UHGV-0115215

Genome information

Genome length 38,651 bps

CDS count 62

Completeness 94.13% (high-quality)

geNomad score 0.9691

Prediction confidence Confident

Genome information
Genome ID	UHGV-0115215
vOTU ID	vOTU-062995
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_297595
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.13% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	27
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9691
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	77.72
Jumbo phage	No

Genome content
Genome length	38,651 bps
GC content	34.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	93.63%
Average CDS length	588.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0115215_1	eggNOG-mapper	1232446.BAIE02000003_gene848	NA	NA
UHGV-0115215_4	PHROG	phrog_21357	endolysin	lysis
UHGV-0115215_4	UniRef90	UniRef90_A0A3E3EAM4	CHAP domain-containing protein	NA
UHGV-0115215_4	eggNOG-mapper	428126.CLOSPI_02072	lysozyme activity	NA
UHGV-0115215_4	Pfam	PF05257	CHAP domain	CHAP
UHGV-0115215_4	COG	COG1388	LysM repeat	NA
UHGV-0115215_4	Structural annotation	PF10030, TIGR02594, COG4991, COG3942	NA	NA
UHGV-0115215_5	PHROG	phrog_918	NA	unknown function
UHGV-0115215_5	UniRef90	UniRef90_UPI000E468F85	NA	NA
UHGV-0115215_5	eggNOG-mapper	469618.FVAG_01307	NA	NA
UHGV-0115215_5	Pfam	PF19791	NA	DUF6275
UHGV-0115215_5	Structural annotation	PF19791	NA	NA
UHGV-0115215_6	PHROG	phrog_199	holin	lysis
UHGV-0115215_6	UniRef90	UniRef90_UPI000E5454C5	phage holin family protein	NA
UHGV-0115215_6	eggNOG-mapper	445974.CLORAM_02916	Bacteriophage holin family	NA
UHGV-0115215_6	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0115215_6	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0115215_6	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0115215_8	eggNOG-mapper	445974.CLORAM_02918	NA	NA
UHGV-0115215_8	COG	COG4675	Phage tail collar domain	NA
UHGV-0115215_9	PHROG	phrog_19556	tail fiber protein; host specificity	tail
UHGV-0115215_9	eggNOG-mapper	411470.RUMGNA_02230	NA	NA
UHGV-0115215_10	PHROG	phrog_19556	tail fiber protein; host specificity	tail
UHGV-0115215_10	UniRef90	UniRef90_A0A087BZT1	NA	NA
UHGV-0115215_10	eggNOG-mapper	1504823.CCMM01000008_gene1029	NA	NA
UHGV-0115215_10	Structural annotation	PF03921, NF038186	NA	NA
UHGV-0115215_11	PHROG	phrog_6468	tail fiber protein; host specificity	tail
UHGV-0115215_11	UniRef90	UniRef90_UPI001C2BBD47	phage tail protein	NA
UHGV-0115215_11	eggNOG-mapper	556261.HMPREF0240_01281	cellulase activity	NA
UHGV-0115215_11	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0115215_11	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0115215_11	Structural annotation	PF14594, PF19081, TIGR01665, TIGR04488, COG4926	NA	NA
UHGV-0115215_12	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0115215_12	UniRef90	UniRef90_UPI001C2C70C6	phage tail family protein	NA
UHGV-0115215_12	eggNOG-mapper	1235796.C815_00909	Phage tail protein	NA
UHGV-0115215_12	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0115215_12	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0115215_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-0115215_12	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0115215_13	PHROG	phrog_1204	tail protein	tail
UHGV-0115215_13	UniRef90	UniRef90_UPI001D074B2F	tape measure protein	NA
UHGV-0115215_13	eggNOG-mapper	1260356.D920_01748	nuclear chromosome segregation	NA
UHGV-0115215_13	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0115215_13	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0115215_13	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0115215_13	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0115215_14	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0115215_14	eggNOG-mapper	476272.RUMHYD_02862	NA	NA
UHGV-0115215_15	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0115215_15	UniRef90	UniRef90_A0A1C5RIQ9	NA	NA
UHGV-0115215_15	eggNOG-mapper	476272.RUMHYD_02861	Phage tail assembly chaperone protein, TAC	NA
UHGV-0115215_15	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0115215_15	Structural annotation	PF12363	NA	NA
UHGV-0115215_16	PHROG	phrog_238	major tail protein	tail
UHGV-0115215_16	UniRef90	UniRef90_UPI0001A27211	phage major tail protein, TP901-1 family	NA
UHGV-0115215_16	eggNOG-mapper	476272.RUMHYD_02860	Phage tail tube protein	NA
UHGV-0115215_16	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0115215_16	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0115215_16	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0115215_17	PHROG	phrog_176	tail terminator	connector
UHGV-0115215_17	UniRef90	UniRef90_UPI00051ADDDD	NA	NA
UHGV-0115215_17	eggNOG-mapper	476272.RUMHYD_02859	NA	NA
UHGV-0115215_17	Structural annotation	PF11367	NA	NA
UHGV-0115215_18	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0115215_18	UniRef90	UniRef90_UPI0001A2720F	HK97 gp10 family phage protein	NA
UHGV-0115215_18	eggNOG-mapper	1123315.AUIP01000003_gene248	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0115215_18	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0115215_18	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0115215_18	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0115215_19	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0115215_19	eggNOG-mapper	476272.RUMHYD_02857	NA	NA
UHGV-0115215_19	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0115215_20	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0115215_20	UniRef90	UniRef90_UPI001C2BC1AB	phage head-tail connector protein	NA
UHGV-0115215_20	eggNOG-mapper	1235796.C815_00917	Phage gp6-like head-tail connector protein	NA
UHGV-0115215_20	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0115215_20	Structural annotation	PF05135	NA	NA
UHGV-0115215_21	PHROG	phrog_390	Arc-like repressor	transcription regulation
UHGV-0115215_21	UniRef90	UniRef90_UPI0018F16521	Rho termination protein	NA
UHGV-0115215_21	eggNOG-mapper	279808.SH2353	Rho termination factor, N-terminal domain	NA
UHGV-0115215_22	PHROG	phrog_544	major head protein	head and packaging
UHGV-0115215_22	UniRef90	UniRef90_R9C6R9	NA	NA
UHGV-0115215_22	eggNOG-mapper	476272.RUMHYD_02854	NA	NA
UHGV-0115215_22	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0115215_23	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0115215_23	UniRef90	UniRef90_UPI001D064961	NA	NA
UHGV-0115215_23	eggNOG-mapper	1235792.C808_05338	NA	NA
UHGV-0115215_23	Pfam	PF14265	NA	DUF4355
UHGV-0115215_23	Structural annotation	PF14265	NA	NA
UHGV-0115215_24	KOfam	K07584	NA	NA
UHGV-0115215_24	PHROG	phrog_4478	peptidase	other
UHGV-0115215_24	UniRef90	UniRef90_UPI000E544D35	ribosomal-processing cysteine protease Prp	NA
UHGV-0115215_24	eggNOG-mapper	1232453.BAIF02000011_gene3357	Cysteine protease Prp	NA
UHGV-0115215_24	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0115215_24	COG	COG2868	NA	NA
UHGV-0115215_24	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0115215_28	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0115215_28	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0115215_28	UniRef90	UniRef90_UPI001C2B863B	minor capsid protein	NA
UHGV-0115215_28	eggNOG-mapper	476272.RUMHYD_02847	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0115215_28	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0115215_28	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0115215_28	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0115215_28	COG	COG2369	NA	NA
UHGV-0115215_28	Structural annotation	PF03496, PF04233, MF_04142, NF041404, TIGR01641, COG2369	NA	NA
UHGV-0115215_29	PHROG	phrog_64	portal protein	head and packaging
UHGV-0115215_29	UniRef90	UniRef90_UPI001C2BD69A	phage portal protein	NA
UHGV-0115215_29	eggNOG-mapper	1235792.C808_05332	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0115215_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0115215_29	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0115215_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0115215_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0115215_30	PHROG	phrog_10250	NA	unknown function
UHGV-0115215_30	UniRef90	UniRef90_UPI001D08CAED	PBSX family phage terminase large subunit	NA
UHGV-0115215_30	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-0115215_30	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0115215_30	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0115215_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0115215_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0115215_30	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0115215_31	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0115215_31	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0115215_31	UniRef90	UniRef90_UPI001C2C96F3	terminase small subunit	NA
UHGV-0115215_31	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0115215_31	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-0115215_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0115215_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0115215_31	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0115215_34	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0115215_34	UniRef90	UniRef90_UPI00189EE045	Rha family transcriptional regulator	NA
UHGV-0115215_34	eggNOG-mapper	1211844.CBLM010000016_gene1514	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0115215_34	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0115215_34	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0115215_34	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0115215_34	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0115215_34	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0115215_37	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0115215_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0115215_37	UniRef90	UniRef90_A0A265Q973	HTH cro/C1-type domain-containing protein	NA
UHGV-0115215_37	eggNOG-mapper	1507.HMPREF0262_03473	sequence-specific DNA binding	NA
UHGV-0115215_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0115215_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0115215_38	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0115215_38	Structural annotation	PF04545, TIGR01636, COG2739	NA	NA
UHGV-0115215_39	Structural annotation	PF09032	NA	NA
UHGV-0115215_41	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0115215_41	UniRef90	UniRef90_A0A0C2E3P8	Methyltransferase	NA
UHGV-0115215_41	eggNOG-mapper	445974.CLORAM_02945	tRNA (guanine-N2-)-methyltransferase activity	NA
UHGV-0115215_41	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0115215_41	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0115215_41	COG	COG1041	tRNA G10 N-methylase Trm11	NA
UHGV-0115215_41	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0115215_42	PHROG	phrog_959	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0115215_42	UniRef90	UniRef90_A0A3E3ABQ3	HNH endonuclease	NA
UHGV-0115215_42	eggNOG-mapper	999413.HMPREF1094_04725	NA	NA
UHGV-0115215_42	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0115215_42	Structural annotation	PF13392, PF07453	NA	NA
UHGV-0115215_44	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0115215_44	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0115215_44	UniRef90	UniRef90_A0A2T3FZC6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0115215_44	eggNOG-mapper	478749.BRYFOR_07588	endodeoxyribonuclease RusA	NA
UHGV-0115215_44	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0115215_44	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0115215_44	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0115215_45	PHROG	phrog_16687	NA	unknown function
UHGV-0115215_45	eggNOG-mapper	1123511.KB905868_gene197	NA	NA
UHGV-0115215_46	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0115215_46	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0115215_46	UniRef90	UniRef90_G9QX77	PriCT_2 domain-containing protein	NA
UHGV-0115215_46	eggNOG-mapper	999413.HMPREF1094_00232	Primase C terminal 2 (PriCT-2)	NA
UHGV-0115215_46	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0115215_46	Pfam	PF13481	AAA domain	AAA_25
UHGV-0115215_46	COG	COG3598	RecA-family ATPase	NA
UHGV-0115215_46	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0115215_47	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0115215_47	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0115215_47	UniRef90	UniRef90_A0A1Y4QSI3	DEAD/DEAH box helicase	NA
UHGV-0115215_47	eggNOG-mapper	1232449.BAHV02000008_gene620	helicase superfamily c-terminal domain	NA
UHGV-0115215_47	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0115215_47	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0115215_47	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0115215_47	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0115215_47	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0115215_48	PHROG	phrog_2698	NA	unknown function
UHGV-0115215_48	UniRef90	UniRef90_A0A416DTR4	NA	NA
UHGV-0115215_48	eggNOG-mapper	1232449.BAHV02000008_gene619	NA	NA
UHGV-0115215_48	Structural annotation	PF05037	NA	NA
UHGV-0115215_49	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0115215_49	UniRef90	UniRef90_UPI001EDD2096	ATP-binding protein	NA
UHGV-0115215_49	eggNOG-mapper	552396.HMPREF0863_02438	AAA domain	NA
UHGV-0115215_49	Pfam	PF13479	AAA domain	AAA_24
UHGV-0115215_49	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0115215_50	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0115215_50	PHROG	phrog_1499	NA	unknown function
UHGV-0115215_50	UniRef90	UniRef90_G9QX73	AAA_23 domain-containing protein	NA
UHGV-0115215_50	eggNOG-mapper	1232449.BAHV02000010_gene2696	AAA domain	NA
UHGV-0115215_50	Pfam	PF13476	AAA domain	AAA_23
UHGV-0115215_50	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0115215_50	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0115215_56	UniRef90	UniRef90_A0A415XFB8	DNA-binding protein	NA
UHGV-0115215_57	PHROG	phrog_2542	NA	unknown function
UHGV-0115215_59	PHROG	phrog_3202	NA	unknown function
UHGV-0115215_59	UniRef90	UniRef90_UPI001C0EAE91	YjzC family protein	NA
UHGV-0115215_59	eggNOG-mapper	445974.CLORAM_02964	YjzC-like protein	NA
UHGV-0115215_59	Pfam	PF14168	YjzC-like protein	YjzC
UHGV-0115215_59	Structural annotation	PF14168	NA	NA
UHGV-0115215_60	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0115215_60	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0115215_60	UniRef90	UniRef90_A0A7U9CH14	HTH cro/C1-type domain-containing protein	NA
UHGV-0115215_60	eggNOG-mapper	411490.ANACAC_00814	Helix-turn-helix XRE-family like proteins	NA
UHGV-0115215_60	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0115215_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0115215_60	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0115215_60	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0115215_61	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0115215_61	UniRef90	UniRef90_A0A7U9GP11	HTH cro/C1-type domain-containing protein	NA
UHGV-0115215_61	eggNOG-mapper	411469.EUBHAL_01994	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0115215_61	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0115215_61	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0115215_61	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0115215_62	PHROG	phrog_87	metallo-protease	other
UHGV-0115215_62	UniRef90	UniRef90_A0A7U9CEN0	Peptidase_M78 domain-containing protein	NA
UHGV-0115215_62	eggNOG-mapper	469596.HMPREF9488_01306	IrrE N-terminal-like domain	NA
UHGV-0115215_62	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0115215_62	Structural annotation	PF06114, COG2856	NA	NA