UHGV-0115670

Genome information

Genome length 31,352 bps

CDS count 46

Completeness 90.10% (high-quality)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-0115670
vOTU ID	vOTU-014680
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_291253
BioSample	SAMEA4378287
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.10% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.21
Jumbo phage	No

Genome content
Genome length	31,352 bps
GC content	59.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	90.67%
Average CDS length	620.54 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0115670_1	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0115670_1	UniRef90	UniRef90_UPI001A9ADF00	tape measure protein	NA
UHGV-0115670_1	eggNOG-mapper	509191.AEDB02000075_gene2802	phage tail tape measure protein	NA
UHGV-0115670_1	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0115670_1	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0115670_1	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0115670_2	PHROG	phrog_706	NA	unknown function
UHGV-0115670_2	UniRef90	UniRef90_D4K437	Bacteriophage Gp15 protein	NA
UHGV-0115670_2	eggNOG-mapper	718252.FP2_06590	Bacteriophage Gp15 protein	NA
UHGV-0115670_2	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0115670_2	Structural annotation	PF06854	NA	NA
UHGV-0115670_3	PHROG	phrog_4450	NA	unknown function
UHGV-0115670_3	Structural annotation	PF20378	NA	NA
UHGV-0115670_4	PHROG	phrog_820	major tail protein	tail
UHGV-0115670_4	eggNOG-mapper	718252.FP2_06610	NA	NA
UHGV-0115670_4	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0115670_5	PHROG	phrog_3266	tail completion	connector
UHGV-0115670_5	eggNOG-mapper	718252.FP2_06620	NA	NA
UHGV-0115670_5	Structural annotation	PF12691	NA	NA
UHGV-0115670_6	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0115670_6	UniRef90	UniRef90_UPI0016528549	minor capsid protein	NA
UHGV-0115670_6	eggNOG-mapper	718252.FP2_06630	Minor capsid protein	NA
UHGV-0115670_6	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0115670_6	Structural annotation	PF11114	NA	NA
UHGV-0115670_7	PHROG	phrog_3366	NA	unknown function
UHGV-0115670_7	Structural annotation	PF20536	NA	NA
UHGV-0115670_8	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0115670_9	PHROG	phrog_267	major head protein	head and packaging
UHGV-0115670_9	UniRef90	UniRef90_A0A0D8J2H9	p22 coat protein 5	NA
UHGV-0115670_9	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-0115670_9	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0115670_10	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0115670_10	UniRef90	UniRef90_D4K444	Phage minor structural protein GP20	NA
UHGV-0115670_10	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-0115670_10	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0115670_10	Structural annotation	PF06810	NA	NA
UHGV-0115670_12	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0115670_12	UniRef90	UniRef90_D4K446	Phage minor capsid protein 2	NA
UHGV-0115670_12	eggNOG-mapper	718252.FP2_06690	NA	NA
UHGV-0115670_12	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0115670_12	COG	COG2369	NA	NA
UHGV-0115670_12	Structural annotation	PF06152, PF12106	NA	NA
UHGV-0115670_13	PHROG	phrog_533	portal protein	head and packaging
UHGV-0115670_13	UniRef90	UniRef90_A0A7G9WF85	Phage portal protein	NA
UHGV-0115670_13	eggNOG-mapper	718252.FP2_06700	NA	NA
UHGV-0115670_13	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0115670_14	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0115670_14	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0115670_14	UniRef90	UniRef90_A0A844EGH8	PBSX family phage terminase large subunit	NA
UHGV-0115670_14	eggNOG-mapper	1449050.JNLE01000003_gene3895	phage terminase, large subunit, PBSX family	NA
UHGV-0115670_14	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0115670_14	COG	COG1783	Phage terminase large subunit	NA
UHGV-0115670_14	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0115670_15	PHROG	phrog_2412	NA	unknown function
UHGV-0115670_15	eggNOG-mapper	742738.HMPREF9460_02504	NA	NA
UHGV-0115670_16	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0115670_16	UniRef90	UniRef90_A0A6N7TNN9	NA	NA
UHGV-0115670_16	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-0115670_16	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0115670_17	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0115670_17	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0115670_17	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0115670_17	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0115670_18	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0115670_18	UniRef90	UniRef90_A0A291T890	DnaB_2 domain-containing protein	NA
UHGV-0115670_18	eggNOG-mapper	97139.C824_02821	NA	NA
UHGV-0115670_18	Pfam	PF00392	Bacterial regulatory proteins, gntR family	GntR
UHGV-0115670_18	Structural annotation	PF09681, MF_01819, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-0115670_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0115670_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0115670_19	UniRef90	UniRef90_UPI001D0F2FBF	single-stranded DNA-binding protein	NA
UHGV-0115670_19	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0115670_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0115670_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0115670_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0115670_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0115670_19	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0115670_20	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0115670_20	UniRef90	UniRef90_UPI0011C8A287	recombinase RecT	NA
UHGV-0115670_20	eggNOG-mapper	33035.JPJF01000071_gene4462	NA	NA
UHGV-0115670_20	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0115670_22	eggNOG-mapper	665956.HMPREF1032_03597	DNA binding	NA
UHGV-0115670_22	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0115670_23	UniRef90	UniRef90_UPI001D0E65C2	NA	NA
UHGV-0115670_23	Structural annotation	PF12957	NA	NA
UHGV-0115670_25	UniRef90	UniRef90_A0A2A7BGV7	HTH cro/C1-type domain-containing protein	NA
UHGV-0115670_25	Pfam	PF05339	NA	DUF739
UHGV-0115670_25	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0115670_25	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0115670_27	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0115670_27	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0115670_27	UniRef90	UniRef90_A0A564SVW9	HTH-type transcriptional regulator ImmR	NA
UHGV-0115670_27	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0115670_27	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0115670_27	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0115670_27	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0115670_29	Structural annotation	PF16900, NF040991	NA	NA
UHGV-0115670_30	KOfam	K14059	int; integrase	NA
UHGV-0115670_30	PHROG	phrog_1	integrase	integration and excision
UHGV-0115670_30	UniRef90	UniRef90_A0A564SUY5	Tyrosine recombinase XerC	NA
UHGV-0115670_30	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-0115670_30	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0115670_30	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0115670_30	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0115670_32	PHROG	phrog_1281	NA	unknown function
UHGV-0115670_32	UniRef90	UniRef90_UPI00130E304C	NA	NA
UHGV-0115670_32	eggNOG-mapper	1321815.HMPREF9193_02066	NA	NA
UHGV-0115670_32	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0115670_32	COG	COG3600	NA	NA
UHGV-0115670_32	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0115670_33	PHROG	phrog_5763	NA	unknown function
UHGV-0115670_33	eggNOG-mapper	742740.HMPREF9474_04284	NA	NA
UHGV-0115670_34	PHROG	phrog_263	holin	lysis
UHGV-0115670_34	UniRef90	UniRef90_A0A564SW15	Phage lysis protein, holin	NA
UHGV-0115670_34	eggNOG-mapper	718252.FP2_06470	SPP1 phage holin	NA
UHGV-0115670_34	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0115670_34	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0115670_34	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0115670_35	PHROG	phrog_4105	NA	unknown function
UHGV-0115670_35	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-0115670_37	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0115670_37	PHROG	phrog_894	endolysin	lysis
UHGV-0115670_37	UniRef90	UniRef90_A0A564SWH3	Peptidase M15	NA
UHGV-0115670_37	eggNOG-mapper	718252.FP2_05470	Peptidase M15A	NA
UHGV-0115670_37	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0115670_37	COG	COG3108	NA	NA
UHGV-0115670_37	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0115670_38	KOfam	K07473	dinJ; DNA-damage-inducible protein J	NA
UHGV-0115670_38	PHROG	phrog_2737	NA	unknown function
UHGV-0115670_38	UniRef90	UniRef90_A0A2A7BEI9	Type II toxin-antitoxin system RelB/DinJ family antitoxin	NA
UHGV-0115670_38	eggNOG-mapper	718252.FP2_06500	Addiction module antitoxin, RelB DinJ family	NA
UHGV-0115670_38	Pfam	PF04221	RelB antitoxin	RelB
UHGV-0115670_38	NCBIFam	TIGR02384.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA
UHGV-0115670_38	COG	COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	NA
UHGV-0115670_38	Structural annotation	PF04221, TIGR02384, COG3077	NA	NA
UHGV-0115670_39	KOfam	K19158	yoeB; toxin YoeB [EC:3.1.-.-]	NA
UHGV-0115670_39	PHROG	phrog_1213	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0115670_39	UniRef90	UniRef90_A0A564SVN3	Putative mRNA interferase YoeB	NA
UHGV-0115670_39	eggNOG-mapper	718252.FP2_06510	YoeB-like toxin of bacterial type II toxin-antitoxin system	NA
UHGV-0115670_39	Pfam	PF06769	YoeB-like toxin of bacterial type II toxin-antitoxin system	YoeB_toxin
UHGV-0115670_39	NCBIFam	TIGR02116.1	Txe/YoeB family addiction module toxin	NA
UHGV-0115670_39	COG	COG4115	Toxin component of the Txe-Axe toxin-antitoxin module, Txe/YoeB family	NA
UHGV-0115670_39	Structural annotation	PF06769, TIGR02116, COG4115	NA	NA
UHGV-0115670_43	PHROG	phrog_9534	head protein	head and packaging
UHGV-0115670_43	eggNOG-mapper	748224.HMPREF9436_03323	COG NOG18825 non supervised orthologous group	NA
UHGV-0115670_43	Structural annotation	PF21567	NA	NA
UHGV-0115670_44	PHROG	phrog_538	minor tail protein	tail
UHGV-0115670_44	UniRef90	UniRef90_UPI0011064D4D	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0115670_44	eggNOG-mapper	748224.HMPREF9436_03324	NA	NA
UHGV-0115670_44	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0115670_44	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0115670_45	PHROG	phrog_36410	NA	unknown function
UHGV-0115670_45	UniRef90	UniRef90_UPI00130E98E0	phage tail family protein	NA
UHGV-0115670_45	eggNOG-mapper	748224.HMPREF9436_03325	Phage tail protein	NA
UHGV-0115670_45	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0115670_46	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0115670_46	eggNOG-mapper	748224.HMPREF9436_03326	Phage tail tape measure protein, TP901 family	NA
UHGV-0115670_46	COG	COG5283	Phage-related tail protein	NA