UHGV-0115166

Genome information

vOTU vOTU-019959

Genome length 54,300 bps

CDS count 91

Completeness 89.10% (medium-quality)

geNomad score 0.9773

Prediction confidence Confident

Genome information
Genome ID	UHGV-0115166
vOTU ID	vOTU-019959
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_293244
BioSample	SAMEA4431971
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.10% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9773
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.54
Jumbo phage	No

Genome content
Genome length	54,300 bps
GC content	38.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	91
CDS density	86.73%
Average CDS length	520.71 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0115166_2	PHROG	phrog_21718	NA	unknown function
UHGV-0115166_2	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0115166_2	Structural annotation	NF033819	NA	NA
UHGV-0115166_4	PHROG	phrog_8545	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UHGV-0115166_4	UniRef90	UniRef90_UPI001D05CE4F	OB-fold putative lipoprotein	NA
UHGV-0115166_4	eggNOG-mapper	742740.HMPREF9474_03479	tRNA_anti-like	NA
UHGV-0115166_4	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0115166_5	UniRef90	UniRef90_A0A3R6JFN4	CopG family transcriptional regulator	NA
UHGV-0115166_5	Structural annotation	PF01402, NF041793, COG4453	NA	NA
UHGV-0115166_8	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0115166_8	UniRef90	UniRef90_UPI001BC35FCF	Rha family transcriptional regulator	NA
UHGV-0115166_8	eggNOG-mapper	97139.C824_03355	Phage regulatory protein	NA
UHGV-0115166_8	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0115166_8	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0115166_8	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0115166_14	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0115166_14	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0115166_14	UniRef90	UniRef90_A0A1C5UE43	Stage III sporulation protein E	NA
UHGV-0115166_14	eggNOG-mapper	1007104.SUS17_2040	DNA segregation ATPase FtsK SpoIIIE	NA
UHGV-0115166_14	PADLOC	SspH_00004	SspH	SSP
UHGV-0115166_14	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-0115166_14	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0115166_14	Structural annotation	PF01580, MF_00350, TIGR03925, COG0433	NA	NA
UHGV-0115166_16	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0115166_16	UniRef90	UniRef90_A0A412YU25	XRE family transcriptional regulator	NA
UHGV-0115166_16	eggNOG-mapper	411470.RUMGNA_00075	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0115166_16	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0115166_16	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0115166_18	eggNOG-mapper	397290.C810_01353	NA	NA
UHGV-0115166_19	Structural annotation	PF07073, MF_00436, NF033216	NA	NA
UHGV-0115166_26	Structural annotation	PF05225, COG2886	NA	NA
UHGV-0115166_28	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0115166_28	UniRef90	UniRef90_A0A4Q5C857	Terminase_6C domain-containing protein	NA
UHGV-0115166_28	eggNOG-mapper	397290.C810_01390	chromosome segregation	NA
UHGV-0115166_28	COG	COG5410	NA	NA
UHGV-0115166_28	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0115166_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0115166_29	UniRef90	UniRef90_A0A410QFZ6	NA	NA
UHGV-0115166_29	eggNOG-mapper	742741.HMPREF9475_02386	sigma factor activity	NA
UHGV-0115166_29	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0115166_29	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0115166_30	PHROG	phrog_64	portal protein	head and packaging
UHGV-0115166_30	UniRef90	UniRef90_R6CA99	SPP1 family phage portal protein	NA
UHGV-0115166_30	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0115166_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0115166_30	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0115166_32	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0115166_33	PHROG	phrog_909	major head protein	head and packaging
UHGV-0115166_33	eggNOG-mapper	1298920.KI911353_gene2661	NA	NA
UHGV-0115166_34	PHROG	phrog_29	major head protein	head and packaging
UHGV-0115166_34	UniRef90	UniRef90_UPI001D02C54B	major capsid protein	NA
UHGV-0115166_34	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0115166_34	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0115166_34	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0115166_35	Structural annotation	PF21169	NA	NA
UHGV-0115166_36	UniRef90	UniRef90_A0A3D4KY33	DNA-packaging protein	NA
UHGV-0115166_36	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0115166_37	PHROG	phrog_1863	NA	unknown function
UHGV-0115166_37	eggNOG-mapper	1232452.BAIB02000007_gene1606	NA	NA
UHGV-0115166_38	PHROG	phrog_1129	holin	lysis
UHGV-0115166_38	UniRef90	UniRef90_A0A8D9UII9	Holin	NA
UHGV-0115166_38	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0115166_38	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0115166_38	Structural annotation	PF06946	NA	NA
UHGV-0115166_39	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0115166_40	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0115166_41	Structural annotation	PF05657	NA	NA
UHGV-0115166_42	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-0115166_42	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0115166_43	UniRef90	UniRef90_UPI001D0975F6	NA	NA
UHGV-0115166_43	Structural annotation	PF16478	NA	NA
UHGV-0115166_45	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-0115166_45	UniRef90	UniRef90_A0A415D594	SLT domain-containing protein	NA
UHGV-0115166_45	eggNOG-mapper	397290.C810_01419	Transglycosylase SLT domain	NA
UHGV-0115166_45	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0115166_45	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0115166_45	Structural annotation	NF012014	NA	NA
UHGV-0115166_46	PHROG	phrog_1194	NA	unknown function
UHGV-0115166_46	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-0115166_46	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0115166_47	PHROG	phrog_13879	NA	unknown function
UHGV-0115166_47	eggNOG-mapper	1235800.C819_00474	NA	NA
UHGV-0115166_47	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0115166_48	PHROG	phrog_18725	NA	unknown function
UHGV-0115166_48	eggNOG-mapper	742740.HMPREF9474_03517	NA	NA
UHGV-0115166_49	eggNOG-mapper	1298920.KI911353_gene4837	NA	NA
UHGV-0115166_50	PHROG	phrog_19695	NA	unknown function
UHGV-0115166_50	eggNOG-mapper	478749.BRYFOR_08558	NA	NA
UHGV-0115166_50	Structural annotation	PF19714	NA	NA
UHGV-0115166_51	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-0115166_51	Structural annotation	PF10651	NA	NA
UHGV-0115166_54	PHROG	phrog_17147	NA	unknown function
UHGV-0115166_54	UniRef90	UniRef90_A0A374JQW7	NA	NA
UHGV-0115166_54	eggNOG-mapper	33035.JPJF01000043_gene1001	NA	NA
UHGV-0115166_55	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0115166_55	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0115166_55	UniRef90	UniRef90_UPI00156F87C5	RNA-directed DNA polymerase	NA
UHGV-0115166_55	eggNOG-mapper	33035.JPJF01000043_gene1000	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0115166_55	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0115166_55	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0115166_55	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0115166_55	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0115166_56	eggNOG-mapper	457412.RSAG_04672	NA	NA
UHGV-0115166_57	PHROG	phrog_28526	NA	unknown function
UHGV-0115166_57	UniRef90	UniRef90_UPI00156FE2AD	NA	NA
UHGV-0115166_57	eggNOG-mapper	411462.DORLON_00769	NA	NA
UHGV-0115166_57	Pfam	PF04255	NA	DUF433
UHGV-0115166_58	Structural annotation	PF13384, NF001074, COG3677	NA	NA
UHGV-0115166_59	KOfam	K07273	acm; lysozyme	NA
UHGV-0115166_59	PHROG	phrog_291	endolysin	lysis
UHGV-0115166_59	UniRef90	UniRef90_D4M5A7	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0115166_59	eggNOG-mapper	537007.BLAHAN_04972	Glycosyl hydrolases family 25	NA
UHGV-0115166_59	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0115166_59	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0115166_59	Structural annotation	PF01183, NF003627, COG3757, COG5492	NA	NA
UHGV-0115166_60	UniRef90	UniRef90_A0A3D5TFB0	HTH cro/C1-type domain-containing protein	NA
UHGV-0115166_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0115166_60	COG	COG1395	Predicted transcriptional regulator	NA
UHGV-0115166_60	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0115166_62	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0115166_62	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0115166_62	UniRef90	UniRef90_UPI001C01C52A	helix-turn-helix domain-containing protein	NA
UHGV-0115166_62	eggNOG-mapper	903814.ELI_1263	Helix-turn-helix domain	NA
UHGV-0115166_62	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0115166_62	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0115166_62	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0115166_64	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0115166_64	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0115166_64	UniRef90	UniRef90_A0A396PS14	Phage antirepressor Ant	NA
UHGV-0115166_64	eggNOG-mapper	411470.RUMGNA_02184	Phage antirepressor protein	NA
UHGV-0115166_64	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0115166_64	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0115166_64	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0115166_64	Structural annotation	PF09669, PF03374, TIGR02681, COG3646	NA	NA
UHGV-0115166_65	Structural annotation	PF20037, COG3212	NA	NA
UHGV-0115166_67	PHROG	phrog_4292	NA	unknown function
UHGV-0115166_67	eggNOG-mapper	411460.RUMTOR_01375	NA	NA
UHGV-0115166_70	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-0115166_70	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0115166_70	UniRef90	UniRef90_A0A3D3U8P6	NA	NA
UHGV-0115166_70	eggNOG-mapper	1454004.AW11_02382	NA	NA
UHGV-0115166_70	Pfam	PF12684	NA	DUF3799
UHGV-0115166_70	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0115166_70	Structural annotation	PF12684, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-0115166_71	PHROG	phrog_3657	NA	unknown function
UHGV-0115166_71	eggNOG-mapper	1121864.OMO_02139	NA	NA
UHGV-0115166_72	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0115166_72	UniRef90	UniRef90_R5GFL1	Putative prophage Lp2 protein 24	NA
UHGV-0115166_72	eggNOG-mapper	697281.Mahau_0558	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0115166_72	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0115166_72	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0115166_73	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0115166_73	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0115166_73	UniRef90	UniRef90_A0A173R0S1	Single-stranded DNA-binding protein	NA
UHGV-0115166_73	eggNOG-mapper	471875.RUMLAC_01617	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0115166_73	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0115166_73	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0115166_73	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0115166_73	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0115166_73	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0115166_75	PHROG	phrog_1163	NA	unknown function
UHGV-0115166_75	UniRef90	UniRef90_U4QYU3	DNA replication protein	NA
UHGV-0115166_75	eggNOG-mapper	278197.PEPE_1019	DnaD domain protein	NA
UHGV-0115166_75	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0115166_75	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0115166_75	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0115166_75	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0115166_76	PHROG	phrog_9804	NA	unknown function
UHGV-0115166_76	UniRef90	UniRef90_A0A1C5LKA4	Inhibitor_G39P domain-containing protein	NA
UHGV-0115166_76	eggNOG-mapper	903814.ELI_3550	Loader and inhibitor of phage G40P	NA
UHGV-0115166_76	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0115166_76	Structural annotation	PF11417	NA	NA
UHGV-0115166_77	PHROG	phrog_4433	NA	unknown function
UHGV-0115166_77	eggNOG-mapper	665950.HMPREF1025_01373	regulation of DNA-templated transcription, elongation	NA
UHGV-0115166_77	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0115166_77	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0115166_78	Structural annotation	PF17354	NA	NA
UHGV-0115166_79	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0115166_79	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0115166_79	UniRef90	UniRef90_A0A396Q1C9	Methyltransferase	NA
UHGV-0115166_79	eggNOG-mapper	411468.CLOSCI_00299	DNA methylase	NA
UHGV-0115166_79	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0115166_79	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0115166_79	COG	COG0863	DNA modification methylase	NA
UHGV-0115166_79	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0115166_80	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0115166_80	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0115166_80	UniRef90	UniRef90_A0A396PTY1	Methyltransferase	NA
UHGV-0115166_80	eggNOG-mapper	1214217.ALNF01000014_gene1390	N-4 methylation of cytosine	NA
UHGV-0115166_80	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0115166_80	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0115166_80	COG	COG0863	DNA modification methylase	NA
UHGV-0115166_80	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0115166_83	Structural annotation	PF01917, NF006325	NA	NA
UHGV-0115166_84	Structural annotation	PF17400	NA	NA
UHGV-0115166_86	PHROG	phrog_9822	NA	unknown function
UHGV-0115166_87	eggNOG-mapper	887325.HMPREF0381_0090	NA	NA
UHGV-0115166_88	UniRef90	UniRef90_UPI0006D0B862	NA	NA
UHGV-0115166_88	Pfam	PF04448	NA	DUF551
UHGV-0115166_90	PHROG	phrog_16129	excisionase	integration and excision
UHGV-0115166_90	UniRef90	UniRef90_A0A3R6K9H8	Helix-turn-helix domain-containing protein	NA
UHGV-0115166_90	eggNOG-mapper	658088.HMPREF0987_01415	Excisionase from transposon Tn916	NA
UHGV-0115166_90	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0115166_90	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-0115166_90	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0115166_90	Structural annotation	PF09035, PF00196, MF_00674, NF033787, NF008895, COG2771	NA	NA
UHGV-0115166_91	KOfam	K14059	int; integrase	NA
UHGV-0115166_91	PHROG	phrog_1	integrase	integration and excision
UHGV-0115166_91	UniRef90	UniRef90_A0A412RQS9	Site-specific integrase	NA
UHGV-0115166_91	eggNOG-mapper	742733.HMPREF9469_03088	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0115166_91	Pfam	PF02920	DNA binding domain of tn916 integrase	Integrase_DNA
UHGV-0115166_91	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0115166_91	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0115166_91	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0115166_91	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA