UHGV-0115773

Genome information

Genome length 48,784 bps

CDS count 76

Completeness 81.50% (medium-quality)

geNomad score 0.9756

Prediction confidence Confident

Genome information
Genome ID	UHGV-0115773
vOTU ID	vOTU-021037
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_293379
BioSample	SAMEA4431953
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.50% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9756
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	0.17
Jumbo phage	No

Genome content
Genome length	48,784 bps
GC content	37.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	76
CDS density	88.27%
Average CDS length	568.82 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0115773_1	UniRef90	UniRef90_UPI00094ED9E0	bacteriophage abortive infection AbiH family protein	NA
UHGV-0115773_1	eggNOG-mapper	1122217.KB899580_gene1655	Bacteriophage abortive infection AbiH	NA
UHGV-0115773_1	PADLOC	AbiH	AbiH	Abi
UHGV-0115773_1	Pfam	PF14253	Bacteriophage abortive infection AbiH	AbiH
UHGV-0115773_1	Structural annotation	PF14253	NA	NA
UHGV-0115773_5	PHROG	phrog_31631	NA	unknown function
UHGV-0115773_7	eggNOG-mapper	397290.C810_01353	NA	NA
UHGV-0115773_7	Structural annotation	PF16677	NA	NA
UHGV-0115773_13	Structural annotation	PF19865	NA	NA
UHGV-0115773_17	Pfam	PF10122	NA	Mu-like_Com
UHGV-0115773_17	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0115773_19	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0115773_19	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-0115773_19	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0115773_19	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0115773_19	COG	COG5410	NA	NA
UHGV-0115773_19	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0115773_20	PHROG	phrog_11237	NA	unknown function
UHGV-0115773_20	eggNOG-mapper	476272.RUMHYD_01941	NA	NA
UHGV-0115773_21	PHROG	phrog_64	portal protein	head and packaging
UHGV-0115773_21	UniRef90	UniRef90_UPI00156EA9F5	phage portal protein	NA
UHGV-0115773_21	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0115773_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0115773_21	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0115773_22	UniRef90	UniRef90_A0A7C7EK05	NA	NA
UHGV-0115773_23	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0115773_23	UniRef90	UniRef90_UPI001D096CC5	NA	NA
UHGV-0115773_23	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-0115773_23	Pfam	PF17236	NA	DUF5309
UHGV-0115773_23	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0115773_23	Structural annotation	PF17236, PF18316, MF_04133, NF041162, COG4653	NA	NA
UHGV-0115773_24	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0115773_24	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0115773_25	PHROG	phrog_2284	NA	unknown function
UHGV-0115773_25	Pfam	PF15956	NA	DUF4760
UHGV-0115773_26	eggNOG-mapper	1232453.BAIF02000058_gene1630	NA	NA
UHGV-0115773_26	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0115773_27	COG	COG1695	DNA-binding transcriptional regulator, PadR family	NA
UHGV-0115773_28	UniRef90	UniRef90_UPI0013EE076D	HK97 gp10 family phage protein	NA
UHGV-0115773_28	eggNOG-mapper	1232453.BAIF02000058_gene1631	NA	NA
UHGV-0115773_28	AcrCatalog	cluster_24841	NA	NA
UHGV-0115773_28	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0115773_29	Structural annotation	PF05657	NA	NA
UHGV-0115773_30	PHROG	phrog_158	major tail protein	tail
UHGV-0115773_30	UniRef90	UniRef90_A0A3A6HES5	Phage tail protein	NA
UHGV-0115773_30	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0115773_30	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0115773_33	PHROG	phrog_28918	NA	unknown function
UHGV-0115773_33	UniRef90	UniRef90_A0A318EME6	Phage-related protein	NA
UHGV-0115773_33	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0115773_33	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0115773_34	UniRef90	UniRef90_A0A1Q6KJY9	zinc_ribbon_2 domain-containing protein	NA
UHGV-0115773_34	eggNOG-mapper	1235800.C819_00970	response to antibiotic	NA
UHGV-0115773_34	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0115773_34	Pfam	PF12773	Double zinc ribbon	DZR
UHGV-0115773_34	COG	COG4640	NA	NA
UHGV-0115773_34	Structural annotation	NF041910	NA	NA
UHGV-0115773_35	PHROG	phrog_1194	NA	unknown function
UHGV-0115773_35	eggNOG-mapper	1298920.KI911353_gene4840	NA	NA
UHGV-0115773_35	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0115773_36	PHROG	phrog_13879	NA	unknown function
UHGV-0115773_36	eggNOG-mapper	742740.HMPREF9474_03516	NA	NA
UHGV-0115773_36	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0115773_37	Structural annotation	PF15911	NA	NA
UHGV-0115773_38	PHROG	phrog_18725	NA	unknown function
UHGV-0115773_38	eggNOG-mapper	585501.HMPREF6123_0822	NA	NA
UHGV-0115773_39	eggNOG-mapper	1298920.KI911353_gene4837	NA	NA
UHGV-0115773_40	PHROG	phrog_937	hemolysin	other
UHGV-0115773_41	PHROG	phrog_1129	holin	lysis
UHGV-0115773_41	UniRef90	UniRef90_A0A412KF76	Holin	NA
UHGV-0115773_41	eggNOG-mapper	1256908.HMPREF0373_00463	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0115773_41	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0115773_41	Structural annotation	PF06946	NA	NA
UHGV-0115773_42	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0115773_42	PHROG	phrog_435	endolysin	lysis
UHGV-0115773_42	UniRef90	UniRef90_UPI000E552B56	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0115773_42	eggNOG-mapper	1235800.C819_02218	PFAM Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0115773_42	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0115773_42	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0115773_42	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0115773_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0115773_46	UniRef90	UniRef90_A0A412SB20	XRE family transcriptional regulator	NA
UHGV-0115773_46	eggNOG-mapper	411462.DORLON_00819	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0115773_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0115773_46	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0115773_46	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0115773_47	PHROG	phrog_18248	transcriptional regulator	transcription regulation
UHGV-0115773_47	UniRef90	UniRef90_A0A3R6TRW8	XRE family transcriptional regulator	NA
UHGV-0115773_47	eggNOG-mapper	420890.LCGL_0312	Lactococcus bacteriophage repressor	NA
UHGV-0115773_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0115773_47	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0115773_49	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0115773_49	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0115773_49	UniRef90	UniRef90_R9KXP0	AntA domain-containing protein	NA
UHGV-0115773_49	eggNOG-mapper	397290.C810_01343	AntA/AntB antirepressor	NA
UHGV-0115773_49	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0115773_49	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0115773_49	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA
UHGV-0115773_50	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0115773_50	PHROG	phrog_37855	NA	unknown function
UHGV-0115773_50	UniRef90	UniRef90_A0A1Q6KA48	Spo0A_C domain-containing protein	NA
UHGV-0115773_50	eggNOG-mapper	658088.HMPREF0987_00133	May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process	NA
UHGV-0115773_50	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0115773_50	COG	COG2201	Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains	NA
UHGV-0115773_50	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-0115773_52	PHROG	phrog_19890	NA	unknown function
UHGV-0115773_52	UniRef90	UniRef90_UPI001C014972	transglycosylase SLT domain-containing protein	NA
UHGV-0115773_52	eggNOG-mapper	1410650.JHWL01000003_gene2854	lytic transglycosylase activity	NA
UHGV-0115773_52	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0115773_52	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0115773_52	Structural annotation	PF01464, MF_01381, NF011856, COG0741	NA	NA
UHGV-0115773_53	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0115773_53	PHROG	phrog_26861	NA	unknown function
UHGV-0115773_53	UniRef90	UniRef90_A0A173QZS6	Helix-destabilizing protein	NA
UHGV-0115773_53	eggNOG-mapper	622312.ROSEINA2194_00317	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-0115773_53	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0115773_53	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0115773_53	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0115773_53	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0115773_55	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0115773_55	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0115773_55	UniRef90	UniRef90_UPI001D02FD96	AAA family ATPase	NA
UHGV-0115773_55	eggNOG-mapper	1294142.CINTURNW_1008	nuclear chromosome segregation	NA
UHGV-0115773_55	Pfam	PF13476	AAA domain	AAA_23
UHGV-0115773_55	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0115773_55	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0115773_58	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-0115773_60	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0115773_60	UniRef90	UniRef90_UPI00157154DF	recombinase RecT	NA
UHGV-0115773_60	eggNOG-mapper	1232453.BAIF02000057_gene1136	NA	NA
UHGV-0115773_60	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0115773_61	PHROG	phrog_25456	NA	unknown function
UHGV-0115773_62	KOfam	K06940	NA	NA
UHGV-0115773_62	PHROG	phrog_32498	NA	unknown function
UHGV-0115773_62	UniRef90	UniRef90_A0A3R6ASD4	YkgJ family cysteine cluster protein	NA
UHGV-0115773_62	eggNOG-mapper	397290.C810_01479	Putative zinc- or iron-chelating domain	NA
UHGV-0115773_62	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0115773_62	Structural annotation	PF03692	NA	NA
UHGV-0115773_63	PHROG	phrog_15480	methyltransferase	other
UHGV-0115773_63	UniRef90	UniRef90_A0A1C5WPJ5	Spermidine synthase	NA
UHGV-0115773_63	eggNOG-mapper	1232447.BAHW02000015_gene1049	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine	NA
UHGV-0115773_63	COG	COG4262	Predicted spermidine synthase with an N-terminal membrane domain	NA
UHGV-0115773_63	Structural annotation	PF02527, MF_02217, NF041650, COG2263	NA	NA
UHGV-0115773_64	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0115773_64	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0115773_64	UniRef90	UniRef90_A0A173REW9	Beta-lactamase superfamily domain	NA
UHGV-0115773_64	eggNOG-mapper	1144313.PMI10_00501	Metallo-beta-lactamase superfamily	NA
UHGV-0115773_64	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0115773_64	dbAPIS	APIS058	NA	NA
UHGV-0115773_64	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0115773_64	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0115773_65	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0115773_65	eggNOG-mapper	1232453.BAIF02000057_gene1139	NA	NA
UHGV-0115773_66	PHROG	phrog_1029	NA	unknown function
UHGV-0115773_66	UniRef90	UniRef90_A0A3D5WKT6	Peptidase S59 domain-containing protein	NA
UHGV-0115773_66	eggNOG-mapper	1232453.BAIF02000057_gene1140	NA	NA
UHGV-0115773_66	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0115773_67	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0115773_67	UniRef90	UniRef90_A0A1Q9J756	ERCC4 domain-containing protein	NA
UHGV-0115773_67	eggNOG-mapper	1232453.BAIF02000057_gene1143	NA	NA
UHGV-0115773_67	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0115773_67	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0115773_68	PHROG	phrog_11769	NA	unknown function
UHGV-0115773_68	UniRef90	UniRef90_A0A173RDT0	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0115773_68	eggNOG-mapper	411470.RUMGNA_02197	phage replisome	NA
UHGV-0115773_68	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0115773_68	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0115773_68	Structural annotation	PF09681, TIGR01714, COG3756	NA	NA
UHGV-0115773_69	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0115773_69	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0115773_69	UniRef90	UniRef90_A0A1Q9J827	DNA helicase	NA
UHGV-0115773_69	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-0115773_69	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0115773_69	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0115773_69	COG	COG0305	Replicative DNA helicase	NA
UHGV-0115773_69	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0115773_74	UniRef90	UniRef90_A0A0F0C7A4	NA	NA
UHGV-0115773_74	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-0115773_75	PHROG	phrog_8684	NA	unknown function
UHGV-0115773_75	UniRef90	UniRef90_A0A6L6XDP0	YopX domain-containing protein	NA
UHGV-0115773_75	eggNOG-mapper	397290.C810_01526	YopX protein	NA
UHGV-0115773_75	Pfam	PF09643	YopX protein	YopX
UHGV-0115773_75	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0115773_75	Structural annotation	PF09643, TIGR01671	NA	NA