UHGV-0115543

Genome information

Genome length 42,118 bps

CDS count 57

Completeness 98.96% (high-quality)

geNomad score 0.9632

Prediction confidence Confident

Genome information
Genome ID	UHGV-0115543
vOTU ID	vOTU-014457
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_286126
BioSample	SAMEA4378291
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.96% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9632
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	73.66
Jumbo phage	No

Genome content
Genome length	42,118 bps
GC content	33.81%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	95.14%
Average CDS length	707.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0115543_1	PHROG	phrog_36767	NA	unknown function
UHGV-0115543_1	UniRef90	UniRef90_A0A7W2AIK3	NA	NA
UHGV-0115543_1	eggNOG-mapper	471223.GWCH70_3245	NA	NA
UHGV-0115543_1	Pfam	PF10049	NA	DUF2283
UHGV-0115543_2	UniRef90	UniRef90_A0A0J0VAD1	PBECR2 domain-containing protein	NA
UHGV-0115543_2	eggNOG-mapper	471223.GWCH70_3246	NA	NA
UHGV-0115543_4	eggNOG-mapper	1035193.HMPREF9073_01445	NA	NA
UHGV-0115543_5	PHROG	phrog_19315	NA	unknown function
UHGV-0115543_5	UniRef90	UniRef90_UPI001F52B13C	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0115543_5	eggNOG-mapper	1121929.KB898688_gene10	Rubrerythrin	NA
UHGV-0115543_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0115543_5	Pfam	PF12773	Double zinc ribbon	DZR
UHGV-0115543_5	COG	COG1592	Rubrerythrin	NA
UHGV-0115543_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0115543_6	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0115543_6	UniRef90	UniRef90_UPI001D15B6CB	helix-turn-helix domain-containing protein	NA
UHGV-0115543_6	eggNOG-mapper	563038.HMPREF0851_00561	Peptidase S24-like	NA
UHGV-0115543_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0115543_6	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0115543_6	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-0115543_7	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0115543_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0115543_7	UniRef90	UniRef90_A0A4R1PX28	DNA-binding XRE family transcriptional regulator	NA
UHGV-0115543_7	eggNOG-mapper	438780.D2KRD7_9CAUD	sequence-specific DNA binding	NA
UHGV-0115543_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0115543_7	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0115543_9	eggNOG-mapper	679201.HMPREF9334_00299	NA	NA
UHGV-0115543_9	Structural annotation	PF02257	NA	NA
UHGV-0115543_11	UniRef90	UniRef90_H3K595	Excisionase family DNA binding domain-containing protein	NA
UHGV-0115543_14	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0115543_14	UniRef90	UniRef90_UPI00195DF457	NA	NA
UHGV-0115543_14	eggNOG-mapper	1274524.BSONL12_06023	NA	NA
UHGV-0115543_14	Pfam	PF10926	NA	DUF2800
UHGV-0115543_14	COG	COG2887	RecB family exonuclease	NA
UHGV-0115543_14	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0115543_15	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0115543_15	UniRef90	UniRef90_UPI001C39CB6B	NA	NA
UHGV-0115543_15	eggNOG-mapper	1540257.JQMW01000004_gene440	NA	NA
UHGV-0115543_15	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0115543_15	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0115543_16	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0115543_16	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0115543_16	UniRef90	UniRef90_H3K5A0	POLAc domain-containing protein	NA
UHGV-0115543_16	eggNOG-mapper	748727.CLJU_c36550	DNA polymerase	NA
UHGV-0115543_16	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0115543_16	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0115543_16	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0115543_18	PHROG	phrog_16315	NA	unknown function
UHGV-0115543_18	UniRef90	UniRef90_UPI001955FB87	PcfJ domain-containing protein	NA
UHGV-0115543_18	eggNOG-mapper	1262914.BN533_00797	PcfJ-like protein	NA
UHGV-0115543_18	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0115543_18	Structural annotation	PF14284	NA	NA
UHGV-0115543_19	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0115543_19	UniRef90	UniRef90_UPI001C3B820C	Virulence-associated E family protein	NA
UHGV-0115543_19	eggNOG-mapper	332101.JIBU02000048_gene3721	virulence-associated E family protein	NA
UHGV-0115543_19	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0115543_19	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0115543_19	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0115543_20	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0115543_20	UniRef90	UniRef90_H3K5A4	VRR-NUC domain-containing protein	NA
UHGV-0115543_20	eggNOG-mapper	411473.RUMCAL_00899	VRR_NUC	NA
UHGV-0115543_20	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0115543_20	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-0115543_21	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0115543_21	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0115543_21	UniRef90	UniRef90_H3K5A5	Helicase ATP-binding domain-containing protein	NA
UHGV-0115543_21	eggNOG-mapper	1408303.JNJJ01000049_gene2729	SNF2 family N-terminal domain	NA
UHGV-0115543_21	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0115543_21	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0115543_21	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0115543_21	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0115543_21	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0115543_25	KOfam	K07580	K07580; Zn-ribbon RNA-binding protein	NA
UHGV-0115543_26	eggNOG-mapper	1235793.C809_03021	NA	NA
UHGV-0115543_28	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0115543_28	UniRef90	UniRef90_UPI0015F333B0	phage terminase small subunit	NA
UHGV-0115543_28	eggNOG-mapper	1232428.CAVO010000021_gene808	DNA packaging	NA
UHGV-0115543_28	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0115543_28	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0115543_28	COG	COG5484	NA	NA
UHGV-0115543_28	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0115543_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0115543_29	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0115543_29	UniRef90	UniRef90_H3K5B0	PBSX family phage terminase, large subunit	NA
UHGV-0115543_29	eggNOG-mapper	1123511.KB905868_gene187	Phage terminase large subunit	NA
UHGV-0115543_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0115543_29	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0115543_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0115543_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0115543_29	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0115543_30	PHROG	phrog_64	portal protein	head and packaging
UHGV-0115543_30	UniRef90	UniRef90_H3K5B1	SPP1 family phage portal protein	NA
UHGV-0115543_30	eggNOG-mapper	1273103.NM10_01084	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0115543_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0115543_30	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0115543_31	PHROG	phrog_29127	NA	unknown function
UHGV-0115543_31	eggNOG-mapper	568816.Acin_1384	NA	NA
UHGV-0115543_32	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0115543_32	PHROG	phrog_819	tail protein	tail
UHGV-0115543_32	UniRef90	UniRef90_UPI001430CFAD	collagen-like protein	NA
UHGV-0115543_32	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0115543_32	COG	COG5295	Autotransporter adhesin	NA
UHGV-0115543_33	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0115543_33	UniRef90	UniRef90_A0A378NUD8	Phage minor structural protein GP20	NA
UHGV-0115543_33	eggNOG-mapper	1273103.NM10_01074	Phage minor structural protein GP20	NA
UHGV-0115543_33	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0115543_33	Structural annotation	PF06810	NA	NA
UHGV-0115543_34	PHROG	phrog_247	major head protein	head and packaging
UHGV-0115543_34	UniRef90	UniRef90_UPI001CD50515	major capsid protein	NA
UHGV-0115543_34	eggNOG-mapper	1273103.NM10_01069	NA	NA
UHGV-0115543_34	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0115543_34	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0115543_35	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0115543_35	UniRef90	UniRef90_A0A378NSX8	NAD+--asparagine ADP-ribosyltransferase	NA
UHGV-0115543_35	eggNOG-mapper	1273103.NM10_01064	Phage Mu protein F like protein	NA
UHGV-0115543_35	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0115543_35	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0115543_35	COG	COG2369	NA	NA
UHGV-0115543_35	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0115543_37	PHROG	phrog_5479	NA	unknown function
UHGV-0115543_38	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0115543_38	eggNOG-mapper	1123250.KB908414_gene2106	NA	NA
UHGV-0115543_39	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0115543_39	eggNOG-mapper	1273103.NM10_01054	NA	NA
UHGV-0115543_39	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0115543_40	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0115543_40	UniRef90	UniRef90_A0A1G9QVC1	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0115543_40	eggNOG-mapper	1123250.KB908414_gene2108	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0115543_40	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0115543_40	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0115543_41	PHROG	phrog_525	NA	unknown function
UHGV-0115543_41	eggNOG-mapper	1273103.NM10_01044	NA	NA
UHGV-0115543_41	Pfam	PF20765	NA	DUF6838
UHGV-0115543_41	Structural annotation	PF20765	NA	NA
UHGV-0115543_42	PHROG	phrog_1480	tail sheath	tail
UHGV-0115543_42	UniRef90	UniRef90_H3K5C1	Phage_sheath_1C domain-containing protein	NA
UHGV-0115543_42	eggNOG-mapper	1111454.HMPREF1250_0191	Phage tail sheath C-terminal domain	NA
UHGV-0115543_42	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0115543_42	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0115543_42	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0115543_43	PHROG	phrog_365	tail protein	tail
UHGV-0115543_43	UniRef90	UniRef90_A0A2A2ILG5	Terminase	NA
UHGV-0115543_43	eggNOG-mapper	1111454.HMPREF1250_0192	Phage tail tube protein	NA
UHGV-0115543_43	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0115543_43	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0115543_44	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0115543_44	UniRef90	UniRef90_U7UIV5	Phage XkdN-like domain protein	NA
UHGV-0115543_44	eggNOG-mapper	568816.Acin_1376	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0115543_44	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0115543_44	Structural annotation	PF08890	NA	NA
UHGV-0115543_45	PHROG	phrog_16692	NA	unknown function
UHGV-0115543_45	UniRef90	UniRef90_H3K5C4	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0115543_45	eggNOG-mapper	1273103.NM10_01024	Phage-related minor tail protein	NA
UHGV-0115543_45	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0115543_45	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0115543_45	COG	COG5283	Phage-related tail protein	NA
UHGV-0115543_45	Structural annotation	PF10145, TIGR01760, COG3941	NA	NA
UHGV-0115543_46	PHROG	phrog_380	endolysin	lysis
UHGV-0115543_46	UniRef90	UniRef90_UPI001CF423A1	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0115543_46	eggNOG-mapper	1123250.KB908414_gene2114	LysM domain	NA
UHGV-0115543_46	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0115543_46	Structural annotation	PF19266, TIGR01633, COG3499	NA	NA
UHGV-0115543_47	PHROG	phrog_400	tail protein	tail
UHGV-0115543_47	UniRef90	UniRef90_A0A848EUW7	Phage_lysozyme2 domain-containing protein	NA
UHGV-0115543_47	eggNOG-mapper	1273103.NM10_01014	NLP P60 protein	NA
UHGV-0115543_47	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0115543_47	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0115543_48	PHROG	phrog_579	NA	unknown function
UHGV-0115543_48	UniRef90	UniRef90_UPI001DAA9C69	NA	NA
UHGV-0115543_48	eggNOG-mapper	883156.HMPREF9282_00963	NA	NA
UHGV-0115543_48	Pfam	PF10844	NA	DUF2577
UHGV-0115543_48	Structural annotation	PF10844, TIGR00523	NA	NA
UHGV-0115543_49	PHROG	phrog_120	baseplate protein	tail
UHGV-0115543_49	UniRef90	UniRef90_UPI0014314BBF	NA	NA
UHGV-0115543_49	eggNOG-mapper	1273103.NM10_01004	NA	NA
UHGV-0115543_49	Pfam	PF10934	NA	DUF2634
UHGV-0115543_49	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0115543_50	PHROG	phrog_6	baseplate protein	tail
UHGV-0115543_50	UniRef90	UniRef90_H3K5D0	Baseplate_J domain-containing protein	NA
UHGV-0115543_50	eggNOG-mapper	883156.HMPREF9282_00965	Baseplate J-like protein	NA
UHGV-0115543_50	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0115543_50	COG	COG3299	NA	NA
UHGV-0115543_50	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0115543_51	PHROG	phrog_521	tail protein	tail
UHGV-0115543_51	UniRef90	UniRef90_UPI0019596FF9	NA	NA
UHGV-0115543_51	eggNOG-mapper	1111454.HMPREF1250_0200	NA	NA
UHGV-0115543_51	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0115543_51	COG	COG3778	NA	NA
UHGV-0115543_51	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0115543_52	eggNOG-mapper	1122925.KB895384_gene3124	Phage tail-collar fibre protein	NA
UHGV-0115543_52	Structural annotation	PF12571	NA	NA
UHGV-0115543_53	PHROG	phrog_18608	NA	unknown function
UHGV-0115543_53	eggNOG-mapper	1536772.R70723_29220	ATPase involved in DNA repair	NA
UHGV-0115543_53	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0115543_53	Structural annotation	PF18463, NF012201	NA	NA
UHGV-0115543_55	eggNOG-mapper	1200557.JHWV01000001_gene254	NA	NA
UHGV-0115543_57	KOfam	K14059	int; integrase	NA
UHGV-0115543_57	PHROG	phrog_1	integrase	integration and excision
UHGV-0115543_57	UniRef90	UniRef90_UPI001D094AB4	tyrosine-type recombinase/integrase	NA
UHGV-0115543_57	eggNOG-mapper	1200557.JHWV01000001_gene255	Phage integrase family	NA
UHGV-0115543_57	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0115543_57	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0115543_57	Structural annotation	PF00589, MF_01808, TIGR02224, COG4973	NA	NA