UHGV-0115849

Genome information

Genome length 34,671 bps

CDS count 54

Completeness 75.85% (medium-quality)

geNomad score 0.9785

Prediction confidence Confident

Genome information
Genome ID	UHGV-0115849
vOTU ID	vOTU-021142
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_302877
BioSample	NA
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.85% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9785
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.07
Jumbo phage	No

Genome content
Genome length	34,671 bps
GC content	49.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	89.34%
Average CDS length	574.61 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0115849_2	UniRef90	UniRef90_A0A644VI62	HTH cro/C1-type domain-containing protein	NA
UHGV-0115849_2	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0115849_2	Structural annotation	PF01381, NF007257, COG3655	NA	NA
UHGV-0115849_3	PHROG	phrog_4002	NA	unknown function
UHGV-0115849_3	UniRef90	UniRef90_UPI00189C26A3	NA	NA
UHGV-0115849_3	eggNOG-mapper	1492737.FEM08_28720	NA	NA
UHGV-0115849_3	Pfam	PF14730	NA	DUF4468
UHGV-0115849_3	Structural annotation	PF14730, TIGR03931	NA	NA
UHGV-0115849_4	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0115849_4	UniRef90	UniRef90_A0A6J7X176	DNA-packaging protein gp3	NA
UHGV-0115849_4	eggNOG-mapper	266835.14021430	DNA-packaging protein gp3	NA
UHGV-0115849_4	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0115849_4	Structural annotation	PF16677	NA	NA
UHGV-0115849_5	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0115849_5	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0115849_5	UniRef90	UniRef90_A0A497PCX3	Terminase	NA
UHGV-0115849_5	eggNOG-mapper	313596.RB2501_01375	Phage terminase large subunit	NA
UHGV-0115849_5	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0115849_5	COG	COG1783	Phage terminase large subunit	NA
UHGV-0115849_5	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0115849_6	PHROG	phrog_12	portal protein	head and packaging
UHGV-0115849_6	UniRef90	UniRef90_A0A5P2FZA3	Phage portal protein	NA
UHGV-0115849_6	eggNOG-mapper	449673.BACSTE_00582	Phage portal protein	NA
UHGV-0115849_6	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0115849_6	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0115849_7	KOfam	K06904	NA	NA
UHGV-0115849_7	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0115849_7	UniRef90	UniRef90_UPI000B385EC9	HK97 family phage prohead protease	NA
UHGV-0115849_7	eggNOG-mapper	449673.BACSTE_00581	Caudovirus prohead serine protease	NA
UHGV-0115849_7	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0115849_7	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0115849_7	COG	COG3740	Phage head maturation protease	NA
UHGV-0115849_7	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0115849_8	PHROG	phrog_10	major head protein	head and packaging
UHGV-0115849_13	Structural annotation	PF05561	NA	NA
UHGV-0115849_15	Structural annotation	PF19266, TIGR02126, COG5437	NA	NA
UHGV-0115849_16	PHROG	phrog_33698	NA	unknown function
UHGV-0115849_16	UniRef90	UniRef90_UPI001873A18B	BACON domain-containing protein	NA
UHGV-0115849_16	eggNOG-mapper	742767.HMPREF9456_03372	NA	NA
UHGV-0115849_16	Structural annotation	NF033848, COG4379	NA	NA
UHGV-0115849_17	PHROG	phrog_14295	NA	unknown function
UHGV-0115849_17	eggNOG-mapper	445970.ALIPUT_01650	NA	NA
UHGV-0115849_17	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0115849_18	PHROG	phrog_21217	NA	unknown function
UHGV-0115849_18	eggNOG-mapper	1121895.Q765_03305	NA	NA
UHGV-0115849_21	UniRef90	UniRef90_A0A5B3GAI3	LamG domain-containing protein	NA
UHGV-0115849_21	Structural annotation	PF13385, PF03944, PF16824, NF033675, COG3506	NA	NA
UHGV-0115849_23	Structural annotation	PF10043, NF008028	NA	NA
UHGV-0115849_24	PHROG	phrog_32423	NA	unknown function
UHGV-0115849_26	PHROG	phrog_873	endolysin	head and packaging
UHGV-0115849_26	UniRef90	UniRef90_UPI0018ABA41D	structural protein P5	NA
UHGV-0115849_26	eggNOG-mapper	411477.PARMER_01682	NA	NA
UHGV-0115849_27	Pfam	PF20647	NA	DUF6808
UHGV-0115849_27	Structural annotation	PF20647	NA	NA
UHGV-0115849_28	eggNOG-mapper	445970.ALIPUT_01633	Bacterial dnaA protein helix-turn-helix	NA
UHGV-0115849_28	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0115849_33	Structural annotation	PF10628	NA	NA
UHGV-0115849_35	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0115849_35	PHROG	phrog_1	integrase	integration and excision
UHGV-0115849_35	UniRef90	UniRef90_R7JKN8	Site-specific recombinase XerD	NA
UHGV-0115849_35	eggNOG-mapper	445970.ALIPUT_01190	Arm DNA-binding domain	NA
UHGV-0115849_35	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0115849_35	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0115849_35	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0115849_35	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0115849_35	Structural annotation	PF17293, PF13102, PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0115849_36	UniRef90	UniRef90_UPI000B5C1847	helix-turn-helix domain-containing protein	NA
UHGV-0115849_36	eggNOG-mapper	483216.BACEGG_03179	NA	NA
UHGV-0115849_40	PHROG	phrog_8684	NA	unknown function
UHGV-0115849_40	UniRef90	UniRef90_A0A3D1NR16	YopX domain-containing protein	NA
UHGV-0115849_40	eggNOG-mapper	762968.HMPREF9441_00543	YopX protein	NA
UHGV-0115849_40	Pfam	PF09643	YopX protein	YopX
UHGV-0115849_40	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0115849_40	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0115849_42	eggNOG-mapper	445970.ALIPUT_02677	NA	NA
UHGV-0115849_45	PHROG	phrog_874	NA	unknown function
UHGV-0115849_45	eggNOG-mapper	762968.HMPREF9441_00541	NA	NA
UHGV-0115849_45	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0115849_46	eggNOG-mapper	742725.HMPREF9450_02087	NA	NA
UHGV-0115849_49	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0115849_49	UniRef90	UniRef90_A0A5B5VMW7	Adenine methyltransferase	NA
UHGV-0115849_49	eggNOG-mapper	1567011.A0A0A7RUD1_9VIRU	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0115849_49	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0115849_49	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0115849_49	Structural annotation	PF05869, TIGR01712, COG0338	NA	NA
UHGV-0115849_52	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0115849_52	eggNOG-mapper	445970.ALIPUT_00030	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0115849_52	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0115849_52	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0115849_53	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0115849_53	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0115849_53	UniRef90	UniRef90_A0A143XJM5	PAPS_reduct domain-containing protein	NA
UHGV-0115849_53	eggNOG-mapper	1121098.HMPREF1534_01084	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0115849_53	PADLOC	SspD_00001	SspD	SSP
UHGV-0115849_53	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0115849_53	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0115849_53	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0115849_54	PHROG	phrog_9562	NA	unknown function
UHGV-0115849_54	UniRef90	UniRef90_UPI001D07F68D	pentapeptide repeat-containing protein	NA
UHGV-0115849_54	eggNOG-mapper	1226322.HMPREF1545_00011	Pentapeptide repeats (8 copies)	NA
UHGV-0115849_54	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0115849_54	Pfam	PF19062	NA	DUF5758
UHGV-0115849_54	COG	COG1357	NA	NA
UHGV-0115849_54	Structural annotation	PF19062	NA	NA