UHGV-0115980

Genome information

Genome length 31,647 bps

CDS count 40

Completeness 84.68% (medium-quality)

geNomad score 0.9759

Prediction confidence Confident

Genome information
Genome ID	UHGV-0115980
vOTU ID	vOTU-036183
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_283345
BioSample	SAMEA4378277
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.68% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9759
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.1
Jumbo phage	No

Genome content
Genome length	31,647 bps
GC content	28.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	88.95%
Average CDS length	706.20 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0115980_1	PHROG	phrog_25289	NA	unknown function
UHGV-0115980_1	UniRef90	UniRef90_A0A174F3X7	BRO domain protein	NA
UHGV-0115980_1	eggNOG-mapper	1414720.CBYM010000006_gene1178	Phage antirepressor protein KilAC domain	NA
UHGV-0115980_1	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0115980_1	COG	COG3617	Prophage antirepressor	NA
UHGV-0115980_3	UniRef90	UniRef90_A0A1C6HV05	Spo0E like sporulation regulatory protein	NA
UHGV-0115980_3	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0115980_4	eggNOG-mapper	536232.CLM_2565	NA	NA
UHGV-0115980_5	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0115980_5	UniRef90	UniRef90_UPI0010546233	YqaJ viral recombinase family protein	NA
UHGV-0115980_5	eggNOG-mapper	1443125.Z962_05755	YqaJ-like viral recombinase domain	NA
UHGV-0115980_5	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0115980_5	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0115980_5	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0115980_5	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0115980_6	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0115980_6	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0115980_6	UniRef90	UniRef90_A0A3P6KDM7	RecT family protein	NA
UHGV-0115980_6	eggNOG-mapper	195103.CPF_0939	RecT family	NA
UHGV-0115980_6	Pfam	PF03837	RecT family	RecT
UHGV-0115980_6	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0115980_6	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0115980_6	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0115980_7	PHROG	phrog_11769	NA	unknown function
UHGV-0115980_7	UniRef90	UniRef90_A0A7X3BW49	DnaD domain protein	NA
UHGV-0115980_7	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0115980_7	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0115980_7	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0115980_8	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0115980_8	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0115980_8	UniRef90	UniRef90_UPI0018AB275D	ATP-binding protein	NA
UHGV-0115980_8	eggNOG-mapper	1414720.CBYM010000040_gene1626	Bacterial dnaA protein	NA
UHGV-0115980_8	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0115980_8	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0115980_8	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0115980_8	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0115980_10	KOfam	K09777	remA; extracellular matrix regulatory protein A	NA
UHGV-0115980_10	UniRef90	UniRef90_UPI0004B7DE6E	NA	NA
UHGV-0115980_10	eggNOG-mapper	1414720.CBYM010000001_gene689	NA	NA
UHGV-0115980_10	Pfam	PF04025	Extracellular matrix regulatory protein A-like	RemA-like
UHGV-0115980_10	NCBIFam	NF003315.0	hypothetical protein	NA
UHGV-0115980_10	COG	COG2052	NA	NA
UHGV-0115980_10	Structural annotation	PF04025, MF_01503, NF003315, COG2052	NA	NA
UHGV-0115980_11	PHROG	phrog_9628	NA	unknown function
UHGV-0115980_11	UniRef90	UniRef90_A0A8I0DLJ3	DNA-binding response regulator	NA
UHGV-0115980_11	eggNOG-mapper	1414720.CBYM010000001_gene690	NA	NA
UHGV-0115980_11	Structural annotation	PF06056, COG2771	NA	NA
UHGV-0115980_13	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0115980_13	PHROG	phrog_216	integrase	integration and excision
UHGV-0115980_13	UniRef90	UniRef90_A0A1C6HZT4	Site-specific tyrosine recombinase XerC	NA
UHGV-0115980_13	eggNOG-mapper	1294142.CINTURNW_1679	Phage integrase family	NA
UHGV-0115980_13	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0115980_13	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0115980_13	Structural annotation	PF00589, MF_01807, NF040815, COG4974	NA	NA
UHGV-0115980_14	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0115980_14	UniRef90	UniRef90_A0A1U6JI04	Putative Phage protein	NA
UHGV-0115980_14	eggNOG-mapper	1305708.M9Q2K7_9CAUD	NA	NA
UHGV-0115980_14	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0115980_14	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0115980_14	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0115980_15	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0115980_15	PHROG	phrog_10250	NA	unknown function
UHGV-0115980_15	UniRef90	UniRef90_A0A1C6GX29	Phage terminase, large subunit, PBSX family	NA
UHGV-0115980_15	eggNOG-mapper	1305708.M9Q2I1_9CAUD	DNA packaging	NA
UHGV-0115980_15	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0115980_15	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0115980_16	PHROG	phrog_533	portal protein	head and packaging
UHGV-0115980_16	UniRef90	UniRef90_A0A1C6GX09	Phage portal protein, putative, A118 family	NA
UHGV-0115980_16	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0115980_16	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0115980_17	PHROG	phrog_25639	NA	unknown function
UHGV-0115980_17	eggNOG-mapper	585501.HMPREF6123_0841	NA	NA
UHGV-0115980_18	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0115980_18	UniRef90	UniRef90_A0A1C6GWM1	Phage minor capsid protein 2	NA
UHGV-0115980_18	eggNOG-mapper	742740.HMPREF9474_03503	Phage minor capsid protein 2	NA
UHGV-0115980_18	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0115980_18	COG	COG2369	NA	NA
UHGV-0115980_18	Structural annotation	PF06152	NA	NA
UHGV-0115980_19	PHROG	phrog_774	NA	unknown function
UHGV-0115980_19	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0115980_20	PHROG	phrog_918	NA	unknown function
UHGV-0115980_20	UniRef90	UniRef90_UPI0005DA7338	NA	NA
UHGV-0115980_20	eggNOG-mapper	1499683.CCFF01000014_gene3910	NA	NA
UHGV-0115980_20	Pfam	PF19791	NA	DUF6275
UHGV-0115980_20	Structural annotation	PF19791	NA	NA
UHGV-0115980_21	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0115980_21	UniRef90	UniRef90_A0A0N7BTJ7	NA	NA
UHGV-0115980_21	eggNOG-mapper	1391647.AVSV01000003_gene1807	NA	NA
UHGV-0115980_21	Structural annotation	PF10788	NA	NA
UHGV-0115980_22	PHROG	phrog_422	major head protein	head and packaging
UHGV-0115980_22	UniRef90	UniRef90_UPI000C07344A	capsid protein	NA
UHGV-0115980_22	eggNOG-mapper	1280692.AUJL01000027_gene2160	NA	NA
UHGV-0115980_22	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0115980_23	PHROG	phrog_1378	NA	unknown function
UHGV-0115980_23	UniRef90	UniRef90_A0A0B3VH35	HALZ domain-containing protein	NA
UHGV-0115980_23	eggNOG-mapper	1280692.AUJL01000027_gene2159	NA	NA
UHGV-0115980_24	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0115980_24	eggNOG-mapper	483218.BACPEC_01153	NA	NA
UHGV-0115980_25	PHROG	phrog_8710	NA	unknown function
UHGV-0115980_25	eggNOG-mapper	483218.BACPEC_01152	NA	NA
UHGV-0115980_25	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0115980_26	eggNOG-mapper	33035.JPJF01000093_gene2248	NA	NA
UHGV-0115980_26	Structural annotation	PF11114	NA	NA
UHGV-0115980_27	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0115980_27	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-0115980_27	eggNOG-mapper	1282664.H354_06686	NA	NA
UHGV-0115980_27	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0115980_27	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0115980_28	PHROG	phrog_820	major tail protein	tail
UHGV-0115980_28	eggNOG-mapper	394503.Ccel_3285	NA	NA
UHGV-0115980_28	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0115980_29	PHROG	phrog_8300	NA	unknown function
UHGV-0115980_29	eggNOG-mapper	1151292.QEW_2425	NA	NA
UHGV-0115980_29	Structural annotation	PF06896	NA	NA
UHGV-0115980_30	PHROG	phrog_8355	NA	unknown function
UHGV-0115980_30	UniRef90	UniRef90_A0A1C6K7X9	Bacteriophage Gp15 protein	NA
UHGV-0115980_30	eggNOG-mapper	1262449.CP6013_3207	NA	NA
UHGV-0115980_31	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0115980_31	UniRef90	UniRef90_A0A1C6GVH2	Phage-related protein	NA
UHGV-0115980_31	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0115980_31	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0115980_31	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0115980_32	PHROG	phrog_1194	NA	unknown function
UHGV-0115980_32	eggNOG-mapper	1280692.AUJL01000027_gene2149	NA	NA
UHGV-0115980_32	Pfam	PF20458	NA	DUF6711
UHGV-0115980_32	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0115980_33	PHROG	phrog_2566	NA	unknown function
UHGV-0115980_33	eggNOG-mapper	1294142.CINTURNW_1040	NA	NA
UHGV-0115980_34	PHROG	phrog_1401	NA	unknown function
UHGV-0115980_34	UniRef90	UniRef90_UPI0018A98488	NA	NA
UHGV-0115980_34	eggNOG-mapper	1294142.CINTURNW_1705	NA	NA
UHGV-0115980_34	Structural annotation	PF07761	NA	NA
UHGV-0115980_35	PHROG	phrog_16267	NA	unknown function
UHGV-0115980_35	UniRef90	UniRef90_U2NPC0	KID repeat-containing protein	NA
UHGV-0115980_35	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-0115980_35	COG	COG4926	Phage-related protein	NA
UHGV-0115980_35	Structural annotation	PF14594, PF21471, NF033848, NF012201, COG3500	NA	NA
UHGV-0115980_36	PHROG	phrog_18444	NA	unknown function
UHGV-0115980_36	eggNOG-mapper	1294142.CINTURNW_1043	NA	NA
UHGV-0115980_37	PHROG	phrog_199	holin	lysis
UHGV-0115980_37	UniRef90	UniRef90_UPI000509F802	phage holin family protein	NA
UHGV-0115980_37	eggNOG-mapper	1499684.CCNP01000023_gene3170	Bacteriophage holin family	NA
UHGV-0115980_37	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0115980_37	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0115980_37	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0115980_38	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0115980_38	PHROG	phrog_435	endolysin	lysis
UHGV-0115980_38	UniRef90	UniRef90_UPI0018A884BA	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0115980_38	eggNOG-mapper	1414720.CBYM010000002_gene552	Ami_3	NA
UHGV-0115980_38	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0115980_38	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0115980_38	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0115980_38	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, NF038080, COG0860, COG3409	NA	NA
UHGV-0115980_39	KOfam	K06926	NA	NA
UHGV-0115980_39	PHROG	phrog_4747	NA	unknown function
UHGV-0115980_39	UniRef90	UniRef90_A0A348YZK5	ATPase_AAA_core domain-containing protein	NA
UHGV-0115980_39	eggNOG-mapper	521460.Athe_0310	PFAM SMC domain protein	NA
UHGV-0115980_39	PADLOC	AAA_21	NA	NA
UHGV-0115980_39	Pfam	PF13304	AAA domain, putative AbiEii toxin, Type IV TA system	AAA_21
UHGV-0115980_39	COG	COG4637	Predicted ATPase	NA
UHGV-0115980_39	Structural annotation	PF13304, MF_00365, NF041760, COG4637	NA	NA
UHGV-0115980_40	UniRef90	UniRef90_A0A7C3MGP6	NA	NA
UHGV-0115980_40	eggNOG-mapper	1231241.Mc24_08439	NA	NA