UHGV-0115607

Genome information

Genome length 29,118 bps

CDS count 44

Completeness 78.52% (medium-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0115607
vOTU ID	vOTU-031094
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_280893
BioSample	SAMEA3888893
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.52% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.3
Jumbo phage	No

Genome content
Genome length	29,118 bps
GC content	58.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	91.68%
Average CDS length	610.71 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0115607_2	Structural annotation	NF012201	NA	NA
UHGV-0115607_3	PHROG	phrog_521	tail protein	tail
UHGV-0115607_3	UniRef90	UniRef90_A0A415ZGE0	NA	NA
UHGV-0115607_3	eggNOG-mapper	536232.CLM_1676	NA	NA
UHGV-0115607_3	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0115607_3	COG	COG3778	NA	NA
UHGV-0115607_3	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0115607_4	PHROG	phrog_6	baseplate protein	tail
UHGV-0115607_4	UniRef90	UniRef90_A0A415ZGA0	Baseplate J protein	NA
UHGV-0115607_4	eggNOG-mapper	1203606.HMPREF1526_01353	Baseplate J-like protein	NA
UHGV-0115607_4	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0115607_4	COG	COG3299	NA	NA
UHGV-0115607_4	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0115607_5	UniRef90	UniRef90_A0A3E2XWS6	NA	NA
UHGV-0115607_5	eggNOG-mapper	318464.IO99_13685	NA	NA
UHGV-0115607_5	Pfam	PF10934	NA	DUF2634
UHGV-0115607_5	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0115607_5	Structural annotation	PF10934, MF_02010, NF010728, COG4381	NA	NA
UHGV-0115607_6	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0115607_6	UniRef90	UniRef90_A0A3E2XXG2	Terminase large subunit	NA
UHGV-0115607_6	eggNOG-mapper	1007096.BAGW01000012_gene2374	Phage Terminase	NA
UHGV-0115607_6	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0115607_6	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0115607_6	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0115607_6	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0115607_7	Structural annotation	PF10844, MF_00216, TIGR00523, COG0361	NA	NA
UHGV-0115607_8	PHROG	phrog_400	tail protein	tail
UHGV-0115607_8	UniRef90	UniRef90_A0A3E2XWU2	CHAP domain-containing protein	NA
UHGV-0115607_8	eggNOG-mapper	500633.CLOHIR_00378	NLP P60 protein	NA
UHGV-0115607_8	Pfam	PF05257	CHAP domain	CHAP
UHGV-0115607_8	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0115607_8	Structural annotation	PF14594, PF00877, MF_02071, NF033848, COG4379, COG0791, COG3584	NA	NA
UHGV-0115607_9	PHROG	phrog_23201	NA	unknown function
UHGV-0115607_9	UniRef90	UniRef90_UPI000F05162E	phage portal protein	NA
UHGV-0115607_9	eggNOG-mapper	1120998.AUFC01000013_gene2949	LysM domain	NA
UHGV-0115607_9	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0115607_9	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-0115607_10	PHROG	phrog_8462	tail length tape measure protein	tail
UHGV-0115607_10	UniRef90	UniRef90_A0A1M6DPG2	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0115607_10	eggNOG-mapper	1203606.HMPREF1526_01348	phage tail tape measure protein	NA
UHGV-0115607_10	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0115607_10	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0115607_12	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0115607_12	eggNOG-mapper	1203606.HMPREF1526_01346	NA	NA
UHGV-0115607_12	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-0115607_13	Structural annotation	PF20765, TIGR01633, COG5003	NA	NA
UHGV-0115607_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0115607_14	UniRef90	UniRef90_UPI00189BF3BE	HK97 gp10 family phage protein	NA
UHGV-0115607_14	eggNOG-mapper	394503.Ccel_2953	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0115607_14	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0115607_14	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0115607_15	UniRef90	UniRef90_A0A417F5D6	Head-tail adaptor protein	NA
UHGV-0115607_15	eggNOG-mapper	97138.C820_00612	Phage head-tail adaptor	NA
UHGV-0115607_15	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0115607_15	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0115607_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0115607_16	UniRef90	UniRef90_A0A3E2XWS7	Phage gp6-like head-tail connector protein	NA
UHGV-0115607_16	eggNOG-mapper	195103.CPF_1583	Phage gp6-like head-tail connector protein	NA
UHGV-0115607_16	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0115607_16	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0115607_17	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0115607_17	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0115607_17	UniRef90	UniRef90_A0A416DH21	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0115607_17	eggNOG-mapper	1095750.HMPREF9970_2268	Belongs to the peptidase S14 family	NA
UHGV-0115607_17	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0115607_17	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0115607_17	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0115607_18	PHROG	phrog_365	tail protein	tail
UHGV-0115607_18	UniRef90	UniRef90_A0A3E2XWR4	Terminase	NA
UHGV-0115607_18	eggNOG-mapper	318464.IO99_13720	Phage tail tube protein	NA
UHGV-0115607_18	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0115607_18	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0115607_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-0115607_19	UniRef90	UniRef90_A0A415ZGH3	Phage major capsid protein	NA
UHGV-0115607_19	eggNOG-mapper	1111454.HMPREF1250_0251	phage major capsid protein, HK97 family	NA
UHGV-0115607_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0115607_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0115607_19	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0115607_19	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0115607_20	PHROG	phrog_1480	tail sheath	tail
UHGV-0115607_20	UniRef90	UniRef90_A0A416DH06	Phage tail protein	NA
UHGV-0115607_20	eggNOG-mapper	1203606.HMPREF1526_01344	Phage tail sheath C-terminal domain	NA
UHGV-0115607_20	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0115607_20	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0115607_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-0115607_21	UniRef90	UniRef90_A0A3E2XWZ9	Phage portal protein	NA
UHGV-0115607_21	eggNOG-mapper	171693.BN988_01606	Phage portal protein	NA
UHGV-0115607_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0115607_21	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0115607_21	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0115607_21	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0115607_26	PHROG	phrog_474	phosphofructokinase	other
UHGV-0115607_26	UniRef90	UniRef90_A0A3E2XXK5	NA	NA
UHGV-0115607_26	eggNOG-mapper	428125.CLOLEP_01367	NA	NA
UHGV-0115607_26	Pfam	PF19905	NA	DUF6378
UHGV-0115607_26	Structural annotation	PF19905	NA	NA
UHGV-0115607_27	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0115607_27	UniRef90	UniRef90_A0A417HFX2	Phage terminase small subunit P27 family	NA
UHGV-0115607_27	eggNOG-mapper	1007096.BAGW01000012_gene2373	Phage terminase, small subunit	NA
UHGV-0115607_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0115607_27	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0115607_27	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0115607_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0115607_28	Structural annotation	PF15188	NA	NA
UHGV-0115607_29	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0115607_29	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0115607_29	Structural annotation	PF01446	NA	NA
UHGV-0115607_30	PHROG	phrog_22543	NA	unknown function
UHGV-0115607_31	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0115607_31	PHROG	phrog_27290	NA	unknown function
UHGV-0115607_31	UniRef90	UniRef90_UPI001C01E910	ParB N-terminal domain-containing protein	NA
UHGV-0115607_31	eggNOG-mapper	693746.OBV_19860	ParB-like nuclease domain	NA
UHGV-0115607_31	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0115607_31	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0115607_31	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0115607_32	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0115607_32	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0115607_32	UniRef90	UniRef90_A0A417TPB6	ParA family protein	NA
UHGV-0115607_32	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0115607_32	Pfam	PF13614	AAA domain	AAA_31
UHGV-0115607_32	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0115607_32	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0115607_33	UniRef90	UniRef90_A0A417TN68	HTH_58 domain-containing protein	NA
UHGV-0115607_33	Structural annotation	PF02796	NA	NA
UHGV-0115607_34	Structural annotation	PF07870	NA	NA
UHGV-0115607_35	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0115607_35	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0115607_35	UniRef90	UniRef90_A0A3E2XWR1	DNA helicase	NA
UHGV-0115607_35	eggNOG-mapper	693746.OBV_27440	DnaB-like helicase N terminal domain	NA
UHGV-0115607_35	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0115607_35	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0115607_35	COG	COG0305	Replicative DNA helicase	NA
UHGV-0115607_35	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0115607_36	PHROG	phrog_11233	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0115607_36	UniRef90	UniRef90_H6LCD1	Bacteriophage-like protein	NA
UHGV-0115607_36	eggNOG-mapper	931626.Awo_c35220	DnaD domain protein	NA
UHGV-0115607_36	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0115607_36	Structural annotation	PF13463, TIGR01889, COG1846	NA	NA
UHGV-0115607_39	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0115607_39	UniRef90	UniRef90_A0A417HFZ8	XRE family transcriptional regulator	NA
UHGV-0115607_39	eggNOG-mapper	1203606.HMPREF1526_00992	Helix-turn-helix XRE-family like proteins	NA
UHGV-0115607_39	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0115607_39	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0115607_39	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0115607_40	UniRef90	UniRef90_A0A417F5Y8	DNA-binding protein	NA
UHGV-0115607_40	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0115607_41	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0115607_41	UniRef90	UniRef90_A0A417W5U6	XRE family transcriptional regulator	NA
UHGV-0115607_41	eggNOG-mapper	411467.BACCAP_01068	Helix-turn-helix	NA
UHGV-0115607_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0115607_41	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0115607_41	Structural annotation	PF01381, NF041951, COG1476	NA	NA