UHGV-0115696

Genome information

Genome length 25,540 bps

CDS count 34

Completeness 63.70% (medium-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-0115696
vOTU ID	vOTU-027286
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_279882
BioSample	SAMEA3888912
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.70% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.48
Jumbo phage	No

Genome content
Genome length	25,540 bps
GC content	47.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	91.87%
Average CDS length	694.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0115696_1	UniRef90	UniRef90_A0A3B9DVA1	MYND-type domain-containing protein	NA
UHGV-0115696_2	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0115696_2	eggNOG-mapper	679201.HMPREF9334_00314	NA	NA
UHGV-0115696_2	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0115696_3	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0115696_3	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0115696_3	UniRef90	UniRef90_A0A3B9DUV7	Terminase small subunit	NA
UHGV-0115696_3	eggNOG-mapper	1273103.NM10_06811	terminase, small subunit	NA
UHGV-0115696_3	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0115696_3	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0115696_3	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0115696_4	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0115696_4	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0115696_4	UniRef90	UniRef90_R6AUD0	Phage terminase large subunit	NA
UHGV-0115696_4	eggNOG-mapper	1123511.KB905868_gene187	Phage terminase large subunit	NA
UHGV-0115696_4	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0115696_4	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0115696_4	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0115696_4	COG	COG1783	Phage terminase large subunit	NA
UHGV-0115696_4	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0115696_5	PHROG	phrog_145	portal protein	head and packaging
UHGV-0115696_5	UniRef90	UniRef90_R6B9Z5	Conserved domain protein	NA
UHGV-0115696_5	eggNOG-mapper	1232428.CAVO010000021_gene806	NA	NA
UHGV-0115696_5	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0115696_6	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0115696_6	UniRef90	UniRef90_R6AE12	TNT domain-containing protein	NA
UHGV-0115696_6	eggNOG-mapper	1273103.NM10_06796	NA	NA
UHGV-0115696_6	Pfam	PF14021	Tuberculosis necrotizing toxin	TNT
UHGV-0115696_6	Structural annotation	PF14021	NA	NA
UHGV-0115696_8	PHROG	phrog_3675	NA	unknown function
UHGV-0115696_8	UniRef90	UniRef90_R6AGU8	YjcQ protein	NA
UHGV-0115696_8	eggNOG-mapper	1118055.CAGU01000029_gene13	YjcQ protein	NA
UHGV-0115696_8	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0115696_8	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0115696_9	eggNOG-mapper	1280706.AUJE01000003_gene2260	NA	NA
UHGV-0115696_9	Structural annotation	PF06810	NA	NA
UHGV-0115696_10	PHROG	phrog_422	major head protein	head and packaging
UHGV-0115696_10	UniRef90	UniRef90_R6B9Z9	Gp7	NA
UHGV-0115696_10	eggNOG-mapper	1352230.S6AVV3_9CAUD	NA	NA
UHGV-0115696_10	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0115696_10	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0115696_11	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0115696_11	UniRef90	UniRef90_F9MMJ2	Phage protein, HK97 gp10 family	NA
UHGV-0115696_11	eggNOG-mapper	1232428.CAVO010000021_gene802	NA	NA
UHGV-0115696_11	Structural annotation	TIGR01725	NA	NA
UHGV-0115696_12	eggNOG-mapper	1000569.HMPREF1040_0193	NA	NA
UHGV-0115696_13	UniRef90	UniRef90_R6WK09	Conserved domain protein	NA
UHGV-0115696_13	eggNOG-mapper	1280706.AUJE01000003_gene2256	NA	NA
UHGV-0115696_13	Structural annotation	PF08873, COG5003	NA	NA
UHGV-0115696_14	PHROG	phrog_1407	major tail protein	tail
UHGV-0115696_14	UniRef90	UniRef90_R6AUD7	Phage major tail protein TP901-1 family	NA
UHGV-0115696_14	eggNOG-mapper	568816.Acin_1911	Phage tail tube protein	NA
UHGV-0115696_14	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0115696_14	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0115696_14	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0115696_14	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0115696_15	eggNOG-mapper	1111454.HMPREF1250_1052	NA	NA
UHGV-0115696_15	Structural annotation	PF19591	NA	NA
UHGV-0115696_16	eggNOG-mapper	1123288.SOV_2c03530	NA	NA
UHGV-0115696_17	PHROG	phrog_12798	NA	unknown function
UHGV-0115696_17	UniRef90	UniRef90_R6AN74	Tape measure domain protein	NA
UHGV-0115696_17	eggNOG-mapper	2754.EH55_13250	tape measure	NA
UHGV-0115696_17	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0115696_17	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0115696_17	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0115696_17	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0115696_18	PHROG	phrog_2913	glycoside hydrolase	other
UHGV-0115696_18	UniRef90	UniRef90_UPI000C7C1E73	NA	NA
UHGV-0115696_18	eggNOG-mapper	592028.GCWU000321_01387	NA	NA
UHGV-0115696_18	Pfam	PF09343	NA	DUF2460
UHGV-0115696_18	COG	COG5448	NA	NA
UHGV-0115696_18	Structural annotation	PF09343, TIGR02217, COG5448	NA	NA
UHGV-0115696_19	PHROG	phrog_778	tail assembly protein	tail
UHGV-0115696_19	UniRef90	UniRef90_R6AUE0	Conserved domain protein	NA
UHGV-0115696_19	eggNOG-mapper	592028.GCWU000321_01388	NA	NA
UHGV-0115696_19	Pfam	PF09931	NA	DUF2163
UHGV-0115696_19	COG	COG5449	NA	NA
UHGV-0115696_19	Structural annotation	PF09931, TIGR01600, COG4672	NA	NA
UHGV-0115696_20	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0115696_20	PHROG	phrog_329	minor tail protein	tail
UHGV-0115696_20	UniRef90	UniRef90_R6BA09	Cell wall-associated hydrolase	NA
UHGV-0115696_20	eggNOG-mapper	592028.GCWU000321_01389	NlpC/P60 family	NA
UHGV-0115696_20	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0115696_20	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0115696_20	Structural annotation	PF00877, TIGR02219, COG0791	NA	NA
UHGV-0115696_21	PHROG	phrog_1101	tail protein	tail
UHGV-0115696_21	UniRef90	UniRef90_R6AN79	Conserved domain protein	NA
UHGV-0115696_21	eggNOG-mapper	592028.GCWU000321_01390	Putative phage tail protein	NA
UHGV-0115696_21	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0115696_21	COG	COG1511	NA	NA
UHGV-0115696_21	Structural annotation	PF13550, PF16323, NF040662, NF010681, COG4733	NA	NA
UHGV-0115696_22	PHROG	phrog_2427	NA	unknown function
UHGV-0115696_22	eggNOG-mapper	910314.HMPREF9220_1082	NA	NA
UHGV-0115696_23	Structural annotation	PF20051	NA	NA
UHGV-0115696_24	PHROG	phrog_33356	NA	unknown function
UHGV-0115696_24	eggNOG-mapper	1232428.CAVO010000021_gene791	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0115696_24	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0115696_26	PHROG	phrog_199	holin	lysis
UHGV-0115696_26	UniRef90	UniRef90_R6AE25	Conserved domain protein	NA
UHGV-0115696_26	eggNOG-mapper	592028.GCWU000321_01470	Bacteriophage holin family	NA
UHGV-0115696_26	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0115696_26	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0115696_27	KOfam	K07273	acm; lysozyme	NA
UHGV-0115696_27	PHROG	phrog_291	endolysin	lysis
UHGV-0115696_27	UniRef90	UniRef90_R6AN85	Lyzozyme M1 (1 4-beta-N-acetylmuramidase)	NA
UHGV-0115696_27	eggNOG-mapper	1273103.NM10_01741	Glycosyl hydrolase family 25	NA
UHGV-0115696_27	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0115696_27	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0115696_27	Structural annotation	PF01183, NF008377, COG3757	NA	NA
UHGV-0115696_30	PHROG	phrog_3996	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0115696_30	UniRef90	UniRef90_S7IX76	Putative inner membrane protein	NA
UHGV-0115696_30	eggNOG-mapper	1273103.NM10_11541	NA	NA
UHGV-0115696_30	Pfam	PF10097	NA	DUF2335
UHGV-0115696_30	COG	COG5346	NA	NA
UHGV-0115696_30	Structural annotation	PF10097, COG5346	NA	NA
UHGV-0115696_32	PHROG	phrog_2655	excisionase	integration and excision
UHGV-0115696_32	UniRef90	UniRef90_A0A3B9DV76	HTH_59 domain-containing protein	NA
UHGV-0115696_32	eggNOG-mapper	1401067.HMPREF0872_03330	NA	NA
UHGV-0115696_32	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-0115696_32	Structural annotation	PF20038, TIGR01764	NA	NA
UHGV-0115696_33	UniRef90	UniRef90_A0A3A9SPQ1	Type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0115696_33	eggNOG-mapper	1280682.AUKA01000003_gene1373	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-0115696_33	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA