UHGV-0115576

Genome information

Genome length 36,546 bps

CDS count 59

Completeness 81.04% (medium-quality)

geNomad score 0.9818

Prediction confidence Confident

Genome information
Genome ID	UHGV-0115576
vOTU ID	vOTU-035031
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_298594
BioSample	SAMEA4431984
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.04% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9818
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.3
Jumbo phage	No

Genome content
Genome length	36,546 bps
GC content	40.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	87.33%
Average CDS length	543.76 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0115576_1	PHROG	phrog_28802	NA	unknown function
UHGV-0115576_1	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0115576_2	PHROG	phrog_20016	NA	unknown function
UHGV-0115576_2	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0115576_2	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0115576_2	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0115576_3	PHROG	phrog_16490	NA	unknown function
UHGV-0115576_3	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0115576_4	PHROG	phrog_22984	NA	unknown function
UHGV-0115576_5	PHROG	phrog_21718	NA	unknown function
UHGV-0115576_5	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0115576_6	AcrCatalog	cluster_37488	NA	NA
UHGV-0115576_7	UniRef90	UniRef90_S2ZLJ4	HTH cro/C1-type domain-containing protein	NA
UHGV-0115576_7	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-0115576_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0115576_8	Structural annotation	TIGR02096	NA	NA
UHGV-0115576_9	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-0115576_9	PHROG	phrog_2104	NA	unknown function
UHGV-0115576_9	UniRef90	UniRef90_A0A412ELA1	Helix-turn-helix domain-containing protein	NA
UHGV-0115576_9	eggNOG-mapper	1410625.JHWK01000002_gene45	Helix-turn-helix XRE-family like proteins	NA
UHGV-0115576_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0115576_9	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0115576_9	Structural annotation	PF01381, NF040522, COG2944	NA	NA
UHGV-0115576_10	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0115576_10	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0115576_11	PHROG	phrog_3754	NA	unknown function
UHGV-0115576_11	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0115576_12	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0115576_12	UniRef90	UniRef90_A0A395X791	Phage capsid protein	NA
UHGV-0115576_12	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0115576_12	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0115576_12	COG	COG2369	NA	NA
UHGV-0115576_12	Structural annotation	PF06152	NA	NA
UHGV-0115576_13	PHROG	phrog_533	portal protein	head and packaging
UHGV-0115576_13	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0115576_13	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0115576_13	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0115576_15	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0115576_15	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0115576_15	UniRef90	UniRef90_A0A6L8SYJ6	PBSX family phage terminase large subunit	NA
UHGV-0115576_15	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0115576_15	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0115576_15	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0115576_15	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0115576_15	COG	COG1783	Phage terminase large subunit	NA
UHGV-0115576_15	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0115576_16	PHROG	phrog_10714	NA	unknown function
UHGV-0115576_18	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-0115576_18	Structural annotation	PF09038	NA	NA
UHGV-0115576_22	PHROG	phrog_20593	NA	unknown function
UHGV-0115576_25	eggNOG-mapper	476272.RUMHYD_01751	NA	NA
UHGV-0115576_25	AcrCatalog	cluster_11670	NA	NA
UHGV-0115576_26	PHROG	phrog_15198	NA	unknown function
UHGV-0115576_26	UniRef90	UniRef90_UPI000E4C0B2A	NA	NA
UHGV-0115576_26	eggNOG-mapper	658655.HMPREF0988_00863	NA	NA
UHGV-0115576_26	Pfam	PF04448	NA	DUF551
UHGV-0115576_27	Structural annotation	PF17888	NA	NA
UHGV-0115576_29	COG	COG1545	NA	NA
UHGV-0115576_29	Structural annotation	NF041070	NA	NA
UHGV-0115576_30	eggNOG-mapper	411459.RUMOBE_01111	NA	NA
UHGV-0115576_31	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0115576_31	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0115576_31	UniRef90	UniRef90_A0A432YG98	Transcriptional regulator	NA
UHGV-0115576_31	eggNOG-mapper	1353537.TP2_06560	Helix-turn-helix XRE-family like proteins	NA
UHGV-0115576_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0115576_31	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0115576_31	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0115576_33	UniRef90	UniRef90_A0A412ELN5	LexA_DNA_bind domain-containing protein	NA
UHGV-0115576_33	eggNOG-mapper	1235799.C818_03301	LexA DNA binding domain	NA
UHGV-0115576_33	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0115576_33	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0115576_33	Structural annotation	PF01726, COG0640	NA	NA
UHGV-0115576_35	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0115576_35	UniRef90	UniRef90_A0A412EL97	NA	NA
UHGV-0115576_35	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-0115576_35	Pfam	PF06048	NA	DUF927
UHGV-0115576_35	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0115576_35	COG	COG5519	NA	NA
UHGV-0115576_35	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0115576_36	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0115576_36	PHROG	phrog_11992	NA	unknown function
UHGV-0115576_36	UniRef90	UniRef90_A0A395X7I4	DNA primase	NA
UHGV-0115576_36	eggNOG-mapper	476272.RUMHYD_01741	CHC2 zinc finger	NA
UHGV-0115576_36	PADLOC	drt-cluster192	DRT	DRT
UHGV-0115576_36	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0115576_36	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0115576_36	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0115576_37	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0115576_37	UniRef90	UniRef90_A0A395XB48	ERCC4 domain-containing protein	NA
UHGV-0115576_37	eggNOG-mapper	357809.Cphy_2986	NA	NA
UHGV-0115576_37	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0115576_37	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0115576_38	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0115576_38	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0115576_38	UniRef90	UniRef90_A0A412ELG8	Single-stranded DNA-binding protein	NA
UHGV-0115576_38	eggNOG-mapper	658655.HMPREF0988_02584	Single-strand binding protein family	NA
UHGV-0115576_38	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0115576_38	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0115576_38	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0115576_38	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0115576_38	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0115576_39	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0115576_39	UniRef90	UniRef90_A0A1V5UPJ3	ERF superfamily protein	NA
UHGV-0115576_39	eggNOG-mapper	929506.CbC4_1193	ERF superfamily	NA
UHGV-0115576_39	Pfam	PF04404	ERF superfamily	ERF
UHGV-0115576_39	Structural annotation	PF04404, TIGR00607, COG1978	NA	NA
UHGV-0115576_40	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0115576_41	Structural annotation	NF001645	NA	NA
UHGV-0115576_43	Structural annotation	PF10922, TIGR03741	NA	NA
UHGV-0115576_44	AcrCatalog	cluster_17974	NA	NA
UHGV-0115576_46	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0115576_46	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0115576_46	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0115576_50	UniRef90	UniRef90_A0A3R6RM60	XRE family transcriptional regulator	NA
UHGV-0115576_50	eggNOG-mapper	1298920.KI911353_gene527	NA	NA
UHGV-0115576_50	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0115576_51	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0115576_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0115576_51	UniRef90	UniRef90_A0A8J8SBE0	Helix-turn-helix transcriptional regulator	NA
UHGV-0115576_51	eggNOG-mapper	706434.HMPREF9429_00594	Helix-turn-helix XRE-family like proteins	NA
UHGV-0115576_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0115576_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0115576_52	KOfam	K11641	natR; two-component system, LytTR family, response regulator NatR	NA
UHGV-0115576_52	PHROG	phrog_8810	NA	unknown function
UHGV-0115576_52	UniRef90	UniRef90_A0A395X907	Stage 0 sporulation protein A homolog	NA
UHGV-0115576_52	eggNOG-mapper	742740.HMPREF9474_03223	LytTr DNA-binding domain	NA
UHGV-0115576_52	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-0115576_52	Pfam	PF04397	LytTr DNA-binding domain	LytTR
UHGV-0115576_52	COG	COG3279	DNA-binding response regulator, LytR/AlgR family	NA
UHGV-0115576_52	Structural annotation	PF04397, PF00072, MF_00981, NF010684, COG3279	NA	NA
UHGV-0115576_53	PHROG	phrog_4431	NA	unknown function
UHGV-0115576_53	UniRef90	UniRef90_A0A412ELU3	SHOCT domain-containing protein	NA
UHGV-0115576_53	eggNOG-mapper	1449343.JQLQ01000002_gene1561	NA	NA
UHGV-0115576_53	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0115576_54	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0115576_54	PHROG	phrog_95	integrase	integration and excision
UHGV-0115576_54	UniRef90	UniRef90_A0A412ELC2	Recombinase family protein	NA
UHGV-0115576_54	eggNOG-mapper	33035.JPJF01000109_gene439	Resolvase, N terminal domain	NA
UHGV-0115576_54	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0115576_54	Pfam	PF07508	Recombinase	Recombinase
UHGV-0115576_54	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0115576_54	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0115576_54	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0115576_55	KOfam	K07273	acm; lysozyme	NA
UHGV-0115576_55	PHROG	phrog_291	endolysin	lysis
UHGV-0115576_55	UniRef90	UniRef90_A0A1C5RZF8	Autolytic lysozyme	NA
UHGV-0115576_55	eggNOG-mapper	1121115.AXVN01000006_gene2170	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-0115576_55	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0115576_55	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0115576_55	Structural annotation	PF01183, PF18342, PF14603, NF040678, TIGR04303, COG3757, COG3807	NA	NA
UHGV-0115576_57	PHROG	phrog_6616	tail protein	tail
UHGV-0115576_57	UniRef90	UniRef90_A0A395X7B3	Peptidase S74 domain-containing protein	NA
UHGV-0115576_57	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0115576_57	Structural annotation	PF05113, PF18432, NF033848, NF011735, COG4379	NA	NA
UHGV-0115576_58	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0115576_59	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0115576_59	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-0115576_59	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0115576_59	COG	COG1511	NA	NA
UHGV-0115576_59	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA