UHGV-0115095

Genome information

Genome length 18,783 bps

CDS count 28

Completeness 50.05% (medium-quality)

geNomad score 0.9718

Prediction confidence Confident

Genome information
Genome ID	UHGV-0115095
vOTU ID	vOTU-040916
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_297480
BioSample	SAMEA4431938
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.05% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9718
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.71
Jumbo phage	No

Genome content
Genome length	18,783 bps
GC content	34.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	93.22%
Average CDS length	632.79 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0115095_1	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0115095_1	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0115095_1	UniRef90	UniRef90_A0A413S067	XRE family transcriptional regulator	NA
UHGV-0115095_1	eggNOG-mapper	1256908.HMPREF0373_00646	Helix-turn-helix XRE-family like proteins	NA
UHGV-0115095_1	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0115095_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0115095_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0115095_1	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0115095_2	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0115095_2	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0115095_2	UniRef90	UniRef90_UPI00164BB953	phage antirepressor KilAC domain-containing protein	NA
UHGV-0115095_2	eggNOG-mapper	1589749.A0A0B5A502_9CAUD	DNA binding	NA
UHGV-0115095_2	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0115095_2	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0115095_2	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0115095_3	UniRef90	UniRef90_A0A415XFB8	DNA-binding protein	NA
UHGV-0115095_3	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0115095_3	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0115095_7	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0115095_7	PHROG	phrog_1499	NA	unknown function
UHGV-0115095_7	UniRef90	UniRef90_E2NR75	RecF/RecN/SMC N-terminal domain protein	NA
UHGV-0115095_7	eggNOG-mapper	1214217.ALNF01000014_gene1402	AAA domain	NA
UHGV-0115095_7	PADLOC	AAA_15	NA	NA
UHGV-0115095_7	Pfam	PF13476	AAA domain	AAA_23
UHGV-0115095_7	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0115095_7	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0115095_8	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0115095_8	UniRef90	UniRef90_UPI001EDD2096	ATP-binding protein	NA
UHGV-0115095_8	eggNOG-mapper	552396.HMPREF0863_02438	AAA domain	NA
UHGV-0115095_8	Pfam	PF13479	AAA domain	AAA_24
UHGV-0115095_8	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0115095_9	PHROG	phrog_2698	NA	unknown function
UHGV-0115095_9	UniRef90	UniRef90_UPI000789DD85	NA	NA
UHGV-0115095_9	eggNOG-mapper	650150.ERH_0593	NA	NA
UHGV-0115095_9	Pfam	PF05037	NA	DUF669
UHGV-0115095_9	Structural annotation	PF05037	NA	NA
UHGV-0115095_10	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0115095_10	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0115095_10	UniRef90	UniRef90_E2NR78	Helicase C-terminal domain protein	NA
UHGV-0115095_10	eggNOG-mapper	552396.HMPREF0863_02436	helicase superfamily c-terminal domain	NA
UHGV-0115095_10	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0115095_10	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0115095_10	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0115095_10	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0115095_10	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0115095_11	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0115095_11	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0115095_11	UniRef90	UniRef90_E2NR79	Primase C terminal 2 (PriCT-2)	NA
UHGV-0115095_11	eggNOG-mapper	610130.Closa_1370	Primase C terminal 2 (PriCT-2)	NA
UHGV-0115095_11	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0115095_11	Pfam	PF13481	AAA domain	AAA_25
UHGV-0115095_11	COG	COG3598	RecA-family ATPase	NA
UHGV-0115095_11	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0115095_12	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0115095_12	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0115095_12	UniRef90	UniRef90_E2NR80	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0115095_12	eggNOG-mapper	1232449.BAHV02000018_gene1542	Endodeoxyribonuclease RusA	NA
UHGV-0115095_12	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0115095_12	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0115095_12	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0115095_14	Structural annotation	PF10656	NA	NA
UHGV-0115095_15	PHROG	phrog_4856	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0115095_15	UniRef90	UniRef90_E2NR83	MazG domain-containing protein	NA
UHGV-0115095_15	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0115095_15	Structural annotation	MF_01019, NF002747, COG0140	NA	NA
UHGV-0115095_19	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0115095_20	PHROG	phrog_4019	NA	unknown function
UHGV-0115095_20	UniRef90	UniRef90_F9PY75	Conserved domain protein	NA
UHGV-0115095_21	PHROG	phrog_22292	NA	unknown function
UHGV-0115095_21	eggNOG-mapper	1232446.BAIE02000002_gene811	NA	NA
UHGV-0115095_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0115095_24	Pfam	PF07374	NA	DUF1492
UHGV-0115095_24	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0115095_24	Structural annotation	PF08281, MF_00674, NF007227, COG1191	NA	NA
UHGV-0115095_25	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0115095_25	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0115095_25	UniRef90	UniRef90_E2NR91	Terminase small subunit	NA
UHGV-0115095_25	eggNOG-mapper	1504823.CCMM01000008_gene1049	DNA packaging	NA
UHGV-0115095_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0115095_25	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0115095_25	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0115095_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0115095_26	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0115095_26	UniRef90	UniRef90_A0A417IN81	PBSX family phage terminase large subunit	NA
UHGV-0115095_26	eggNOG-mapper	1504823.CCMM01000008_gene1048	DNA packaging	NA
UHGV-0115095_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0115095_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0115095_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0115095_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0115095_26	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0115095_27	PHROG	phrog_64	portal protein	head and packaging
UHGV-0115095_27	UniRef90	UniRef90_A0A417IN69	Phage portal protein	NA
UHGV-0115095_27	eggNOG-mapper	1504823.CCMM01000008_gene1047	Phage portal protein, SPP1 family	NA
UHGV-0115095_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0115095_27	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0115095_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0115095_28	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0115095_28	UniRef90	UniRef90_A0A1C5T9G1	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-0115095_28	eggNOG-mapper	1504823.CCMM01000008_gene1046	cell adhesion	NA
UHGV-0115095_28	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0115095_28	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0115095_28	COG	COG2369	NA	NA
UHGV-0115095_28	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA