UHGV-0115322

Genome information

Genome length 36,550 bps

CDS count 56

Completeness 90.26% (high-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-0115322
vOTU ID	vOTU-060456
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_281784
BioSample	SAMEA3888915
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.26% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.85
Jumbo phage	No

Genome content
Genome length	36,550 bps
GC content	50.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	95.32%
Average CDS length	627.59 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0115322_1	eggNOG-mapper	1200567.JNKD01000011_gene667	NA	NA
UHGV-0115322_1	Structural annotation	PF04232, MF_01122, NF003088	NA	NA
UHGV-0115322_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0115322_2	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0115322_2	UniRef90	UniRef90_A0A7X9GM97	Helix-turn-helix transcriptional regulator (Fragment)	NA
UHGV-0115322_2	eggNOG-mapper	411461.DORFOR_01990	Helix-turn-helix domain	NA
UHGV-0115322_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0115322_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0115322_2	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0115322_9	PHROG	phrog_674	NA	unknown function
UHGV-0115322_9	UniRef90	UniRef90_A0A2S0M9A8	NA	NA
UHGV-0115322_9	eggNOG-mapper	318464.IO99_00465	NA	NA
UHGV-0115322_9	Pfam	PF07083	NA	DUF1351
UHGV-0115322_10	PHROG	phrog_14970	NA	unknown function
UHGV-0115322_10	UniRef90	UniRef90_A0A1C5NV07	DNA damage response protein A	NA
UHGV-0115322_10	eggNOG-mapper	411476.BACOVA_03882	double-strand break repair protein	NA
UHGV-0115322_10	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0115322_10	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0115322_10	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0115322_11	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0115322_11	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0115322_11	Structural annotation	PF05772	NA	NA
UHGV-0115322_12	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0115322_12	PHROG	phrog_22514	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0115322_12	UniRef90	UniRef90_UPI0018C6C2FD	HNH endonuclease	NA
UHGV-0115322_12	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0115322_12	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0115322_12	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0115322_13	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0115322_13	UniRef90	UniRef90_A0A848EUN1	DnaD domain protein	NA
UHGV-0115322_13	eggNOG-mapper	1235793.C809_02194	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0115322_13	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0115322_13	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0115322_13	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0115322_13	Structural annotation	PF09681, TIGR01714, COG3355	NA	NA
UHGV-0115322_14	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0115322_14	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0115322_14	UniRef90	UniRef90_S4U0J1	DNA replication protein DnaC-like protein	NA
UHGV-0115322_14	eggNOG-mapper	1401067.HMPREF0872_03455	DNA-dependent DNA replication	NA
UHGV-0115322_14	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0115322_14	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0115322_14	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0115322_16	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0115322_16	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0115322_16	UniRef90	UniRef90_R7CMF9	Single-stranded DNA-binding protein	NA
UHGV-0115322_16	eggNOG-mapper	592028.GCWU000321_00485	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0115322_16	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0115322_16	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0115322_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0115322_16	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0115322_16	Structural annotation	PF00436, MF_00984, TIGR00621, COG0629	NA	NA
UHGV-0115322_20	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0115322_20	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0115322_20	UniRef90	UniRef90_R6AUC5	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0115322_20	eggNOG-mapper	857293.CAAU_0790	Endodeoxyribonuclease RusA	NA
UHGV-0115322_20	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0115322_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0115322_20	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0115322_23	Structural annotation	PF08281, TIGR01636, COG2739	NA	NA
UHGV-0115322_24	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0115322_24	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0115322_24	UniRef90	UniRef90_D6KP87	Prophage LambdaWp4, DNA methylase	NA
UHGV-0115322_24	eggNOG-mapper	1416334.X2CXX2_9CAUD	N-methyltransferase activity	NA
UHGV-0115322_24	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0115322_24	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0115322_24	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0115322_25	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-0115322_25	UniRef90	UniRef90_A0A516LJ12	Putative beta-glucosyl-HMC-alpha-glucosyl-transferase	NA
UHGV-0115322_25	eggNOG-mapper	508419.F8J156_9CAUD	NA	NA
UHGV-0115322_25	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-0115322_25	Structural annotation	PF20691, NF041865, COG1216	NA	NA
UHGV-0115322_26	KOfam	K22226	ahbC; Fe-coproporphyrin III synthase	NA
UHGV-0115322_26	PHROG	phrog_21308	radical SAM domain-containing protein	other
UHGV-0115322_26	UniRef90	UniRef90_H3K6T6	Radical SAM core domain-containing protein	NA
UHGV-0115322_26	eggNOG-mapper	411459.RUMOBE_01047	Radical SAM superfamily	NA
UHGV-0115322_26	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0115322_26	COG	COG0535	Radical SAM superfamily maturase, SkfB/NifB/PqqE family	NA
UHGV-0115322_26	Structural annotation	PF00834, MF_00660, NF012164, COG0535	NA	NA
UHGV-0115322_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0115322_28	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0115322_28	UniRef90	UniRef90_A0A380NJL4	Phage terminase, large subunit, PBSX family	NA
UHGV-0115322_28	eggNOG-mapper	742733.HMPREF9469_01827	Terminase RNAseH like domain	NA
UHGV-0115322_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0115322_28	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0115322_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0115322_28	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0115322_29	PHROG	phrog_145	portal protein	head and packaging
UHGV-0115322_29	UniRef90	UniRef90_F9MMJ7	Conserved domain protein	NA
UHGV-0115322_29	eggNOG-mapper	706434.HMPREF9429_00529	NA	NA
UHGV-0115322_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0115322_30	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0115322_30	UniRef90	UniRef90_R5BIR3	Ntox50 domain-containing protein	NA
UHGV-0115322_30	eggNOG-mapper	1123489.AUAN01000010_gene362	NA	NA
UHGV-0115322_30	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0115322_33	eggNOG-mapper	706434.HMPREF9429_00526	NA	NA
UHGV-0115322_33	Structural annotation	PF06810	NA	NA
UHGV-0115322_34	PHROG	phrog_212	major head protein	head and packaging
UHGV-0115322_34	UniRef90	UniRef90_A0A3B9DUZ1	Phage capsid protein	NA
UHGV-0115322_34	eggNOG-mapper	1294142.CINTURNW_1029	NA	NA
UHGV-0115322_34	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0115322_35	UniRef90	UniRef90_UPI0005090E80	HK97 gp10 family phage protein	NA
UHGV-0115322_35	eggNOG-mapper	1121090.KB894686_gene3020	Phage virion morphogenesis	NA
UHGV-0115322_35	COG	COG5005	NA	NA
UHGV-0115322_35	Structural annotation	TIGR01725	NA	NA
UHGV-0115322_36	eggNOG-mapper	1000569.HMPREF1040_0193	NA	NA
UHGV-0115322_37	Structural annotation	PF08873, COG5003	NA	NA
UHGV-0115322_38	PHROG	phrog_1407	major tail protein	tail
UHGV-0115322_38	UniRef90	UniRef90_A0A3B9DV80	Phage major tail protein, TP901-1 family	NA
UHGV-0115322_38	eggNOG-mapper	568816.Acin_1231	Phage tail tube protein	NA
UHGV-0115322_38	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0115322_38	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0115322_38	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0115322_38	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0115322_39	Structural annotation	PF11836	NA	NA
UHGV-0115322_40	eggNOG-mapper	568816.Acin_1229	NA	NA
UHGV-0115322_41	PHROG	phrog_12798	NA	unknown function
UHGV-0115322_41	UniRef90	UniRef90_A0A3B9DV14	TMP_3 domain-containing protein	NA
UHGV-0115322_41	eggNOG-mapper	1000569.HMPREF1040_0188	tape measure	NA
UHGV-0115322_41	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0115322_41	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0115322_41	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0115322_41	Structural annotation	PF20155, TIGR01760, NF033930, COG3941	NA	NA
UHGV-0115322_42	PHROG	phrog_2913	glycoside hydrolase	other
UHGV-0115322_42	UniRef90	UniRef90_UPI000C7C1E73	NA	NA
UHGV-0115322_42	eggNOG-mapper	592028.GCWU000321_01387	NA	NA
UHGV-0115322_42	Pfam	PF09343	NA	DUF2460
UHGV-0115322_42	COG	COG5448	NA	NA
UHGV-0115322_42	Structural annotation	PF09343, TIGR02217, COG5448	NA	NA
UHGV-0115322_43	PHROG	phrog_778	tail assembly protein	tail
UHGV-0115322_43	UniRef90	UniRef90_A0A3B9DWJ4	NA	NA
UHGV-0115322_43	eggNOG-mapper	742743.HMPREF9453_00554	NA	NA
UHGV-0115322_43	Pfam	PF09931	NA	DUF2163
UHGV-0115322_43	COG	COG5449	NA	NA
UHGV-0115322_43	Structural annotation	PF09931, TIGR01600, COG4672	NA	NA
UHGV-0115322_44	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0115322_44	PHROG	phrog_329	minor tail protein	tail
UHGV-0115322_44	UniRef90	UniRef90_A0A3B9DUZ7	Hydrolase	NA
UHGV-0115322_44	eggNOG-mapper	742743.HMPREF9453_00553	cysteine-type peptidase activity	NA
UHGV-0115322_44	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0115322_44	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0115322_44	Structural annotation	PF00877, TIGR02219, COG0791	NA	NA
UHGV-0115322_45	PHROG	phrog_1101	tail protein	tail
UHGV-0115322_45	UniRef90	UniRef90_A0A3B9DV75	Phage-tail_3 domain-containing protein	NA
UHGV-0115322_45	eggNOG-mapper	742743.HMPREF9453_00552	Putative phage tail protein	NA
UHGV-0115322_45	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0115322_45	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0115322_45	Structural annotation	PF13550, NF040662, COG4733	NA	NA
UHGV-0115322_46	eggNOG-mapper	742743.HMPREF9453_00547	tail collar domain protein	NA
UHGV-0115322_46	COG	COG4675	Phage tail collar domain	NA
UHGV-0115322_47	KOfam	K14059	int; integrase	NA
UHGV-0115322_47	PHROG	phrog_1	integrase	integration and excision
UHGV-0115322_47	UniRef90	UniRef90_A0A3B9DV66	Recombinase XerC	NA
UHGV-0115322_47	eggNOG-mapper	1273103.NM10_01678	Phage integrase family	NA
UHGV-0115322_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0115322_47	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0115322_47	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0115322_48	PHROG	phrog_32639	NA	unknown function
UHGV-0115322_48	Structural annotation	PF21611	NA	NA
UHGV-0115322_50	eggNOG-mapper	742743.HMPREF9453_00547	tail collar domain protein	NA
UHGV-0115322_50	COG	COG4675	Phage tail collar domain	NA
UHGV-0115322_51	Structural annotation	PF16116	NA	NA
UHGV-0115322_52	PHROG	phrog_1141	tail fiber protein	tail
UHGV-0115322_52	UniRef90	UniRef90_A0A3C1IQ26	NA	NA
UHGV-0115322_52	Pfam	PF14301	NA	DUF4376
UHGV-0115322_52	Structural annotation	PF14301	NA	NA
UHGV-0115322_53	eggNOG-mapper	742743.HMPREF9453_00545	NA	NA
UHGV-0115322_55	PHROG	phrog_5867	endolysin	lysis
UHGV-0115322_55	UniRef90	UniRef90_A0A3B9DVP3	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0115322_55	eggNOG-mapper	592028.GCWU000321_01397	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0115322_55	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0115322_55	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0115322_55	Structural annotation	MF_04111	NA	NA