UHGV-0115688

Genome information

Genome length 28,229 bps

CDS count 49

Completeness 67.83% (medium-quality)

geNomad score 0.9733

Prediction confidence Confident

Genome information
Genome ID	UHGV-0115688
vOTU ID	vOTU-024022
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_284668
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.83% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9733
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.63
Jumbo phage	No

Genome content
Genome length	28,229 bps
GC content	28.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	91.45%
Average CDS length	528.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0115688_1	eggNOG-mapper	1111121.HMPREF1247_1245	NA	NA
UHGV-0115688_2	PHROG	phrog_3558	tail protein	tail
UHGV-0115688_2	UniRef90	UniRef90_UPI0004BA5C05	phage tail protein	NA
UHGV-0115688_2	eggNOG-mapper	1414720.CBYM010000001_gene709	Phage minor structural protein, N-terminal	NA
UHGV-0115688_2	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0115688_2	COG	COG4926	Phage-related protein	NA
UHGV-0115688_2	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-0115688_3	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0115688_3	UniRef90	UniRef90_UPI0004BC5A02	phage tail family protein	NA
UHGV-0115688_3	eggNOG-mapper	1414720.CBYM010000001_gene708	PFAM Phage tail protein	NA
UHGV-0115688_3	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0115688_3	COG	COG4722	Phage-related protein YomH	NA
UHGV-0115688_3	Structural annotation	PF20195, PF21621, TIGR01633, COG4722	NA	NA
UHGV-0115688_4	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0115688_4	UniRef90	UniRef90_A0A316MAJ5	TMP_3 domain-containing protein	NA
UHGV-0115688_4	eggNOG-mapper	1292035.H476_1006	tape measure	NA
UHGV-0115688_4	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0115688_4	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0115688_4	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0115688_4	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0115688_6	UniRef90	UniRef90_Q3ABK0	Conserved domain protein	NA
UHGV-0115688_6	eggNOG-mapper	1031288.AXAA01000048_gene774	NA	NA
UHGV-0115688_7	PHROG	phrog_1407	major tail protein	tail
UHGV-0115688_7	UniRef90	UniRef90_UPI00077FFDF9	phage tail tube protein	NA
UHGV-0115688_7	eggNOG-mapper	1329516.JPST01000014_gene664	Phage tail tube protein	NA
UHGV-0115688_7	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0115688_7	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0115688_7	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0115688_8	eggNOG-mapper	1031288.AXAA01000048_gene772	NA	NA
UHGV-0115688_8	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0115688_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0115688_9	UniRef90	UniRef90_A0A2R4N3B8	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0115688_9	eggNOG-mapper	1031288.AXAA01000048_gene771	NA	NA
UHGV-0115688_9	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0115688_9	Structural annotation	PF11114, TIGR01725, COG5005	NA	NA
UHGV-0115688_10	eggNOG-mapper	632518.Calow_0835	NA	NA
UHGV-0115688_10	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0115688_11	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0115688_11	eggNOG-mapper	1031288.AXAA01000048_gene769	NA	NA
UHGV-0115688_12	PHROG	phrog_2724	NA	unknown function
UHGV-0115688_12	UniRef90	UniRef90_A0A316MDU0	HeH domain-containing protein	NA
UHGV-0115688_12	eggNOG-mapper	946077.W5A_01875	This protein binds to 23S rRNA in the presence of protein L20	NA
UHGV-0115688_12	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0115688_12	COG	COG0261	Ribosomal protein L21	NA
UHGV-0115688_13	PHROG	phrog_422	major head protein	head and packaging
UHGV-0115688_13	UniRef90	UniRef90_A0A0B3VTN0	Capsid protein	NA
UHGV-0115688_13	eggNOG-mapper	1280689.AUJC01000003_gene967	NA	NA
UHGV-0115688_13	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0115688_14	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0115688_14	UniRef90	UniRef90_UPI00068F2B69	phage scaffolding protein	NA
UHGV-0115688_14	eggNOG-mapper	1444310.JANV01000162_gene1175	Phage minor structural protein GP20	NA
UHGV-0115688_14	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0115688_14	Structural annotation	PF06810	NA	NA
UHGV-0115688_15	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0115688_15	UniRef90	UniRef90_A0A316M9S4	Phage capsid protein	NA
UHGV-0115688_15	eggNOG-mapper	86416.Clopa_2539	Phage minor capsid protein 2	NA
UHGV-0115688_15	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0115688_16	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0115688_16	UniRef90	UniRef90_A0A415UCX1	NA	NA
UHGV-0115688_16	eggNOG-mapper	999411.HMPREF1092_00897	NA	NA
UHGV-0115688_16	Pfam	PF14359	NA	DUF4406
UHGV-0115688_16	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0115688_17	PHROG	phrog_64	portal protein	head and packaging
UHGV-0115688_17	UniRef90	UniRef90_A0A316MBD0	Phage portal protein	NA
UHGV-0115688_17	eggNOG-mapper	86416.Clopa_3381	PFAM Phage portal protein, SPP1 Gp6-like	NA
UHGV-0115688_17	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0115688_17	Structural annotation	PF05133, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-0115688_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0115688_18	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0115688_18	UniRef90	UniRef90_UPI001D019219	PBSX family phage terminase large subunit	NA
UHGV-0115688_18	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0115688_18	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0115688_18	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0115688_18	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0115688_18	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0115688_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-0115688_18	Structural annotation	PF04466, PF17288, PF06056, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0115688_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0115688_21	UniRef90	UniRef90_UPI0008D9EAA5	NA	NA
UHGV-0115688_21	eggNOG-mapper	262071.A3QSG8_9CAUD	NA	NA
UHGV-0115688_21	Pfam	PF07374	NA	DUF1492
UHGV-0115688_21	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0115688_22	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0115688_22	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0115688_22	UniRef90	UniRef90_UPI0008D9E31D	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0115688_22	eggNOG-mapper	1408823.AXUS01000024_gene2703	crossover junction endodeoxyribonuclease activity	NA
UHGV-0115688_22	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0115688_22	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0115688_22	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0115688_28	Structural annotation	PF13046	NA	NA
UHGV-0115688_29	eggNOG-mapper	1230342.CTM_11058	NA	NA
UHGV-0115688_31	UniRef90	UniRef90_UPI0009F68CA6	Spo0E family sporulation regulatory protein-aspartic acid phosphatase	NA
UHGV-0115688_31	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0115688_32	PHROG	phrog_173	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UHGV-0115688_32	UniRef90	UniRef90_UPI0008DA482F	dUTP diphosphatase	NA
UHGV-0115688_32	eggNOG-mapper	198467.NP92_02735	dUTPase	NA
UHGV-0115688_32	Pfam	PF08761	dUTPase	dUTPase_2
UHGV-0115688_32	COG	COG4508	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	NA
UHGV-0115688_32	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0115688_35	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0115688_35	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0115688_35	UniRef90	UniRef90_UPI0018A97110	ATP-binding protein	NA
UHGV-0115688_35	eggNOG-mapper	1292035.H476_1309	Bacterial dnaA protein	NA
UHGV-0115688_35	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0115688_35	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0115688_35	Structural annotation	PF01695, MF_01919, NF005378, COG1484	NA	NA
UHGV-0115688_36	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0115688_36	UniRef90	UniRef90_A0A848BJF0	Phage_rep_org_N domain-containing protein	NA
UHGV-0115688_36	eggNOG-mapper	1292035.H476_1030	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0115688_36	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0115688_36	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0115688_36	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0115688_36	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0115688_36	Structural annotation	PF01978, TIGR01714, COG3935	NA	NA
UHGV-0115688_37	PHROG	phrog_10056	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0115688_37	UniRef90	UniRef90_UPI0008D93F23	phage recombination protein Bet	NA
UHGV-0115688_37	eggNOG-mapper	272563.CD630_09170	Phage recombination protein Bet	NA
UHGV-0115688_37	Pfam	PF03837	RecT family	RecT
UHGV-0115688_37	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0115688_37	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0115688_37	Structural annotation	PF03837, PF16784, TIGR01913, COG3723	NA	NA
UHGV-0115688_38	PHROG	phrog_4500	NA	unknown function
UHGV-0115688_41	PHROG	phrog_4370	excisionase	integration and excision
UHGV-0115688_41	UniRef90	UniRef90_A0A1G9U323	DNA binding domain-containing protein, excisionase family	NA
UHGV-0115688_42	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0115688_42	UniRef90	UniRef90_UPI0009F3207E	ORF6N domain-containing protein	NA
UHGV-0115688_42	eggNOG-mapper	190478.Q8SBM8_9CAUD	DNA binding	NA
UHGV-0115688_42	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0115688_42	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0115688_43	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0115688_43	UniRef90	UniRef90_A0A6B4CNP3	Helix-turn-helix domain-containing protein	NA
UHGV-0115688_43	eggNOG-mapper	536232.CLM_3447	TRANSCRIPTIONal	NA
UHGV-0115688_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0115688_43	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0115688_43	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0115688_44	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0115688_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0115688_44	UniRef90	UniRef90_UPI000AA24184	helix-turn-helix domain-containing protein	NA
UHGV-0115688_44	eggNOG-mapper	1511.CLOST_1561	Helix-turn-helix XRE-family like proteins	NA
UHGV-0115688_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0115688_44	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0115688_45	PHROG	phrog_3364	NA	unknown function
UHGV-0115688_45	UniRef90	UniRef90_UPI0013D44121	ATP-binding protein	NA
UHGV-0115688_45	eggNOG-mapper	1122225.AULQ01000002_gene624	Histidine kinase	NA
UHGV-0115688_45	COG	COG0642	Signal transduction histidine kinase	NA
UHGV-0115688_45	Structural annotation	PF02518, PF01740, MF_00637, TIGR01925, TIGR00377, COG2172, COG1366	NA	NA
UHGV-0115688_46	UniRef90	UniRef90_UPI0012AF0E9E	STAS-like domain-containing protein	NA
UHGV-0115688_46	eggNOG-mapper	1122225.AULQ01000002_gene623	NA	NA
UHGV-0115688_46	Pfam	PF14213	NA	DUF4325
UHGV-0115688_46	Structural annotation	PF14213	NA	NA
UHGV-0115688_47	UniRef90	UniRef90_UPI0015620210	PIN domain-containing protein	NA
UHGV-0115688_47	eggNOG-mapper	269797.Mbar_A2117	Large family of predicted nucleotide-binding domains	NA
UHGV-0115688_47	Pfam	PF01850	PIN domain	PIN
UHGV-0115688_47	Structural annotation	PF01850, MF_00265, NF010285, COG1848	NA	NA
UHGV-0115688_48	PHROG	phrog_87	metallo-protease	other
UHGV-0115688_48	UniRef90	UniRef90_UPI0008D8DC60	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0115688_48	eggNOG-mapper	272563.CD630_13590	IrrE N-terminal-like domain	NA
UHGV-0115688_48	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0115688_48	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0115688_48	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0115688_49	KOfam	K14059	int; integrase	NA
UHGV-0115688_49	PHROG	phrog_1	integrase	integration and excision
UHGV-0115688_49	UniRef90	UniRef90_UPI00129DE34C	site-specific integrase	NA
UHGV-0115688_49	eggNOG-mapper	1522092.A0A090EUH1_9CAUD	Phage integrase family	NA
UHGV-0115688_49	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0115688_49	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0115688_49	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0115688_49	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA