UHGV-0115339

Genome information

Genome length 38,632 bps

CDS count 50

Completeness 95.43% (high-quality)

geNomad score 0.9746

Prediction confidence Confident

Genome information
Genome ID	UHGV-0115339
vOTU ID	vOTU-060164
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_291182
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.43% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9746
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.9
Jumbo phage	No

Genome content
Genome length	38,632 bps
GC content	39.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	93.54%
Average CDS length	726.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0115339_1	UniRef90	UniRef90_A0A5D8YP02	Heavy metal-binding domain-containing protein	NA
UHGV-0115339_1	Structural annotation	PF11524, MF_00976, TIGR03884, COG0393	NA	NA
UHGV-0115339_2	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0115339_2	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0115339_2	UniRef90	UniRef90_E5CG67	Peptidase_S24 domain-containing protein	NA
UHGV-0115339_2	eggNOG-mapper	1347393.HG726026_gene2595	Peptidase S24-like	NA
UHGV-0115339_2	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0115339_2	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0115339_2	Structural annotation	PF00717, PF13560, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0115339_4	PHROG	phrog_18744	NA	unknown function
UHGV-0115339_4	eggNOG-mapper	1121101.HMPREF1532_02568	NA	NA
UHGV-0115339_5	eggNOG-mapper	272559.BF9343_2321	NA	NA
UHGV-0115339_7	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0115339_7	UniRef90	UniRef90_A0A3E5G704	Recombinase	NA
UHGV-0115339_7	eggNOG-mapper	1268240.ATFI01000007_gene442	Bacteriophage Lambda NinG protein	NA
UHGV-0115339_7	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0115339_7	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0115339_7	Structural annotation	PF05766	NA	NA
UHGV-0115339_8	PHROG	phrog_10608	NA	unknown function
UHGV-0115339_8	eggNOG-mapper	272559.BF9343_2324	NA	NA
UHGV-0115339_10	PHROG	phrog_19415	NA	unknown function
UHGV-0115339_10	UniRef90	UniRef90_E5CG75	NA	NA
UHGV-0115339_10	eggNOG-mapper	1123058.KB894219_gene165	COG NOG19076 non supervised orthologous group	NA
UHGV-0115339_10	Pfam	PF19808	NA	DUF6291
UHGV-0115339_10	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0115339_10	Structural annotation	PF19808	NA	NA
UHGV-0115339_11	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0115339_11	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0115339_11	UniRef90	UniRef90_E5CG76	DNA helicase	NA
UHGV-0115339_11	eggNOG-mapper	742766.HMPREF9455_01845	Participates in initiation and elongation during chromosome replication	NA
UHGV-0115339_11	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0115339_11	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0115339_11	COG	COG0305	Replicative DNA helicase	NA
UHGV-0115339_11	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0115339_12	PHROG	phrog_4932	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0115339_12	UniRef90	UniRef90_A0A412C6J5	NA	NA
UHGV-0115339_12	eggNOG-mapper	411477.PARMER_03311	NA	NA
UHGV-0115339_12	Pfam	PF11325	NA	DUF3127
UHGV-0115339_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0115339_12	Structural annotation	PF11325, MF_00720, NF004476, COG2965	NA	NA
UHGV-0115339_13	eggNOG-mapper	1347393.HG726022_gene3594	NA	NA
UHGV-0115339_14	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0115339_14	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0115339_14	UniRef90	UniRef90_A0A373G2C2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0115339_14	eggNOG-mapper	1229276.DI53_1624	C-5 cytosine-specific DNA methylase	NA
UHGV-0115339_14	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0115339_14	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0115339_14	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0115339_14	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0115339_14	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0115339_17	eggNOG-mapper	470145.BACCOP_01625	NA	NA
UHGV-0115339_19	UniRef90	UniRef90_UPI00037CCD23	helix-turn-helix domain-containing protein	NA
UHGV-0115339_19	eggNOG-mapper	1035193.HMPREF9073_01328	NA	NA
UHGV-0115339_19	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0115339_24	UniRef90	UniRef90_A0A496C6J9	Ribbon-helix-helix domain-containing protein	NA
UHGV-0115339_24	Structural annotation	PF01402, NF041793, COG3905	NA	NA
UHGV-0115339_26	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0115339_26	UniRef90	UniRef90_A0A1G6G5C3	5-methylcytosine-specific restriction enzyme A	NA
UHGV-0115339_26	eggNOG-mapper	1268240.ATFI01000007_gene425	HNH endonuclease	NA
UHGV-0115339_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0115339_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0115339_27	eggNOG-mapper	1268240.ATFI01000007_gene424	NA	NA
UHGV-0115339_28	UniRef90	UniRef90_A0A1G6G5C7	Fructokinase	NA
UHGV-0115339_28	eggNOG-mapper	1268240.ATFI01000007_gene423	Bacterial periplasmic substrate-binding proteins	NA
UHGV-0115339_28	COG	COG0834	ABC-type amino acid transport/signal transduction system, periplasmic component/domain	NA
UHGV-0115339_29	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0115339_29	UniRef90	UniRef90_E5CG97	p27 family putative phage terminase, small subunit	NA
UHGV-0115339_29	eggNOG-mapper	1268240.ATFI01000007_gene422	Phage terminase, small subunit	NA
UHGV-0115339_29	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0115339_29	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0115339_29	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0115339_29	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0115339_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0115339_30	UniRef90	UniRef90_A0A3E5G6E2	Terminase large subunit	NA
UHGV-0115339_30	eggNOG-mapper	1268240.ATFI01000007_gene421	Phage Terminase	NA
UHGV-0115339_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0115339_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0115339_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0115339_30	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0115339_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-0115339_31	UniRef90	UniRef90_A0A1G6G5W6	Phage portal protein, HK97 family	NA
UHGV-0115339_31	eggNOG-mapper	1268240.ATFI01000007_gene420	Phage portal protein	NA
UHGV-0115339_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0115339_31	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0115339_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0115339_31	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0115339_32	KOfam	K06904	NA	NA
UHGV-0115339_32	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0115339_32	UniRef90	UniRef90_E5CGA0	HK97 family phage prohead protease	NA
UHGV-0115339_32	eggNOG-mapper	1268240.ATFI01000007_gene419	Caudovirus prohead serine protease	NA
UHGV-0115339_32	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0115339_32	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0115339_32	COG	COG3740	Phage head maturation protease	NA
UHGV-0115339_32	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0115339_33	PHROG	phrog_617	major head protein	head and packaging
UHGV-0115339_33	UniRef90	UniRef90_UPI000C053F42	phage major capsid protein	NA
UHGV-0115339_33	eggNOG-mapper	1268240.ATFI01000007_gene418	Phage capsid family	NA
UHGV-0115339_33	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0115339_33	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0115339_33	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0115339_33	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0115339_34	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0115339_34	UniRef90	UniRef90_UPI001CCFABBE	head-tail connector protein	NA
UHGV-0115339_34	eggNOG-mapper	1268240.ATFI01000007_gene417	Phage gp6-like head-tail connector protein	NA
UHGV-0115339_34	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0115339_34	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0115339_34	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0115339_35	PHROG	phrog_25	head closure Hc1	connector
UHGV-0115339_35	UniRef90	UniRef90_A0A1G6G5N4	Phage head-tail joining protein	NA
UHGV-0115339_35	eggNOG-mapper	1347393.HG726026_gene2616	Phage head-tail joining protein	NA
UHGV-0115339_35	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0115339_35	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0115339_36	UniRef90	UniRef90_E2N7Z2	Putative phage protein, HK97 gp10 family	NA
UHGV-0115339_36	eggNOG-mapper	1268240.ATFI01000007_gene415	NA	NA
UHGV-0115339_36	Structural annotation	TIGR01725	NA	NA
UHGV-0115339_37	UniRef90	UniRef90_UPI001CCBF085	NA	NA
UHGV-0115339_37	eggNOG-mapper	1347393.HG726026_gene2618	NA	NA
UHGV-0115339_37	Structural annotation	PF11367, COG5003	NA	NA
UHGV-0115339_38	PHROG	phrog_1407	major tail protein	tail
UHGV-0115339_38	UniRef90	UniRef90_A0A449I4M1	Phage major tail protein 2	NA
UHGV-0115339_38	eggNOG-mapper	1347393.HG726026_gene2619	Phage tail tube protein	NA
UHGV-0115339_38	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0115339_38	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0115339_39	eggNOG-mapper	1268240.ATFI01000007_gene412	NA	NA
UHGV-0115339_40	PHROG	phrog_2335	tail length tape measure protein	tail
UHGV-0115339_40	UniRef90	UniRef90_UPI000E4B9DA3	tape measure protein	NA
UHGV-0115339_40	eggNOG-mapper	1268240.ATFI01000007_gene411	tape measure	NA
UHGV-0115339_40	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0115339_40	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0115339_40	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0115339_40	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0115339_41	eggNOG-mapper	1268240.ATFI01000007_gene410	NA	NA
UHGV-0115339_41	Structural annotation	PF14594, TIGR03361, COG4379	NA	NA
UHGV-0115339_42	eggNOG-mapper	1268240.ATFI01000007_gene409	Phage minor structural protein	NA
UHGV-0115339_42	COG	COG4926	Phage-related protein	NA
UHGV-0115339_42	Structural annotation	PF09136	NA	NA
UHGV-0115339_43	PHROG	phrog_24896	NA	unknown function
UHGV-0115339_43	UniRef90	UniRef90_UPI001F39C6C3	leucine-rich repeat domain-containing protein	NA
UHGV-0115339_43	eggNOG-mapper	1121098.HMPREF1534_00276	domain, Protein	NA
UHGV-0115339_43	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0115339_43	COG	COG5492	NA	NA
UHGV-0115339_44	PHROG	phrog_22546	NA	unknown function
UHGV-0115339_44	UniRef90	UniRef90_UPI001F2B15AA	collagen-like protein	NA
UHGV-0115339_44	eggNOG-mapper	411901.BACCAC_00720	chlorophyll binding	NA
UHGV-0115339_44	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0115339_45	PHROG	phrog_32423	NA	unknown function
UHGV-0115339_45	eggNOG-mapper	357276.EL88_08310	NA	NA
UHGV-0115339_46	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0115339_46	PHROG	phrog_822	amidase	lysis
UHGV-0115339_46	UniRef90	UniRef90_D6D6V8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0115339_46	eggNOG-mapper	657309.BXY_05110	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0115339_46	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0115339_46	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0115339_46	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-0115339_47	PHROG	phrog_35356	NA	unknown function
UHGV-0115339_47	UniRef90	UniRef90_A0A3A5SUH3	Histidine kinase	NA
UHGV-0115339_47	eggNOG-mapper	411476.BACOVA_03952	NA	NA
UHGV-0115339_49	UniRef90	UniRef90_F3PTM3	Conserved domain protein	NA
UHGV-0115339_50	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0115339_50	PHROG	phrog_1	integrase	integration and excision
UHGV-0115339_50	UniRef90	UniRef90_E5CGB9	Phage_int_SAM_5 domain-containing protein	NA
UHGV-0115339_50	eggNOG-mapper	1236514.BAKL01000034_gene2907	Belongs to the 'phage' integrase family	NA
UHGV-0115339_50	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0115339_50	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0115339_50	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0115339_50	Structural annotation	PF17293, PF13102, PF00589, MF_01808, NF007246, COG4974	NA	NA