_27	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0115009_27	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0115009_27	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0115009_31	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0115009_33	UniRef90	UniRef90_A0A415JHX9	XRE family transcriptional regulator	NA
UHGV-0115009_33	eggNOG-mapper	1237149.C900_00569	sequence-specific DNA binding	NA
UHGV-0115009_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0115009_33	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0115009_34	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0115009_34	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0115009_34	UniRef90	UniRef90_A0A3F3PBV0	HTH cro/C1-type domain-containing protein	NA
UHGV-0115009_34	eggNOG-mapper	1227488.C477_20269	Transcriptional regulators	NA
UHGV-0115009_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0115009_34	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0115009_34	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0115009_35	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0115009_35	eggNOG-mapper	33035.JPJF01000109_gene437	Host cell surface-exposed lipoprotein	NA
UHGV-0115009_35	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0115009_35	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0115009_36	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0115009_36	PHROG	phrog_95	integrase	integration and excision
UHGV-0115009_36	UniRef90	UniRef90_C4F8C7	Resolvase, N-terminal domain protein	NA
UHGV-0115009_36	eggNOG-mapper	521003.COLINT_02298	Resolvase, N terminal domain	NA
UHGV-0115009_36	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0115009_36	Pfam	PF07508	Recombinase	Recombinase
UHGV-0115009_36	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0115009_36	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0115009_36	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0115009_37	PHROG	phrog_14030	NA	unknown function
UHGV-0115009_37	UniRef90	UniRef90_UPI001D0A0AA0	peptidoglycan-binding protein	NA
UHGV-0115009_37	eggNOG-mapper	1235794.C811_01508	amidase activity	NA
UHGV-0115009_37	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0115009_37	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0115009_37	Structural annotation	PF08239, NF040678, COG4991	NA	NA
UHGV-0115009_38	UniRef90	UniRef90_UPI0015F03CF8	C39 family peptidase	NA
UHGV-0115009_38	eggNOG-mapper	479437.Elen_2647	NA	NA
UHGV-0115009_38	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0115009_38	COG	COG4990	Predicted cysteine peptidase, C39 family	NA
UHGV-0115009_38	Structural annotation	PF03412, NF033920, COG4990	NA	NA
UHGV-0115009_39	eggNOG-mapper	1280671.AUJH01000012_gene3134	NA	NA
UHGV-0115009_39	Structural annotation	PF19870, NF041681, COG3237	NA	NA
UHGV-0115009_41	PHROG	phrog_4105	NA	unknown function
UHGV-0115009_43	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0115009_43	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0115009_43	UniRef90	UniRef90_A0A096LE05	Reverse transcriptase domain-containing protein	NA
UHGV-0115009_43	eggNOG-mapper	742722.HMPREF9463_00262	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0115009_43	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0115009_43	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0115009_43	Structural annotation	PF00078, TIGR04416, COG3344	NA	NA
UHGV-0115009_44	eggNOG-mapper	742722.HMPREF9463_00260	NA	NA
UHGV-0115009_44	Structural annotation	PF05635, TIGR02436	NA	NA
UHGV-0115009_45	UniRef90	UniRef90_A0A1Y4DQY8	NA	NA
UHGV-0115009_45	eggNOG-mapper	521003.COLINT_02357	NA	NA
UHGV-0115009_45	Pfam	PF19789	NA	DUF6273
UHGV-0115009_45	Structural annotation	PF19789	NA	NA
UHGV-0115009_46	PHROG	phrog_3639	minor tail protein	tail
UHGV-0115009_46	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0115009_46	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0115009_47	Structural annotation	PF01455, MF_00075, TIGR00008, COG0361	NA	NA
UHGV-0115009_48	PHROG	phrog_26795	NA	unknown function
UHGV-0115009_48	eggNOG-mapper	1235794.C811_01382	NA	NA
UHGV-0115009_48	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0115009_49	KOfam	K06882	NA	NA
UHGV-0115009_49	UniRef90	UniRef90_A0A413UHA9	Fibronectin type III domain-containing protein	NA
UHGV-0115009_49	eggNOG-mapper	1235794.C811_01381	Fibronectin type 3 domain	NA
UHGV-0115009_49	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0115009_49	Pfam	PF00754	F5/8 type C domain	F5_F8_type_C
UHGV-0115009_49	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0115009_49	Structural annotation	PF00041, PF02010, PF05939, MF_04116, NF010681, COG3401, COG2372, COG5437	NA	NA
UHGV-0115009_50	PHROG	phrog_17321	NA	unknown function
UHGV-0115009_50	UniRef90	UniRef90_A0A7C8FVX4	Phage tail tape measure protein	NA
UHGV-0115009_50	eggNOG-mapper	1504822.CCNO01000015_gene632	NA	NA
UHGV-0115009_50	COG	COG5283	Phage-related tail protein	NA