UHGV-0115616

Genome information

Genome length 33,185 bps

CDS count 44

Completeness 87.69% (medium-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-0115616
vOTU ID	vOTU-039181
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_283426
BioSample	SAMEA4378260
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.69% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.13
Jumbo phage	No

Genome content
Genome length	33,185 bps
GC content	32.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	93.59%
Average CDS length	708.75 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0115616_1	KOfam	K07488	K07488; transposase	NA
UHGV-0115616_1	PHROG	phrog_25593	NA	unknown function
UHGV-0115616_1	UniRef90	UniRef90_UPI00189AEF09	IS1595 family transposase	NA
UHGV-0115616_1	eggNOG-mapper	1050201.KB913034_gene527	transposition, DNA-mediated	NA
UHGV-0115616_1	Pfam	PF12760	Transposase zinc-ribbon domain	Zn_Tnp_IS1595
UHGV-0115616_1	Pfam	PF12762	ISXO2-like transposase domain	DDE_Tnp_IS1595
UHGV-0115616_1	NCBIFam	NF033547.1	IS1595 family transposase	NA
UHGV-0115616_1	COG	COG3677	Transposase InsA	NA
UHGV-0115616_1	Structural annotation	PF12762, PF03811, NF033547, COG3316	NA	NA
UHGV-0115616_2	KOfam	K19545	lnuA_C_D_E, lin; lincosamide nucleotidyltransferase A/C/D/E	NA
UHGV-0115616_2	UniRef90	UniRef90_A0A0R2GRT0	Putative aminoglycoside nucleotidyltransferase	NA
UHGV-0115616_2	eggNOG-mapper	1050201.KB913034_gene526	Aminoglycoside-2''-adenylyltransferase	NA
UHGV-0115616_2	Pfam	PF10706	Aminoglycoside-2''-adenylyltransferase	Aminoglyc_resit
UHGV-0115616_2	NCBIFam	NF000141.1	lincosamide nucleotidyltransferase Lnu(C)	NA
UHGV-0115616_2	COG	COG0617	tRNA nucleotidyltransferase/poly(A) polymerase	NA
UHGV-0115616_3	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0115616_3	PHROG	phrog_95	integrase	integration and excision
UHGV-0115616_3	UniRef90	UniRef90_UPI000983A7EB	recombinase family protein	NA
UHGV-0115616_3	eggNOG-mapper	536233.CLO_0500	resolvase	NA
UHGV-0115616_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0115616_3	Pfam	PF07508	Recombinase	Recombinase
UHGV-0115616_3	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0115616_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0115616_3	Structural annotation	PF00239, PF13408, PF14235, NF041201, COG1961, COG1579	NA	NA
UHGV-0115616_4	PHROG	phrog_87	metallo-protease	other
UHGV-0115616_4	UniRef90	UniRef90_A0A0A7FXK1	Peptidase_M78 domain-containing protein	NA
UHGV-0115616_4	eggNOG-mapper	1415775.U729_2577	Zn peptidase	NA
UHGV-0115616_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0115616_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0115616_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0115616_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0115616_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0115616_5	UniRef90	UniRef90_A0A6B4N8R4	Helix-turn-helix domain-containing protein	NA
UHGV-0115616_5	eggNOG-mapper	1415775.U729_2578	Helix-turn-helix XRE-family like proteins	NA
UHGV-0115616_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0115616_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0115616_6	UniRef90	UniRef90_A0A6B4RLC1	XRE family transcriptional regulator	NA
UHGV-0115616_6	eggNOG-mapper	1292035.H476_1036	NA	NA
UHGV-0115616_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0115616_6	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0115616_7	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0115616_7	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0115616_7	UniRef90	UniRef90_UPI001DC49909	phage antirepressor KilAC domain-containing protein	NA
UHGV-0115616_7	eggNOG-mapper	386415.NT01CX_2199	Phage antirepressor protein	NA
UHGV-0115616_7	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0115616_7	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0115616_7	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0115616_7	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0115616_11	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0115616_11	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0115616_11	UniRef90	UniRef90_A0A1V4IK80	Chromosome partition protein Smc	NA
UHGV-0115616_11	eggNOG-mapper	632245.CLP_1609	nuclear chromosome segregation	NA
UHGV-0115616_11	Pfam	PF13476	AAA domain	AAA_23
UHGV-0115616_11	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0115616_11	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0115616_12	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0115616_12	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0115616_12	UniRef90	UniRef90_C4IFA7	RecT protein	NA
UHGV-0115616_12	eggNOG-mapper	632245.CLP_1611	Recombinational DNA repair protein (RecE pathway)	NA
UHGV-0115616_12	Pfam	PF03837	RecT family	RecT
UHGV-0115616_12	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0115616_12	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0115616_12	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0115616_13	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0115616_13	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0115616_13	UniRef90	UniRef90_A0A6B4JP99	MBL fold metallo-hydrolase	NA
UHGV-0115616_13	eggNOG-mapper	536233.CLO_1801	Metallo-beta-lactamase superfamily	NA
UHGV-0115616_13	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0115616_13	dbAPIS	APIS058	NA	NA
UHGV-0115616_13	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0115616_13	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0115616_14	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0115616_14	UniRef90	UniRef90_A0A174F2L9	NA	NA
UHGV-0115616_14	eggNOG-mapper	999411.HMPREF1092_00892	DnaD domain protein	NA
UHGV-0115616_14	Pfam	PF11638	DnaA N-terminal domain	DnaA_N
UHGV-0115616_14	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0115616_14	Structural annotation	PF09681, PF17214, MF_01819, TIGR01714, COG5529	NA	NA
UHGV-0115616_15	PHROG	phrog_8684	NA	unknown function
UHGV-0115616_15	UniRef90	UniRef90_UPI0009FDB781	YopX family protein	NA
UHGV-0115616_15	eggNOG-mapper	411477.PARMER_02066	YopX protein	NA
UHGV-0115616_15	Pfam	PF09643	YopX protein	YopX
UHGV-0115616_15	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0115616_15	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0115616_16	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0115616_16	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0115616_16	UniRef90	UniRef90_UPI00104286A2	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0115616_16	eggNOG-mapper	742733.HMPREF9469_00225	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0115616_16	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0115616_16	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0115616_16	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0115616_16	Structural annotation	PF01507, MF_00063, NF002537, COG0175	NA	NA
UHGV-0115616_17	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0115616_17	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0115616_17	UniRef90	UniRef90_UPI00058F1EB6	DNA cytosine methyltransferase	NA
UHGV-0115616_17	eggNOG-mapper	1499683.CCFF01000005_gene54	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-0115616_17	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0115616_17	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0115616_17	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0115616_17	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0115616_17	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0115616_19	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0115616_19	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0115616_19	UniRef90	UniRef90_A0A1T4YGY1	Holliday junction resolvase RusA (Prophage-encoded endonuclease)	NA
UHGV-0115616_19	eggNOG-mapper	1499683.CCFF01000014_gene3920	Endodeoxyribonuclease RusA	NA
UHGV-0115616_19	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0115616_19	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0115616_19	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0115616_21	PHROG	phrog_5164	NA	unknown function
UHGV-0115616_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0115616_22	UniRef90	UniRef90_A0A373NRA4	NA	NA
UHGV-0115616_22	eggNOG-mapper	1121289.JHVL01000007_gene2767	sigma factor activity	NA
UHGV-0115616_22	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0115616_22	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-0115616_24	PHROG	phrog_28892	NA	unknown function
UHGV-0115616_24	UniRef90	UniRef90_B1V2Q3	Putative lipoprotein	NA
UHGV-0115616_24	eggNOG-mapper	1211817.CCAT010000008_gene969	NA	NA
UHGV-0115616_25	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0115616_25	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0115616_25	UniRef90	UniRef90_UPI0017857CC8	HNH endonuclease	NA
UHGV-0115616_25	eggNOG-mapper	1280689.AUJC01000011_gene1516	endonuclease activity	NA
UHGV-0115616_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0115616_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0115616_26	PHROG	phrog_1066	NA	unknown function
UHGV-0115616_26	eggNOG-mapper	1382358.JHVN01000024_gene1703	NA	NA
UHGV-0115616_26	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0115616_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0115616_27	UniRef90	UniRef90_UPI0017835915	terminase large subunit	NA
UHGV-0115616_27	eggNOG-mapper	318464.IO99_13765	Terminase	NA
UHGV-0115616_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0115616_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0115616_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0115616_27	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0115616_28	PHROG	phrog_12	portal protein	head and packaging
UHGV-0115616_28	UniRef90	UniRef90_UPI0018AA26AE	phage portal protein	NA
UHGV-0115616_28	eggNOG-mapper	931276.Cspa_c10150	Portal protein	NA
UHGV-0115616_28	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0115616_28	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0115616_28	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0115616_29	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0115616_29	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0115616_29	UniRef90	UniRef90_UPI0019682414	Clp protease ClpP	NA
UHGV-0115616_29	eggNOG-mapper	1280689.AUJC01000011_gene1520	Belongs to the peptidase S14 family	NA
UHGV-0115616_29	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0115616_29	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0115616_29	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0115616_30	PHROG	phrog_10	major head protein	head and packaging
UHGV-0115616_30	UniRef90	UniRef90_UPI00041EF31C	phage major capsid protein	NA
UHGV-0115616_30	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0115616_30	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0115616_30	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0115616_30	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0115616_30	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0115616_31	PHROG	phrog_5223	neck protein	connector
UHGV-0115616_31	UniRef90	UniRef90_UPI0003FE9443	head-tail connector protein	NA
UHGV-0115616_31	eggNOG-mapper	1280689.AUJC01000011_gene1523	NA	NA
UHGV-0115616_31	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0115616_31	Structural annotation	TIGR01560	NA	NA
UHGV-0115616_32	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0115616_32	UniRef90	UniRef90_UPI0017807C43	phage head closure protein	NA
UHGV-0115616_32	eggNOG-mapper	1280689.AUJC01000011_gene1524	NA	NA
UHGV-0115616_32	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0115616_32	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0115616_33	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0115616_33	UniRef90	UniRef90_UPI0018984D6A	HK97 gp10 family phage protein	NA
UHGV-0115616_33	eggNOG-mapper	1280689.AUJC01000011_gene1525	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0115616_33	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0115616_33	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0115616_33	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0115616_34	PHROG	phrog_78	tail terminator	connector
UHGV-0115616_34	UniRef90	UniRef90_UPI0005D10765	NA	NA
UHGV-0115616_34	eggNOG-mapper	1121342.AUCO01000004_gene644	NA	NA
UHGV-0115616_34	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0115616_35	PHROG	phrog_88	major tail protein	tail
UHGV-0115616_35	UniRef90	UniRef90_L1QK33	Phage major tail protein, phi13 family	NA
UHGV-0115616_35	eggNOG-mapper	545697.HMPREF0216_00917	phage major tail protein	NA
UHGV-0115616_35	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0115616_35	COG	COG5492	NA	NA
UHGV-0115616_35	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0115616_36	PHROG	phrog_187	head-tail adaptor	connector
UHGV-0115616_36	eggNOG-mapper	1209989.TepiRe1_2597	NA	NA
UHGV-0115616_36	Structural annotation	PF06896	NA	NA
UHGV-0115616_37	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0115616_37	UniRef90	UniRef90_F4LTR8	PhageMin_Tail domain-containing protein	NA
UHGV-0115616_37	eggNOG-mapper	1280689.AUJC01000011_gene1530	tape measure	NA
UHGV-0115616_37	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0115616_37	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0115616_38	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0115616_38	UniRef90	UniRef90_UPI0004015C8C	phage tail tape measure protein	NA
UHGV-0115616_38	eggNOG-mapper	864178.E2ELJ5_9CAUD	peptidoglycan catabolic process	NA
UHGV-0115616_38	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0115616_38	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0115616_39	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0115616_39	UniRef90	UniRef90_UPI00189728CA	phage tail family protein	NA
UHGV-0115616_39	eggNOG-mapper	1280689.AUJC01000011_gene1531	phage tail	NA
UHGV-0115616_39	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0115616_39	COG	COG4722	Phage-related protein YomH	NA
UHGV-0115616_39	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0115616_40	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0115616_40	UniRef90	UniRef90_A0A174D559	Phage structural protein	NA
UHGV-0115616_40	eggNOG-mapper	999411.HMPREF1092_03309	Prophage endopeptidase tail	NA
UHGV-0115616_40	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0115616_40	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0115616_40	COG	COG4926	Phage-related protein	NA
UHGV-0115616_40	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0115616_41	eggNOG-mapper	556261.HMPREF0240_03316	GDSL-like Lipase/Acylhydrolase	NA
UHGV-0115616_42	PHROG	phrog_28957	NA	unknown function
UHGV-0115616_44	PHROG	phrog_199	holin	lysis
UHGV-0115616_44	UniRef90	UniRef90_A0A168E250	Holin family protein	NA
UHGV-0115616_44	eggNOG-mapper	1211817.CCAT010000039_gene115	Bacteriophage holin family	NA
UHGV-0115616_44	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0115616_44	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0115616_44	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0115616_44	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA