UHGV-0115519

Genome information

Genome length 55,870 bps

CDS count 98

Completeness 100.00% (complete)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-0115519
vOTU ID	vOTU-045737
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_284873
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.3
Jumbo phage	No

Genome content
Genome length	55,870 bps
GC content	48.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	98
CDS density	84.49%
Average CDS length	483.92 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0115519_1	PHROG	phrog_14275	NA	unknown function
UHGV-0115519_1	eggNOG-mapper	1280676.AUJO01000001_gene2313	NA	NA
UHGV-0115519_1	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0115519_1	Structural annotation	PF13157, MF_01537, NF007875, COG3123	NA	NA
UHGV-0115519_2	PHROG	phrog_14275	NA	unknown function
UHGV-0115519_2	eggNOG-mapper	1280676.AUJO01000001_gene2313	NA	NA
UHGV-0115519_2	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0115519_2	Structural annotation	PF03843, MF_00984, TIGR00752, COG3065	NA	NA
UHGV-0115519_3	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0115519_3	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0115519_3	UniRef90	UniRef90_A0A1Y4EUA0	Bro-N domain-containing protein	NA
UHGV-0115519_3	eggNOG-mapper	1289596.M1PKL6_9CAUD	BRO family, N-terminal domain	NA
UHGV-0115519_3	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0115519_3	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0115519_3	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0115519_4	Structural annotation	PF19807, NF041793, COG4877	NA	NA
UHGV-0115519_6	UniRef90	UniRef90_A0A417DZ16	HTH cro/C1-type domain-containing protein	NA
UHGV-0115519_6	Pfam	PF13744	Helix-turn-helix domain	HTH_37
UHGV-0115519_6	Structural annotation	PF20075, TIGR02612, COG1396	NA	NA
UHGV-0115519_7	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0115519_7	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0115519_7	UniRef90	UniRef90_A0A3D0LYX8	Resolvase	NA
UHGV-0115519_7	eggNOG-mapper	1410633.JHWR01000012_gene95	Resolvase, N terminal domain	NA
UHGV-0115519_7	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0115519_7	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0115519_7	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0115519_10	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0115519_10	UniRef90	UniRef90_UPI000419A6BC	phage terminase large subunit	NA
UHGV-0115519_10	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0115519_10	COG	COG5410	NA	NA
UHGV-0115519_10	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0115519_13	PHROG	phrog_64	portal protein	head and packaging
UHGV-0115519_13	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0115519_13	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0115519_13	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0115519_13	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0115519_16	PHROG	phrog_29	major head protein	head and packaging
UHGV-0115519_16	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-0115519_16	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0115519_16	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0115519_16	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0115519_17	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0115519_17	Structural annotation	TIGR01560	NA	NA
UHGV-0115519_18	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0115519_20	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0115519_21	PHROG	phrog_158	major tail protein	tail
UHGV-0115519_21	UniRef90	UniRef90_UPI001D087591	phage tail protein	NA
UHGV-0115519_21	eggNOG-mapper	1449343.JQLQ01000002_gene1514	Phage tail tube protein, TTP	NA
UHGV-0115519_21	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0115519_22	UniRef90	UniRef90_UPI00164D364F	NA	NA
UHGV-0115519_22	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0115519_22	Pfam	PF16478	NA	DUF5055
UHGV-0115519_22	Structural annotation	PF16478	NA	NA
UHGV-0115519_23	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0115519_24	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0115519_24	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0115519_24	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0115519_25	PHROG	phrog_1194	NA	unknown function
UHGV-0115519_25	eggNOG-mapper	665956.HMPREF1032_03629	NA	NA
UHGV-0115519_25	Pfam	PF20458	NA	DUF6711
UHGV-0115519_25	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0115519_26	PHROG	phrog_13879	NA	unknown function
UHGV-0115519_26	UniRef90	UniRef90_A0A843H6J9	Dockerin type I repeat-containing protein	NA
UHGV-0115519_26	eggNOG-mapper	324057.Pjdr2_1554	NA	NA
UHGV-0115519_26	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0115519_27	PHROG	phrog_18725	NA	unknown function
UHGV-0115519_27	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0115519_29	PHROG	phrog_23587	NA	unknown function
UHGV-0115519_29	eggNOG-mapper	748224.HMPREF9436_00405	domain, Protein	NA
UHGV-0115519_29	COG	COG5492	NA	NA
UHGV-0115519_29	Structural annotation	MF_04106	NA	NA
UHGV-0115519_30	PHROG	phrog_9534	head protein	head and packaging
UHGV-0115519_30	COG	COG4675	Phage tail collar domain	NA
UHGV-0115519_32	Structural annotation	NF040910	NA	NA
UHGV-0115519_33	KOfam	K07273	acm; lysozyme	NA
UHGV-0115519_33	PHROG	phrog_291	endolysin	lysis
UHGV-0115519_33	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0115519_33	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0115519_33	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0115519_33	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0115519_33	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-0115519_34	PHROG	phrog_4105	NA	unknown function
UHGV-0115519_34	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-0115519_35	PHROG	phrog_15303	NA	unknown function
UHGV-0115519_39	PHROG	phrog_16490	NA	unknown function
UHGV-0115519_39	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0115519_40	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0115519_41	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0115519_42	Structural annotation	NF010188	NA	NA
UHGV-0115519_43	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0115519_43	UniRef90	UniRef90_A0A416EQL3	Bro-N domain-containing protein	NA
UHGV-0115519_43	eggNOG-mapper	1122146.AUHP01000010_gene1045	BRO family, N-terminal domain	NA
UHGV-0115519_43	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0115519_43	COG	COG3617	Prophage antirepressor	NA
UHGV-0115519_43	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0115519_44	eggNOG-mapper	1235802.C823_04889	NA	NA
UHGV-0115519_45	Structural annotation	PF07878	NA	NA
UHGV-0115519_47	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0115519_47	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0115519_47	UniRef90	UniRef90_A0A1C6BS15	Sporulation initiation inhibitor protein soj	NA
UHGV-0115519_47	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0115519_47	Pfam	PF13614	AAA domain	AAA_31
UHGV-0115519_47	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0115519_47	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0115519_49	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0115519_49	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0115519_49	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0115519_49	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0115519_49	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0115519_49	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0115519_49	Structural annotation	PF01051, PF21205, NF038290, COG5527	NA	NA
UHGV-0115519_50	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0115519_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0115519_50	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0115519_54	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0115519_54	UniRef90	UniRef90_UPI001D05D211	helix-turn-helix transcriptional regulator	NA
UHGV-0115519_54	eggNOG-mapper	693746.OBV_43290	addiction module antidote protein HigA	NA
UHGV-0115519_54	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0115519_54	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0115519_55	UniRef90	UniRef90_UPI001956DCC9	helix-turn-helix transcriptional regulator	NA
UHGV-0115519_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0115519_55	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0115519_56	Structural annotation	PF10922	NA	NA
UHGV-0115519_57	Structural annotation	TIGR03826	NA	NA
UHGV-0115519_59	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0115519_59	Structural annotation	PF13443, TIGR02684, COG1476	NA	NA
UHGV-0115519_60	Structural annotation	PF14143	NA	NA
UHGV-0115519_61	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0115519_61	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0115519_63	Pfam	PF13451	Probable zinc-ribbon domain	zf-trcl
UHGV-0115519_63	COG	COG4248	NA	NA
UHGV-0115519_63	Structural annotation	PF13451	NA	NA
UHGV-0115519_64	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0115519_64	UniRef90	UniRef90_A0A8J6JIF1	AAA family ATPase	NA
UHGV-0115519_64	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0115519_64	Pfam	PF13479	AAA domain	AAA_24
UHGV-0115519_64	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0115519_65	PHROG	phrog_18107	NA	unknown function
UHGV-0115519_65	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-0115519_65	eggNOG-mapper	903814.ELI_1274	NA	NA
UHGV-0115519_65	Structural annotation	PF05037	NA	NA
UHGV-0115519_68	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0115519_68	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0115519_68	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0115519_68	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0115519_72	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0115519_72	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0115519_72	UniRef90	UniRef90_A0A1Y4LU27	Adenylyl-sulfate reductase	NA
UHGV-0115519_72	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0115519_72	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0115519_72	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0115519_72	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0115519_72	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0115519_74	Structural annotation	MF_00085, NF003076, COG0231	NA	NA
UHGV-0115519_76	Pfam	PF04448	NA	DUF551
UHGV-0115519_76	Structural annotation	PF20331, COG5264	NA	NA
UHGV-0115519_77	Structural annotation	PF16677	NA	NA
UHGV-0115519_78	UniRef90	UniRef90_UPI0012DD33A2	restriction endonuclease subunit M	NA
UHGV-0115519_78	eggNOG-mapper	1121333.JMLH01000037_gene2007	restriction endonuclease	NA
UHGV-0115519_78	PADLOC	MTase_II_00176	Type II methyltransferase	RM
UHGV-0115519_78	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-0115519_85	Pfam	PF04448	NA	DUF551
UHGV-0115519_87	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0115519_87	UniRef90	UniRef90_A0A412AV49	Restriction alleviation protein, Lar family	NA
UHGV-0115519_87	eggNOG-mapper	1235790.C805_00069	Restriction alleviation protein Lar	NA
UHGV-0115519_87	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0115519_87	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0115519_87	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0115519_88	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0115519_88	Pfam	PF19808	NA	DUF6291
UHGV-0115519_88	Structural annotation	PF19808	NA	NA
UHGV-0115519_89	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0115519_89	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0115519_89	UniRef90	UniRef90_A0A564SBR1	Replicative DNA helicase	NA
UHGV-0115519_89	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0115519_89	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0115519_89	COG	COG0305	Replicative DNA helicase	NA
UHGV-0115519_89	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0115519_90	PHROG	phrog_419	NA	unknown function
UHGV-0115519_90	UniRef90	UniRef90_A6MAI4	Gp119	NA
UHGV-0115519_90	eggNOG-mapper	768486.EHR_02665	NA	NA
UHGV-0115519_90	Structural annotation	PF14083	NA	NA
UHGV-0115519_91	PHROG	phrog_1709	NA	unknown function
UHGV-0115519_91	eggNOG-mapper	1280686.AUKE01000002_gene1328	NA	NA
UHGV-0115519_94	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0115519_94	eggNOG-mapper	1408437.JNJN01000010_gene1241	NA	NA