UHGV-0115669

Genome information

Genome length 39,083 bps

CDS count 52

Completeness 67.67% (medium-quality)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-0115669
vOTU ID	vOTU-021536
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_287487
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.67% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.67
Jumbo phage	No

Genome content
Genome length	39,083 bps
GC content	38.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	86.69%
Average CDS length	653.83 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0115669_3	eggNOG-mapper	397290.C810_01347	NA	NA
UHGV-0115669_3	Structural annotation	PF18267	NA	NA
UHGV-0115669_5	PHROG	phrog_6246	NA	unknown function
UHGV-0115669_5	UniRef90	UniRef90_J3JSC0	Phi92_gp231	NA
UHGV-0115669_5	eggNOG-mapper	948870.J3JSC0_9CAUD	NA	NA
UHGV-0115669_5	Structural annotation	PF04937, NF041175	NA	NA
UHGV-0115669_6	UniRef90	UniRef90_UPI00156E5158	helix-turn-helix domain-containing protein	NA
UHGV-0115669_7	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0115669_8	eggNOG-mapper	318464.IO99_07375	NA	NA
UHGV-0115669_10	PHROG	phrog_17183	NA	unknown function
UHGV-0115669_10	eggNOG-mapper	1403313.AXBR01000024_gene4694	NA	NA
UHGV-0115669_11	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0115669_11	UniRef90	UniRef90_A0A285PT53	Prokaryotic membrane lipoprotein lipid attachment site profile	NA
UHGV-0115669_11	eggNOG-mapper	1235792.C808_00058	NA	NA
UHGV-0115669_12	Structural annotation	PF20384, TIGR02608	NA	NA
UHGV-0115669_14	UniRef90	UniRef90_UPI0011072322	NA	NA
UHGV-0115669_14	eggNOG-mapper	1256908.HMPREF0373_00479	NA	NA
UHGV-0115669_14	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0115669_15	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0115669_15	UniRef90	UniRef90_A0A3D4KYF7	DOD-type homing endonuclease domain-containing protein	NA
UHGV-0115669_15	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0115669_15	Pfam	PF14528	LAGLIDADG-like domain	LAGLIDADG_3
UHGV-0115669_15	COG	COG5410	NA	NA
UHGV-0115669_15	Structural annotation	PF05203, PF17289, MF_04147, MF_01420, NF033889, NF007072, COG5362, COG1372	NA	NA
UHGV-0115669_16	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0115669_16	UniRef90	UniRef90_A0A371AT86	NA	NA
UHGV-0115669_16	eggNOG-mapper	883081.HMPREF9698_01602	NA	NA
UHGV-0115669_16	Pfam	PF07374	NA	DUF1492
UHGV-0115669_16	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0115669_17	PHROG	phrog_64	portal protein	head and packaging
UHGV-0115669_17	UniRef90	UniRef90_UPI00156EA9F5	phage portal protein	NA
UHGV-0115669_17	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0115669_17	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0115669_17	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0115669_18	UniRef90	UniRef90_A0A7C7EK05	NA	NA
UHGV-0115669_19	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0115669_19	UniRef90	UniRef90_UPI001D096CC5	NA	NA
UHGV-0115669_19	eggNOG-mapper	398512.JQKC01000052_gene2672	NA	NA
UHGV-0115669_19	Pfam	PF17236	NA	DUF5309
UHGV-0115669_19	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0115669_19	Structural annotation	PF17236, PF18316, MF_04133, NF041162, COG4653	NA	NA
UHGV-0115669_20	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0115669_20	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0115669_21	PHROG	phrog_199	holin	lysis
UHGV-0115669_21	UniRef90	UniRef90_R7CBJ9	Toxin secretion/phage lysis holin	NA
UHGV-0115669_21	eggNOG-mapper	887325.HMPREF0381_0407	toxin secretion phage lysis holin	NA
UHGV-0115669_21	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0115669_21	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0115669_21	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0115669_21	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0115669_22	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0115669_22	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0115669_23	PHROG	phrog_1233	NA	unknown function
UHGV-0115669_23	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0115669_23	eggNOG-mapper	33035.JPJF01000106_gene3130	NA	NA
UHGV-0115669_24	eggNOG-mapper	1232453.BAIF02000058_gene1631	NA	NA
UHGV-0115669_24	AcrCatalog	cluster_24841	NA	NA
UHGV-0115669_25	Structural annotation	PF05657	NA	NA
UHGV-0115669_26	eggNOG-mapper	1298920.KI911353_gene2652	NA	NA
UHGV-0115669_26	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0115669_29	PHROG	phrog_28918	NA	unknown function
UHGV-0115669_29	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0115669_29	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0115669_30	PHROG	phrog_1194	NA	unknown function
UHGV-0115669_30	eggNOG-mapper	877414.ATWA01000001_gene917	NA	NA
UHGV-0115669_31	eggNOG-mapper	86416.Clopa_0591	Phage minor structural protein	NA
UHGV-0115669_31	COG	COG4926	Phage-related protein	NA
UHGV-0115669_33	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0115669_33	PHROG	phrog_670	endolysin	lysis
UHGV-0115669_33	UniRef90	UniRef90_A0A352SK06	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0115669_33	eggNOG-mapper	411490.ANACAC_00703	Ami_2	NA
UHGV-0115669_33	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0115669_33	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0115669_33	Structural annotation	PF01510, PF08239, MF_04111, NF008758, COG5632	NA	NA
UHGV-0115669_36	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0115669_36	UniRef90	UniRef90_A0A412SB20	XRE family transcriptional regulator	NA
UHGV-0115669_36	eggNOG-mapper	411462.DORLON_00819	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0115669_36	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0115669_36	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0115669_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0115669_37	UniRef90	UniRef90_A0A3R6TRW8	XRE family transcriptional regulator	NA
UHGV-0115669_37	eggNOG-mapper	655812.HMPREF0061_0222	Helix-turn-helix XRE-family like proteins	NA
UHGV-0115669_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0115669_37	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0115669_38	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0115669_38	UniRef90	UniRef90_A0A8E5Y3Q1	Phage antirepressor	NA
UHGV-0115669_38	eggNOG-mapper	445971.ANASTE_00714	BRO family, N-terminal domain	NA
UHGV-0115669_38	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0115669_38	COG	COG3617	Prophage antirepressor	NA
UHGV-0115669_38	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0115669_39	PHROG	phrog_22529	NA	unknown function
UHGV-0115669_39	UniRef90	UniRef90_UPI0009DA0326	3D domain-containing protein	NA
UHGV-0115669_39	eggNOG-mapper	877420.ATVW01000029_gene1358	3D domain	NA
UHGV-0115669_39	Pfam	PF06725	3D domain	3D
UHGV-0115669_39	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0115669_39	Structural annotation	PF06725, MF_02071, NF040675, COG3584	NA	NA
UHGV-0115669_41	PHROG	phrog_26861	NA	unknown function
UHGV-0115669_41	UniRef90	UniRef90_A0A410PU66	Single-stranded DNA-binding protein	NA
UHGV-0115669_41	eggNOG-mapper	608506.COB47_1094	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-0115669_41	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0115669_41	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0115669_41	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0115669_41	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0115669_42	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0115669_42	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0115669_42	UniRef90	UniRef90_A0A413Z5U6	AAA_23 domain-containing protein	NA
UHGV-0115669_42	eggNOG-mapper	1294142.CINTURNW_1008	nuclear chromosome segregation	NA
UHGV-0115669_42	Pfam	PF13476	AAA domain	AAA_23
UHGV-0115669_42	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0115669_42	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0115669_43	PHROG	phrog_4400	NA	unknown function
UHGV-0115669_43	eggNOG-mapper	886882.PPSC2_p0514	NA	NA
UHGV-0115669_43	dbAPIS	APIS008	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	NA
UHGV-0115669_43	Structural annotation	PF01743, MF_00957, TIGR01942, COG0617	NA	NA
UHGV-0115669_44	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-0115669_45	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0115669_45	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0115669_45	UniRef90	UniRef90_A0A3E2WWD7	Recombinase RecT	NA
UHGV-0115669_45	eggNOG-mapper	1298920.KI911353_gene2727	RecT family	NA
UHGV-0115669_45	Pfam	PF03837	RecT family	RecT
UHGV-0115669_45	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0115669_45	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0115669_45	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0115669_46	PHROG	phrog_4433	NA	unknown function
UHGV-0115669_46	eggNOG-mapper	886882.PPSC2_p0363	regulation of DNA-templated transcription, elongation	NA
UHGV-0115669_46	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0115669_46	Structural annotation	NF007410	NA	NA
UHGV-0115669_47	PHROG	phrog_25456	NA	unknown function
UHGV-0115669_48	KOfam	K06940	NA	NA
UHGV-0115669_48	PHROG	phrog_32498	NA	unknown function
UHGV-0115669_48	UniRef90	UniRef90_A0A3R6ASD4	YkgJ family cysteine cluster protein	NA
UHGV-0115669_48	eggNOG-mapper	397290.C810_01479	Putative zinc- or iron-chelating domain	NA
UHGV-0115669_48	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0115669_49	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0115669_49	UniRef90	UniRef90_C0CR26	HNHc domain-containing protein	NA
UHGV-0115669_49	eggNOG-mapper	767806.D7PQ37_9CAUD	HNH endonuclease	NA
UHGV-0115669_49	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0115669_49	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0115669_49	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0115669_49	Structural annotation	PF13392, PF07463	NA	NA
UHGV-0115669_50	eggNOG-mapper	1121098.HMPREF1534_01074	Metallo-beta-lactamase superfamily	NA
UHGV-0115669_50	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0115669_51	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0115669_51	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0115669_51	UniRef90	UniRef90_A0A173REW9	Beta-lactamase superfamily domain	NA
UHGV-0115669_51	eggNOG-mapper	658655.HMPREF0988_00882	Metallo-beta-lactamase superfamily	NA
UHGV-0115669_51	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0115669_51	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA