UHGV-0115390

Genome information

Genome length 22,065 bps

CDS count 34

Completeness 52.62% (medium-quality)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-0115390
vOTU ID	vOTU-038897
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_272455
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.62% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.67
Jumbo phage	No

Genome content
Genome length	22,065 bps
GC content	53.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	93.85%
Average CDS length	611.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0115390_1	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0115390_1	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0115390_1	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0115390_1	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0115390_1	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0115390_1	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0115390_1	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0115390_1	COG	COG1783	Phage terminase large subunit	NA
UHGV-0115390_1	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0115390_2	PHROG	phrog_533	portal protein	head and packaging
UHGV-0115390_2	UniRef90	UniRef90_A0A2U1BEK0	A118 family predicted phage portal protein	NA
UHGV-0115390_2	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0115390_2	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0115390_2	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0115390_3	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0115390_3	UniRef90	UniRef90_A0A2U1BEM4	Minor capsid protein 2	NA
UHGV-0115390_3	eggNOG-mapper	903814.ELI_3213	Phage minor capsid protein 2	NA
UHGV-0115390_3	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0115390_3	COG	COG2369	NA	NA
UHGV-0115390_3	Structural annotation	PF06152	NA	NA
UHGV-0115390_4	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0115390_4	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0115390_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0115390_5	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-0115390_5	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0115390_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0115390_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0115390_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0115390_5	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0115390_6	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0115390_6	eggNOG-mapper	1235799.C818_04224	NA	NA
UHGV-0115390_7	PHROG	phrog_3366	NA	unknown function
UHGV-0115390_7	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0115390_7	Pfam	PF20536	NA	DUF6751
UHGV-0115390_7	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0115390_8	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0115390_8	UniRef90	UniRef90_UPI00164EC49A	minor capsid protein	NA
UHGV-0115390_8	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0115390_8	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0115390_8	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0115390_9	PHROG	phrog_3266	tail completion	connector
UHGV-0115390_9	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0115390_9	Structural annotation	PF12691	NA	NA
UHGV-0115390_10	PHROG	phrog_3099	NA	unknown function
UHGV-0115390_10	eggNOG-mapper	1235797.C816_04186	NA	NA
UHGV-0115390_10	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0115390_11	PHROG	phrog_11299	NA	unknown function
UHGV-0115390_11	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0115390_11	Structural annotation	PF10666	NA	NA
UHGV-0115390_12	PHROG	phrog_706	NA	unknown function
UHGV-0115390_12	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0115390_12	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0115390_12	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0115390_12	Structural annotation	PF06854	NA	NA
UHGV-0115390_13	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0115390_13	eggNOG-mapper	1415775.U729_2614	phage tail tape measure protein	NA
UHGV-0115390_13	COG	COG1511	NA	NA
UHGV-0115390_14	PHROG	phrog_1194	NA	unknown function
UHGV-0115390_14	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0115390_15	PHROG	phrog_6616	tail protein	tail
UHGV-0115390_15	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-0115390_15	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0115390_15	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0115390_16	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0115390_16	Structural annotation	NF041249, COG4379	NA	NA
UHGV-0115390_17	UniRef90	UniRef90_A0A8D9PDX6	Zinc-finger double domain protein	NA
UHGV-0115390_17	Structural annotation	PF07238	NA	NA
UHGV-0115390_21	KOfam	K07273	acm; lysozyme	NA
UHGV-0115390_21	PHROG	phrog_291	endolysin	lysis
UHGV-0115390_21	UniRef90	UniRef90_A0A3D2G0D9	Cpl-7 domain-containing protein	NA
UHGV-0115390_21	eggNOG-mapper	1123263.AUKY01000046_gene483	Glycosyl hydrolases family 25	NA
UHGV-0115390_21	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0115390_21	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0115390_21	COG	COG1388	LysM repeat	NA
UHGV-0115390_21	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0115390_22	PHROG	phrog_37604	NA	unknown function
UHGV-0115390_22	eggNOG-mapper	585501.HMPREF6123_0817	NA	NA
UHGV-0115390_23	PHROG	phrog_608	holin	lysis
UHGV-0115390_23	UniRef90	UniRef90_UPI0019604BA7	phage holin, LLH family	NA
UHGV-0115390_23	eggNOG-mapper	1121472.AQWN01000009_gene420	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0115390_23	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0115390_23	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0115390_24	UniRef90	UniRef90_A0A8D9PDT6	Transcriptional regulatory protein	NA
UHGV-0115390_25	eggNOG-mapper	445972.ANACOL_01878	NA	NA
UHGV-0115390_27	PHROG	phrog_16490	NA	unknown function
UHGV-0115390_27	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0115390_28	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0115390_29	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0115390_31	UniRef90	UniRef90_A0A847E3M6	Ribbon-helix-helix protein, CopG family	NA
UHGV-0115390_31	Pfam	PF08681	NA	DUF1778
UHGV-0115390_31	Structural annotation	PF03869, NF010256, COG4877	NA	NA
UHGV-0115390_34	PHROG	phrog_7245	anti-restriction protein	moron, auxiliary metabolic gene and host takeover
UHGV-0115390_34	UniRef90	UniRef90_A0A7G9B1Q1	NA	NA
UHGV-0115390_34	eggNOG-mapper	97139.C824_00155	NA	NA
UHGV-0115390_34	Pfam	PF08401	N-terminal domain of anti-restriction factor ArdC	ArdcN
UHGV-0115390_34	Pfam	PF18818	Zincin-like metallopeptidase	MPTase-PolyVal
UHGV-0115390_34	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-0115390_34	Structural annotation	PF18818, PF08401, COG4227	NA	NA