UHGV-0116020

Genome information

Genome length 29,373 bps

CDS count 40

Completeness 83.38% (medium-quality)

geNomad score 0.9725

Prediction confidence Confident

Genome information
Genome ID	UHGV-0116020
vOTU ID	vOTU-030230
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_279956
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.38% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9725
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.71
Jumbo phage	No

Genome content
Genome length	29,373 bps
GC content	55.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	92.25%
Average CDS length	681.98 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0116020_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0116020_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0116020_1	UniRef90	UniRef90_A0A3D5IA24	Recombinase family protein	NA
UHGV-0116020_1	eggNOG-mapper	537013.CLOSTMETH_02040	NA	NA
UHGV-0116020_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0116020_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0116020_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0116020_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0116020_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0116020_2	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0116020_2	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0116020_2	UniRef90	UniRef90_A0A174XM30	Exonuclease RNase T and DNA polymerase III	NA
UHGV-0116020_2	eggNOG-mapper	1280696.ATVY01000079_gene215	EXOIII	NA
UHGV-0116020_2	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0116020_2	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0116020_2	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0116020_2	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0116020_2	COG	COG2176	DNA polymerase III, alpha subunit (gram-positive type)	NA
UHGV-0116020_2	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-0116020_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0116020_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0116020_3	UniRef90	UniRef90_A0A2J4JRR4	Helix-turn-helix domain-containing protein	NA
UHGV-0116020_3	eggNOG-mapper	411483.FAEPRAA2165_03041	NA	NA
UHGV-0116020_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0116020_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0116020_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0116020_3	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0116020_4	UniRef90	UniRef90_A0A533STR5	Helix-turn-helix transcriptional regulator	NA
UHGV-0116020_4	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-0116020_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0116020_4	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0116020_6	PHROG	phrog_585	NA	unknown function
UHGV-0116020_6	UniRef90	UniRef90_UPI001F52F0FC	NA	NA
UHGV-0116020_6	eggNOG-mapper	1423755.BAML01000004_gene410	NA	NA
UHGV-0116020_6	Pfam	PF10711	NA	DUF2513
UHGV-0116020_6	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0116020_11	PHROG	phrog_1733	NA	unknown function
UHGV-0116020_11	UniRef90	UniRef90_UPI001967A828	cell envelope integrity protein TolA	NA
UHGV-0116020_11	eggNOG-mapper	665956.HMPREF1032_03597	DNA binding	NA
UHGV-0116020_11	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0116020_11	Structural annotation	PF03677	NA	NA
UHGV-0116020_12	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0116020_13	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0116020_13	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0116020_14	PHROG	phrog_7566	NA	unknown function
UHGV-0116020_14	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0116020_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0116020_15	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0116020_15	UniRef90	UniRef90_UPI001F1C0E82	single-stranded DNA-binding protein	NA
UHGV-0116020_15	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-0116020_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0116020_15	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0116020_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0116020_15	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0116020_15	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0116020_16	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0116020_16	PHROG	phrog_16304	NA	unknown function
UHGV-0116020_16	UniRef90	UniRef90_U2R397	NA	NA
UHGV-0116020_16	eggNOG-mapper	1226322.HMPREF1545_00016	HNH endonuclease	NA
UHGV-0116020_16	Pfam	PF19808	NA	DUF6291
UHGV-0116020_16	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0116020_16	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0116020_16	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0116020_16	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0116020_17	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0116020_17	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0116020_17	UniRef90	UniRef90_A0A316NVS3	DNA helicase	NA
UHGV-0116020_17	eggNOG-mapper	693746.OBV_27440	DnaB-like helicase N terminal domain	NA
UHGV-0116020_17	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0116020_17	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0116020_17	COG	COG0305	Replicative DNA helicase	NA
UHGV-0116020_17	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0116020_18	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0116020_18	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0116020_18	UniRef90	UniRef90_UPI001958688A	ParA family protein	NA
UHGV-0116020_18	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-0116020_18	Pfam	PF13614	AAA domain	AAA_31
UHGV-0116020_18	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0116020_18	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0116020_19	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0116020_19	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0116020_19	UniRef90	UniRef90_A0A2A7AMC5	ParB domain-containing protein	NA
UHGV-0116020_19	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-0116020_19	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0116020_19	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0116020_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0116020_20	UniRef90	UniRef90_A0A2V2FTX8	Sigma70_r4 domain-containing protein	NA
UHGV-0116020_20	eggNOG-mapper	411471.SUBVAR_05843	NA	NA
UHGV-0116020_20	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0116020_22	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0116020_22	UniRef90	UniRef90_UPI00156E0A7C	HNH endonuclease	NA
UHGV-0116020_22	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-0116020_23	UniRef90	UniRef90_R6GFM0	Conserved domain protein	NA
UHGV-0116020_23	Structural annotation	PF19962	NA	NA
UHGV-0116020_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0116020_24	UniRef90	UniRef90_UPI001F1A3C47	terminase large subunit	NA
UHGV-0116020_24	eggNOG-mapper	748224.HMPREF9436_01467	phage terminase, large subunit	NA
UHGV-0116020_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0116020_24	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0116020_25	PHROG	phrog_104	portal protein	head and packaging
UHGV-0116020_25	UniRef90	UniRef90_A0A6N8H2B6	Phage portal protein	NA
UHGV-0116020_25	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0116020_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0116020_26	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0116020_26	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-0116020_26	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0116020_26	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0116020_26	Structural annotation	PF20344	NA	NA
UHGV-0116020_28	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0116020_28	UniRef90	UniRef90_D4K444	Phage minor structural protein GP20	NA
UHGV-0116020_28	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-0116020_28	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0116020_29	PHROG	phrog_267	major head protein	head and packaging
UHGV-0116020_29	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0116020_29	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-0116020_29	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0116020_30	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0116020_30	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0116020_30	eggNOG-mapper	762211.BSTEL_0628	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0116020_30	Structural annotation	PF09355	NA	NA
UHGV-0116020_31	PHROG	phrog_501	head closure Hc1	connector
UHGV-0116020_31	UniRef90	UniRef90_R6CEU4	NA	NA
UHGV-0116020_31	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-0116020_31	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0116020_32	PHROG	phrog_387	neck protein	connector
UHGV-0116020_32	UniRef90	UniRef90_A0A380KNT4	NA	NA
UHGV-0116020_32	eggNOG-mapper	936375.HMPREF1152_0683	NA	NA
UHGV-0116020_33	PHROG	phrog_123	tail terminator	connector
UHGV-0116020_33	UniRef90	UniRef90_A0A0E4CTM5	NA	NA
UHGV-0116020_33	eggNOG-mapper	1280698.AUJS01000007_gene1043	NA	NA
UHGV-0116020_33	Structural annotation	PF06141	NA	NA
UHGV-0116020_34	PHROG	phrog_117	major tail protein	tail
UHGV-0116020_34	UniRef90	UniRef90_A0A6N8H024	Phage tail protein	NA
UHGV-0116020_34	eggNOG-mapper	875454.BAEW01000017_gene1590	domain, Protein	NA
UHGV-0116020_34	COG	COG5492	NA	NA
UHGV-0116020_34	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0116020_35	PHROG	phrog_1526	NA	unknown function
UHGV-0116020_35	eggNOG-mapper	936375.HMPREF1152_0686	NA	NA
UHGV-0116020_36	PHROG	phrog_1633	NA	unknown function
UHGV-0116020_36	UniRef90	UniRef90_UPI000F7A0C2F	NA	NA
UHGV-0116020_36	eggNOG-mapper	1214184.ALKY01000039_gene910	NA	NA
UHGV-0116020_36	Pfam	PF17318	NA	DUF5361
UHGV-0116020_36	Structural annotation	PF17318	NA	NA
UHGV-0116020_37	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0116020_37	UniRef90	UniRef90_A0A6N8H0F9	Phage tail tape measure protein	NA
UHGV-0116020_37	eggNOG-mapper	748224.HMPREF9436_03326	Phage tail tape measure protein, TP901 family	NA
UHGV-0116020_37	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0116020_37	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0116020_37	COG	COG5283	Phage-related tail protein	NA
UHGV-0116020_37	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0116020_38	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0116020_38	UniRef90	UniRef90_UPI0011065E28	phage tail family protein	NA
UHGV-0116020_38	eggNOG-mapper	411471.SUBVAR_06982	Phage tail protein	NA
UHGV-0116020_38	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0116020_39	PHROG	phrog_538	minor tail protein	tail
UHGV-0116020_39	UniRef90	UniRef90_A0A1M7SME9	Virus ReqiPepy6 Gp37-like protein	NA
UHGV-0116020_39	eggNOG-mapper	1410670.JHXF01000015_gene2304	NA	NA
UHGV-0116020_39	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0116020_39	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0116020_40	PHROG	phrog_9534	head protein	head and packaging
UHGV-0116020_40	eggNOG-mapper	665956.HMPREF1032_02939	COG NOG18825 non supervised orthologous group	NA
UHGV-0116020_40	Structural annotation	PF20747	NA	NA