UHGV-0115838

Genome information

Genome length 33,175 bps

CDS count 58

Completeness 81.31% (medium-quality)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-0115838
vOTU ID	vOTU-032423
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_282767
BioSample	SAMEA3888905
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.31% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.76
Jumbo phage	No

Genome content
Genome length	33,175 bps
GC content	50.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	93.81%
Average CDS length	539.22 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0115838_2	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0115838_2	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0115838_2	UniRef90	UniRef90_A0A6N8H4T4	Single-stranded DNA-binding protein	NA
UHGV-0115838_2	eggNOG-mapper	657322.FPR_24250	Single-stranded DNA-binding protein	NA
UHGV-0115838_2	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0115838_2	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0115838_2	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0115838_2	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0115838_2	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0115838_3	PHROG	phrog_16304	NA	unknown function
UHGV-0115838_3	Pfam	PF19808	NA	DUF6291
UHGV-0115838_3	Structural annotation	PF19808	NA	NA
UHGV-0115838_4	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0115838_5	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0115838_5	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0115838_5	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0115838_5	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0115838_5	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0115838_5	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0115838_5	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0115838_6	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0115838_10	PHROG	phrog_7711	NA	unknown function
UHGV-0115838_10	eggNOG-mapper	886882.PPSC2_p0287	NA	NA
UHGV-0115838_11	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0115838_11	UniRef90	UniRef90_A0A316S635	Adenine methyltransferase	NA
UHGV-0115838_11	eggNOG-mapper	760568.Desku_0784	DNA N-6-adenine-methyltransferase	NA
UHGV-0115838_11	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0115838_11	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0115838_11	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-0115838_15	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0115838_15	eggNOG-mapper	658655.HMPREF0988_02569	sigma factor activity	NA
UHGV-0115838_15	Pfam	PF07374	NA	DUF1492
UHGV-0115838_15	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0115838_15	Structural annotation	PF04545, PF18323, MF_00674, NF009172, COG1191	NA	NA
UHGV-0115838_17	KOfam	K24451	zim; modification methylase	NA
UHGV-0115838_17	PHROG	phrog_12517	NA	unknown function
UHGV-0115838_17	UniRef90	UniRef90_UPI000BAF21E2	ParB N-terminal domain-containing protein	NA
UHGV-0115838_17	eggNOG-mapper	1035196.HMPREF9998_01728	NA	NA
UHGV-0115838_17	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0115838_17	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0115838_17	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0115838_17	COG	COG0863	DNA modification methylase	NA
UHGV-0115838_17	Structural annotation	PF02195, PF01170, MF_02015, MF_01872, TIGR01177, TIGR04285, COG1041, COG5119	NA	NA
UHGV-0115838_18	PHROG	phrog_27309	S-adenosylmethionine decarboxylase	other
UHGV-0115838_18	UniRef90	UniRef90_A0A1Q3GW65	Spermidine synthase	NA
UHGV-0115838_18	eggNOG-mapper	470145.BACCOP_01157	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine	NA
UHGV-0115838_18	Pfam	PF02675	S-adenosylmethionine decarboxylase	AdoMet_dc
UHGV-0115838_18	COG	COG1586	S-adenosylmethionine decarboxylase	NA
UHGV-0115838_18	Structural annotation	PF02675, MF_00464, TIGR03330, COG1586	NA	NA
UHGV-0115838_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0115838_20	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0115838_20	UniRef90	UniRef90_UPI001C3B9235	PBSX family phage terminase large subunit	NA
UHGV-0115838_20	eggNOG-mapper	411471.SUBVAR_06507	Phage terminase, large subunit, PBSX family	NA
UHGV-0115838_20	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0115838_20	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0115838_20	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0115838_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0115838_20	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0115838_21	PHROG	phrog_64	portal protein	head and packaging
UHGV-0115838_21	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0115838_21	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0115838_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0115838_21	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0115838_23	PHROG	phrog_8680	NA	unknown function
UHGV-0115838_23	UniRef90	UniRef90_UPI00189ACAD3	NA	NA
UHGV-0115838_23	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0115838_23	Pfam	PF14386	NA	DUF4417
UHGV-0115838_23	Structural annotation	PF14386	NA	NA
UHGV-0115838_25	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0115838_25	UniRef90	UniRef90_A0A3A9EHQ6	Phage_Mu_F domain-containing protein	NA
UHGV-0115838_25	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0115838_25	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0115838_25	COG	COG2369	NA	NA
UHGV-0115838_25	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0115838_28	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0115838_28	UniRef90	UniRef90_A0A3A9EIF3	HK97 gp10 family phage protein	NA
UHGV-0115838_28	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-0115838_28	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0115838_28	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0115838_28	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0115838_29	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0115838_29	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0115838_29	Structural annotation	PF06810	NA	NA
UHGV-0115838_30	PHROG	phrog_544	major head protein	head and packaging
UHGV-0115838_30	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0115838_30	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0115838_30	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0115838_32	PHROG	phrog_17977	NA	unknown function
UHGV-0115838_32	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0115838_32	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0115838_33	Structural annotation	PF11367	NA	NA
UHGV-0115838_34	PHROG	phrog_885	major tail protein	tail
UHGV-0115838_34	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0115838_34	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0115838_34	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0115838_35	PHROG	phrog_18646	NA	unknown function
UHGV-0115838_37	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0115838_37	UniRef90	UniRef90_A0A1P8BMM1	Tail tapemeasure protein	NA
UHGV-0115838_37	eggNOG-mapper	545697.HMPREF0216_02859	domain protein	NA
UHGV-0115838_37	COG	COG1511	NA	NA
UHGV-0115838_37	Structural annotation	PF20155	NA	NA
UHGV-0115838_38	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0115838_38	UniRef90	UniRef90_A0A7D4FJN5	HNH endonuclease	NA
UHGV-0115838_38	eggNOG-mapper	1423775.BAMN01000011_gene594	HNH endonuclease domain protein	NA
UHGV-0115838_38	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0115838_38	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0115838_38	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0115838_39	PHROG	phrog_5493	tail length tape measure protein	tail
UHGV-0115838_39	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0115838_39	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0115838_40	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0115838_40	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-0115838_40	eggNOG-mapper	1033737.CAEV01000029_gene285	Phage tail protein	NA
UHGV-0115838_40	COG	COG4722	Phage-related protein YomH	NA
UHGV-0115838_40	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0115838_41	PHROG	phrog_538	minor tail protein	tail
UHGV-0115838_41	eggNOG-mapper	665956.HMPREF1032_02940	NA	NA
UHGV-0115838_41	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0115838_41	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0115838_42	PHROG	phrog_9534	head protein	head and packaging
UHGV-0115838_42	eggNOG-mapper	864178.E2ELJ8_9CAUD	cell adhesion	NA
UHGV-0115838_42	Structural annotation	PF21567	NA	NA
UHGV-0115838_44	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0115838_44	Structural annotation	NF040910	NA	NA
UHGV-0115838_45	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0115838_45	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0115838_45	eggNOG-mapper	1120998.AUFC01000030_gene2248	NA	NA
UHGV-0115838_45	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0115838_47	KOfam	K07273	acm; lysozyme	NA
UHGV-0115838_47	PHROG	phrog_291	endolysin	lysis
UHGV-0115838_47	UniRef90	UniRef90_A0A1Q6T343	Peptidase_M23 domain-containing protein	NA
UHGV-0115838_47	eggNOG-mapper	877424.ATWC01000009_gene1193	Glycosyl hydrolases family 25	NA
UHGV-0115838_47	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0115838_47	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0115838_47	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0115838_47	Structural annotation	PF01551, PF01183, NF040883, COG0739, COG3757	NA	NA
UHGV-0115838_48	eggNOG-mapper	1042156.CXIVA_01580	NA	NA
UHGV-0115838_49	PHROG	phrog_13256	NA	unknown function
UHGV-0115838_49	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0115838_50	KOfam	K07684	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	NA
UHGV-0115838_50	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0115838_50	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0115838_51	PHROG	phrog_3754	NA	unknown function
UHGV-0115838_51	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0115838_52	PHROG	phrog_21718	NA	unknown function
UHGV-0115838_52	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0115838_53	PHROG	phrog_22984	NA	unknown function
UHGV-0115838_54	PHROG	phrog_16490	NA	unknown function
UHGV-0115838_54	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0115838_55	PHROG	phrog_20016	NA	unknown function
UHGV-0115838_55	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0115838_55	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0115838_55	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0115838_56	Structural annotation	PF12510	NA	NA
UHGV-0115838_57	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA