UHGV-0115163

Genome information

Genome length 30,790 bps

CDS count 50

Completeness 85.56% (medium-quality)

geNomad score 0.9728

Prediction confidence Confident

Genome information
Genome ID	UHGV-0115163
vOTU ID	vOTU-026256
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_293252
BioSample	SAMEA4431971
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.56% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9728
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	72.71
Jumbo phage	No

Genome content
Genome length	30,790 bps
GC content	33.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	91.91%
Average CDS length	569.40 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0115163_2	PHROG	phrog_4105	NA	unknown function
UHGV-0115163_2	eggNOG-mapper	537013.CLOSTMETH_01753	NA	NA
UHGV-0115163_3	KOfam	K14059	int; integrase	NA
UHGV-0115163_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0115163_3	UniRef90	UniRef90_H3K6Q3	Core-binding (CB) domain-containing protein (Fragment)	NA
UHGV-0115163_3	eggNOG-mapper	1123250.KB908441_gene1622	Phage integrase family	NA
UHGV-0115163_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0115163_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0115163_3	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0115163_5	eggNOG-mapper	1123250.KB908441_gene1623	NA	NA
UHGV-0115163_6	PHROG	phrog_18608	NA	unknown function
UHGV-0115163_6	eggNOG-mapper	1122917.KB899673_gene660	NA	NA
UHGV-0115163_7	Structural annotation	PF12571	NA	NA
UHGV-0115163_8	PHROG	phrog_521	tail protein	tail
UHGV-0115163_8	UniRef90	UniRef90_UPI001D081220	YmfQ family protein	NA
UHGV-0115163_8	eggNOG-mapper	568816.Acin_1327	NA	NA
UHGV-0115163_8	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0115163_8	COG	COG3778	NA	NA
UHGV-0115163_8	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0115163_9	PHROG	phrog_1608	tail protein	tail
UHGV-0115163_9	UniRef90	UniRef90_UPI001D09317C	baseplate J/gp47 family protein	NA
UHGV-0115163_9	eggNOG-mapper	568816.Acin_1959	Baseplate J-like protein	NA
UHGV-0115163_9	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0115163_9	COG	COG3299	NA	NA
UHGV-0115163_10	eggNOG-mapper	568816.Acin_1959	Baseplate J-like protein	NA
UHGV-0115163_10	COG	COG3299	NA	NA
UHGV-0115163_11	PHROG	phrog_120	baseplate protein	tail
UHGV-0115163_11	UniRef90	UniRef90_A0A412CHX1	NA	NA
UHGV-0115163_11	eggNOG-mapper	1232428.CAVO010000003_gene997	NA	NA
UHGV-0115163_11	Pfam	PF10934	NA	DUF2634
UHGV-0115163_11	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0115163_11	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0115163_12	PHROG	phrog_579	NA	unknown function
UHGV-0115163_12	UniRef90	UniRef90_A0A412CHC2	NA	NA
UHGV-0115163_12	eggNOG-mapper	1232428.CAVO010000003_gene998	NA	NA
UHGV-0115163_12	Pfam	PF10844	NA	DUF2577
UHGV-0115163_12	Structural annotation	PF10844, TIGR00523	NA	NA
UHGV-0115163_13	PHROG	phrog_400	tail protein	tail
UHGV-0115163_13	UniRef90	UniRef90_A0A848BXY8	Lytic transglycosylase domain-containing protein	NA
UHGV-0115163_13	eggNOG-mapper	1232428.CAVO010000003_gene999	NLP P60 protein	NA
UHGV-0115163_13	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0115163_13	Structural annotation	PF14594, PF00877, NF033848, NF008096, COG3500	NA	NA
UHGV-0115163_14	PHROG	phrog_5184	NA	unknown function
UHGV-0115163_14	UniRef90	UniRef90_A0A0L0W6M8	LysM domain-containing protein	NA
UHGV-0115163_14	eggNOG-mapper	1232428.CAVO010000003_gene1000	LysM domain	NA
UHGV-0115163_14	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0115163_14	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0115163_14	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-0115163_15	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0115163_15	UniRef90	UniRef90_UPI001CD3E521	phage tail tape measure protein	NA
UHGV-0115163_15	eggNOG-mapper	1232428.CAVO010000003_gene1001	Phage-related minor tail protein	NA
UHGV-0115163_15	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0115163_15	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0115163_15	COG	COG5283	Phage-related tail protein	NA
UHGV-0115163_15	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0115163_16	PHROG	phrog_2722	NA	unknown function
UHGV-0115163_17	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0115163_17	UniRef90	UniRef90_A0A7Y2PM55	XkdN-like protein	NA
UHGV-0115163_17	eggNOG-mapper	568816.Acin_1336	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0115163_17	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0115163_17	Structural annotation	PF08890	NA	NA
UHGV-0115163_18	PHROG	phrog_365	tail protein	tail
UHGV-0115163_18	UniRef90	UniRef90_A0A412CHD4	Phage portal protein	NA
UHGV-0115163_18	eggNOG-mapper	1232428.CAVO010000003_gene1003	Phage tail tube protein	NA
UHGV-0115163_18	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0115163_18	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0115163_19	PHROG	phrog_1480	tail sheath	tail
UHGV-0115163_19	UniRef90	UniRef90_A0A412CH32	Phage tail sheath protein	NA
UHGV-0115163_19	eggNOG-mapper	1232428.CAVO010000003_gene1004	Phage tail sheath C-terminal domain	NA
UHGV-0115163_19	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0115163_19	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0115163_19	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0115163_20	PHROG	phrog_525	NA	unknown function
UHGV-0115163_20	Pfam	PF20765	NA	DUF6838
UHGV-0115163_20	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0115163_21	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0115163_21	UniRef90	UniRef90_UPI0019591A25	HK97 gp10 family phage protein	NA
UHGV-0115163_21	eggNOG-mapper	1232428.CAVO010000003_gene1006	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0115163_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0115163_21	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0115163_22	PHROG	phrog_25	head closure Hc1	connector
UHGV-0115163_22	UniRef90	UniRef90_UPI001C398F5A	Phage head closure protein	NA
UHGV-0115163_22	eggNOG-mapper	1232428.CAVO010000003_gene1007	Phage head-tail joining protein	NA
UHGV-0115163_22	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0115163_22	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0115163_22	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0115163_22	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0115163_23	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0115163_23	UniRef90	UniRef90_A0A412CHC9	Phage gp6-like head-tail connector protein	NA
UHGV-0115163_23	eggNOG-mapper	66692.ABC1335	Phage gp6-like head-tail connector protein	NA
UHGV-0115163_23	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0115163_23	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0115163_23	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0115163_24	KOfam	K07296	ADIPOQ, ACDC; adiponectin	NA
UHGV-0115163_24	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0115163_24	UniRef90	UniRef90_A0A412CHG4	Collagen-like protein	NA
UHGV-0115163_24	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0115163_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-0115163_25	UniRef90	UniRef90_UPI000E53779F	phage major capsid protein	NA
UHGV-0115163_25	eggNOG-mapper	1341151.ASZU01000004_gene260	Phage capsid family	NA
UHGV-0115163_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0115163_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0115163_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0115163_25	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0115163_26	KOfam	K06904	NA	NA
UHGV-0115163_26	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0115163_26	UniRef90	UniRef90_A0A412CHQ0	HK97 family phage prohead protease	NA
UHGV-0115163_26	eggNOG-mapper	1232428.CAVO010000003_gene1010	Caudovirus prohead serine protease	NA
UHGV-0115163_26	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0115163_26	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0115163_26	COG	COG3740	Phage head maturation protease	NA
UHGV-0115163_26	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0115163_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-0115163_27	UniRef90	UniRef90_UPI00142FCB51	phage portal protein	NA
UHGV-0115163_27	eggNOG-mapper	1232428.CAVO010000003_gene1011	Phage portal protein	NA
UHGV-0115163_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0115163_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0115163_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0115163_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0115163_28	UniRef90	UniRef90_A0A412CHE2	Terminase large subunit	NA
UHGV-0115163_28	eggNOG-mapper	1134413.ANNK01000054_gene2231	Terminase	NA
UHGV-0115163_28	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0115163_28	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0115163_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0115163_28	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0115163_29	PHROG	phrog_1066	NA	unknown function
UHGV-0115163_29	eggNOG-mapper	1232428.CAVO010000003_gene1013	NA	NA
UHGV-0115163_29	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0115163_30	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0115163_30	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0115163_30	UniRef90	UniRef90_UPI000E4F8168	HNH endonuclease	NA
UHGV-0115163_30	eggNOG-mapper	927704.SELR_11230	HNH endonuclease	NA
UHGV-0115163_30	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0115163_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0115163_32	Structural annotation	PF11570, NF038178, COG1842	NA	NA
UHGV-0115163_33	UniRef90	UniRef90_A0A8B2QNX6	HNH domain-containing protein	NA
UHGV-0115163_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0115163_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0115163_34	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0115163_36	PHROG	phrog_7940	NA	unknown function
UHGV-0115163_36	UniRef90	UniRef90_UPI001CD32D52	Bro-N domain-containing protein	NA
UHGV-0115163_36	eggNOG-mapper	936573.HMPREF1147_1319	BRO family, N-terminal domain	NA
UHGV-0115163_36	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0115163_36	COG	COG3617	Prophage antirepressor	NA
UHGV-0115163_36	Structural annotation	PF10543	NA	NA
UHGV-0115163_37	UniRef90	UniRef90_UPI001B8B6F02	ribbon-helix-helix protein, CopG family	NA
UHGV-0115163_37	eggNOG-mapper	397287.C807_00114	NA	NA
UHGV-0115163_39	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0115163_39	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0115163_39	UniRef90	UniRef90_UPI000E49F46F	single-stranded DNA-binding protein	NA
UHGV-0115163_39	eggNOG-mapper	1122217.KB899575_gene2011	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0115163_39	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0115163_39	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0115163_39	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0115163_39	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0115163_39	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0115163_44	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0115163_44	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0115163_44	UniRef90	UniRef90_UPI001D079CA7	replicative DNA helicase	NA
UHGV-0115163_44	eggNOG-mapper	1122217.KB899575_gene1971	Participates in initiation and elongation during chromosome replication	NA
UHGV-0115163_44	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0115163_44	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0115163_44	NCBIFam	TIGR00665.1	replicative DNA helicase	NA
UHGV-0115163_44	COG	COG0305	Replicative DNA helicase	NA
UHGV-0115163_44	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0115163_45	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0115163_45	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0115163_45	UniRef90	UniRef90_UPI001D08DC67	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0115163_45	eggNOG-mapper	632245.CLP_1613	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0115163_45	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0115163_45	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0115163_45	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0115163_45	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0115163_45	Structural annotation	PF09681, TIGR01714, COG3935	NA	NA
UHGV-0115163_48	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0115163_48	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0115163_48	UniRef90	UniRef90_Q9A012	Putative antirepressor-phage associated	NA
UHGV-0115163_48	eggNOG-mapper	1321372.AQQB01000018_gene339	BRO family, N-terminal domain	NA
UHGV-0115163_48	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0115163_48	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0115163_48	COG	COG3617	Prophage antirepressor	NA
UHGV-0115163_48	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0115163_49	UniRef90	UniRef90_UPI0018752EC7	helix-turn-helix domain-containing protein	NA
UHGV-0115163_49	eggNOG-mapper	706434.HMPREF9429_00554	Helix-turn-helix XRE-family like proteins	NA
UHGV-0115163_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0115163_49	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0115163_50	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0115163_50	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0115163_50	UniRef90	UniRef90_UPI001D0BF32E	helix-turn-helix domain-containing protein	NA
UHGV-0115163_50	eggNOG-mapper	568816.Acin_1404	carbohydrate binding	NA
UHGV-0115163_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0115163_50	COG	COG2390	DNA-binding transcriptional regulator LsrR, DeoR family	NA