UHGV-0115662

Genome information

Genome length 33,042 bps

CDS count 39

Completeness 84.92% (medium-quality)

geNomad score 0.9766

Prediction confidence Confident

Genome information
Genome ID	UHGV-0115662
vOTU ID	vOTU-036571
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_287486
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.92% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9766
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.63
Jumbo phage	No

Genome content
Genome length	33,042 bps
GC content	39.37%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	94.01%
Average CDS length	798.31 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0115662_1	PHROG	phrog_16315	NA	unknown function
UHGV-0115662_1	UniRef90	UniRef90_X8H7N1	PcfJ-like protein	NA
UHGV-0115662_1	eggNOG-mapper	1401067.HMPREF0872_00420	PcfJ-like protein	NA
UHGV-0115662_1	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0115662_2	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0115662_2	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0115662_2	UniRef90	UniRef90_A0A096AL19	AAA_23 domain-containing protein	NA
UHGV-0115662_2	eggNOG-mapper	1401067.HMPREF0872_03485	nuclear chromosome segregation	NA
UHGV-0115662_2	Pfam	PF13476	AAA domain	AAA_23
UHGV-0115662_2	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0115662_2	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0115662_3	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0115662_3	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0115662_3	UniRef90	UniRef90_A0A096BYG9	Phage antirepressor protein	NA
UHGV-0115662_3	eggNOG-mapper	1401067.HMPREF0872_03480	BRO family, N-terminal domain	NA
UHGV-0115662_3	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0115662_3	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0115662_3	COG	COG3617	Prophage antirepressor	NA
UHGV-0115662_3	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0115662_4	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0115662_4	UniRef90	UniRef90_S4U0C4	RecT protein-like protein	NA
UHGV-0115662_4	eggNOG-mapper	563192.HMPREF0179_00147	NA	NA
UHGV-0115662_4	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0115662_5	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0115662_5	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0115662_5	UniRef90	UniRef90_W1V8U0	Lactamase_B domain-containing protein	NA
UHGV-0115662_5	eggNOG-mapper	1401067.HMPREF0872_03470	COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I	NA
UHGV-0115662_5	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0115662_5	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0115662_5	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0115662_6	PHROG	phrog_29533	NA	unknown function
UHGV-0115662_7	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0115662_7	UniRef90	UniRef90_A0A811GJH8	NA	NA
UHGV-0115662_7	eggNOG-mapper	1401067.HMPREF0872_03460	NA	NA
UHGV-0115662_7	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0115662_7	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0115662_7	Structural annotation	PF14297, TIGR01446, TIGR01714	NA	NA
UHGV-0115662_8	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0115662_8	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0115662_8	UniRef90	UniRef90_X8H949	IstB-like ATP-binding protein	NA
UHGV-0115662_8	eggNOG-mapper	1401067.HMPREF0872_00395	DNA-dependent DNA replication	NA
UHGV-0115662_8	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0115662_8	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0115662_8	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0115662_9	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0115662_9	UniRef90	UniRef90_D6KLF0	Prophage Lp2 protein 24	NA
UHGV-0115662_9	eggNOG-mapper	60520.HR47_13580	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0115662_9	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0115662_9	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0115662_10	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0115662_10	UniRef90	UniRef90_A0A2S7ZCM0	NA	NA
UHGV-0115662_10	eggNOG-mapper	883156.HMPREF9282_01229	NA	NA
UHGV-0115662_10	Pfam	PF14359	NA	DUF4406
UHGV-0115662_10	Structural annotation	PF14359, TIGR03646, COG3613	NA	NA
UHGV-0115662_11	PHROG	phrog_1558	NA	unknown function
UHGV-0115662_11	UniRef90	UniRef90_UPI000BB98A80	sigma-70 region 4 domain-containing protein	NA
UHGV-0115662_11	eggNOG-mapper	1401067.HMPREF0872_03430	NA	NA
UHGV-0115662_11	Structural annotation	TIGR01637, COG2739	NA	NA
UHGV-0115662_12	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0115662_12	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0115662_12	UniRef90	UniRef90_X8H8N9	Terminase small subunit	NA
UHGV-0115662_12	eggNOG-mapper	546273.VEIDISOL_00709	terminase, small subunit	NA
UHGV-0115662_12	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0115662_12	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0115662_12	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0115662_13	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0115662_13	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0115662_13	UniRef90	UniRef90_X8H7N8	Terminase, large subunit, PBSX family	NA
UHGV-0115662_13	eggNOG-mapper	546273.VEIDISOL_00710	Phage terminase, large subunit	NA
UHGV-0115662_13	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0115662_13	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0115662_13	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0115662_13	COG	COG1783	Phage terminase large subunit	NA
UHGV-0115662_13	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-0115662_13	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0115662_14	PHROG	phrog_145	portal protein	head and packaging
UHGV-0115662_14	UniRef90	UniRef90_F9MMJ7	Conserved domain protein	NA
UHGV-0115662_14	eggNOG-mapper	706434.HMPREF9429_00529	NA	NA
UHGV-0115662_14	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0115662_15	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0115662_15	UniRef90	UniRef90_W1VC85	Ntox50 domain-containing protein	NA
UHGV-0115662_15	eggNOG-mapper	706434.HMPREF9429_00528	NA	NA
UHGV-0115662_15	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0115662_15	Structural annotation	PF15542	NA	NA
UHGV-0115662_16	PHROG	phrog_1865	NA	unknown function
UHGV-0115662_16	Structural annotation	PF07073, MF_00436, TIGR02383, COG1923	NA	NA
UHGV-0115662_17	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0115662_17	UniRef90	UniRef90_U7UPM3	Phage minor structural protein GP20	NA
UHGV-0115662_17	eggNOG-mapper	706434.HMPREF9429_00526	NA	NA
UHGV-0115662_17	Structural annotation	PF06810	NA	NA
UHGV-0115662_18	PHROG	phrog_212	major head protein	head and packaging
UHGV-0115662_18	UniRef90	UniRef90_UPI001C2F3899	phage capsid protein	NA
UHGV-0115662_18	eggNOG-mapper	1122918.KB907248_gene4499	NA	NA
UHGV-0115662_18	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0115662_19	PHROG	phrog_15682	NA	unknown function
UHGV-0115662_20	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0115662_20	UniRef90	UniRef90_UPI000F8E0EA5	HK97 gp10 family phage protein	NA
UHGV-0115662_20	eggNOG-mapper	706434.HMPREF9429_00523	Phage virion morphogenesis	NA
UHGV-0115662_20	COG	COG5005	NA	NA
UHGV-0115662_20	Structural annotation	TIGR01725	NA	NA
UHGV-0115662_21	PHROG	phrog_19017	NA	unknown function
UHGV-0115662_21	eggNOG-mapper	706434.HMPREF9429_00522	NA	NA
UHGV-0115662_22	PHROG	phrog_18864	NA	unknown function
UHGV-0115662_22	eggNOG-mapper	706434.HMPREF9429_00521	NA	NA
UHGV-0115662_22	Structural annotation	PF06141, COG5003	NA	NA
UHGV-0115662_23	PHROG	phrog_1407	major tail protein	tail
UHGV-0115662_23	UniRef90	UniRef90_X8H8Q2	Phage major tail protein, TP901-1 family	NA
UHGV-0115662_23	eggNOG-mapper	706434.HMPREF9429_00520	Phage tail tube protein	NA
UHGV-0115662_23	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0115662_23	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0115662_23	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0115662_23	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0115662_24	eggNOG-mapper	1232428.CAVO010000021_gene798	NA	NA
UHGV-0115662_24	Structural annotation	PF19591	NA	NA
UHGV-0115662_25	PHROG	phrog_7377	NA	unknown function
UHGV-0115662_25	eggNOG-mapper	1123288.SOV_2c03530	NA	NA
UHGV-0115662_26	PHROG	phrog_12798	NA	unknown function
UHGV-0115662_26	UniRef90	UniRef90_W1V9U8	Tape measure protein	NA
UHGV-0115662_26	eggNOG-mapper	706434.HMPREF9429_00517	tape measure	NA
UHGV-0115662_26	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0115662_26	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0115662_26	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0115662_26	Structural annotation	PF20155, TIGR02675, COG3941	NA	NA
UHGV-0115662_27	PHROG	phrog_2913	glycoside hydrolase	other
UHGV-0115662_27	UniRef90	UniRef90_X8H6S9	PF09343 family protein	NA
UHGV-0115662_27	eggNOG-mapper	706434.HMPREF9429_00516	NA	NA
UHGV-0115662_27	Pfam	PF09343	NA	DUF2460
UHGV-0115662_27	COG	COG5448	NA	NA
UHGV-0115662_27	Structural annotation	PF09343, TIGR02217, COG5448	NA	NA
UHGV-0115662_28	PHROG	phrog_778	tail assembly protein	tail
UHGV-0115662_28	UniRef90	UniRef90_X8H8N4	TIGR02218 family protein	NA
UHGV-0115662_28	eggNOG-mapper	706434.HMPREF9429_00515	NA	NA
UHGV-0115662_28	Pfam	PF09931	NA	DUF2163
UHGV-0115662_28	Pfam	PF09356	Phage conserved hypothetical protein BR0599	Phage_BR0599
UHGV-0115662_28	NCBIFam	TIGR02218.1	phage conserved hypothetical protein BR0599	NA
UHGV-0115662_28	COG	COG5449	NA	NA
UHGV-0115662_28	Structural annotation	PF09931, PF09356, TIGR02218, COG5449	NA	NA
UHGV-0115662_29	KOfam	K13694	mepS, spr; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]	NA
UHGV-0115662_29	PHROG	phrog_329	minor tail protein	tail
UHGV-0115662_29	UniRef90	UniRef90_W1VEK1	NlpC/P60 domain-containing protein	NA
UHGV-0115662_29	eggNOG-mapper	706434.HMPREF9429_00514	cysteine-type peptidase activity	NA
UHGV-0115662_29	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0115662_29	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0115662_29	Structural annotation	PF00877, TIGR02219, COG0791	NA	NA
UHGV-0115662_30	PHROG	phrog_1101	tail protein	tail
UHGV-0115662_30	UniRef90	UniRef90_W1VC98	Phage-tail_3 domain-containing protein	NA
UHGV-0115662_30	eggNOG-mapper	706434.HMPREF9429_00513	domain protein	NA
UHGV-0115662_30	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0115662_30	COG	COG1511	NA	NA
UHGV-0115662_30	Structural annotation	PF13550, PF05895, NF040662, TIGR03503, COG4733	NA	NA
UHGV-0115662_31	PHROG	phrog_2427	NA	unknown function
UHGV-0115662_31	Structural annotation	PF21519	NA	NA
UHGV-0115662_32	PHROG	phrog_6061	NA	unknown function
UHGV-0115662_33	eggNOG-mapper	546273.VEIDISOL_01075	NA	NA
UHGV-0115662_33	Structural annotation	PF17813, NF038186	NA	NA
UHGV-0115662_34	PHROG	phrog_22483	NA	unknown function
UHGV-0115662_34	UniRef90	UniRef90_X8H8Q8	Collagen triple helix repeat protein	NA
UHGV-0115662_34	eggNOG-mapper	1128111.HMPREF0870_01752	NA	NA
UHGV-0115662_34	Structural annotation	PF17936, COG2372	NA	NA
UHGV-0115662_35	PHROG	phrog_199	holin	lysis
UHGV-0115662_35	UniRef90	UniRef90_X8H951	Holin family protein	NA
UHGV-0115662_35	eggNOG-mapper	883156.HMPREF9282_01264	Bacteriophage holin family	NA
UHGV-0115662_35	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0115662_35	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0115662_36	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0115662_36	PHROG	phrog_894	endolysin	lysis
UHGV-0115662_36	UniRef90	UniRef90_X8H7B8	PF05951 family protein	NA
UHGV-0115662_36	eggNOG-mapper	868595.Desca_1639	Peptidase M15A	NA
UHGV-0115662_36	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0115662_36	COG	COG3108	NA	NA
UHGV-0115662_36	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0115662_37	PHROG	phrog_18860	NA	unknown function
UHGV-0115662_39	PHROG	phrog_4085	NA	unknown function
UHGV-0115662_39	UniRef90	UniRef90_UPI00196136E6	NA	NA
UHGV-0115662_39	eggNOG-mapper	864565.HMPREF0379_0355	NA	NA
UHGV-0115662_39	Pfam	PF19807	NA	DUF6290
UHGV-0115662_39	Structural annotation	PF19807, NF041418, COG4710	NA	NA