UHGV-0116112

Genome information

vOTU vOTU-020778

Genome length 15,491 bps

CDS count 24

Completeness 70.18% (medium-quality)

geNomad score 0.9777

Prediction confidence Confident

Genome information
Genome ID	UHGV-0116112
vOTU ID	vOTU-020778
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_279217
BioSample	SAMEA3888919
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.18% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9777
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.39
Jumbo phage	No

Genome content
Genome length	15,491 bps
GC content	45.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	24
CDS density	90.16%
Average CDS length	582.75 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0116112_7	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0116112_7	UniRef90	UniRef90_A0A3G3LYS5	Lower collar protein	NA
UHGV-0116112_7	eggNOG-mapper	10756.TUB11_BPPH2	NA	NA
UHGV-0116112_8	PHROG	phrog_2038	upper collar connector	connector
UHGV-0116112_8	UniRef90	UniRef90_R5FZI8	Connector protein	NA
UHGV-0116112_8	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0116112_8	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0116112_8	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0116112_9	PHROG	phrog_2248	tail protein	tail
UHGV-0116112_9	UniRef90	UniRef90_A0A843GZQ7	Caud_tail_N domain-containing protein	NA
UHGV-0116112_9	eggNOG-mapper	12345.Q9FZW6_BPGA1	NA	NA
UHGV-0116112_9	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0116112_9	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0116112_9	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0116112_10	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0116112_10	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-0116112_10	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-0116112_10	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0116112_13	PHROG	phrog_2150	terminase	head and packaging
UHGV-0116112_13	UniRef90	UniRef90_A0A355RJE0	DNA encapsidation protein	NA
UHGV-0116112_13	eggNOG-mapper	10756.PKG16_BPPH2	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0116112_13	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0116112_13	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0116112_14	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0116112_14	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0116112_14	UniRef90	UniRef90_A0A1W7M4V8	DNA-directed DNA polymerase	NA
UHGV-0116112_14	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0116112_14	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0116112_14	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0116112_16	KOfam	K07273	acm; lysozyme	NA
UHGV-0116112_16	PHROG	phrog_291	endolysin	lysis
UHGV-0116112_16	UniRef90	UniRef90_A0A318EI28	GH25 family lysozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0116112_16	eggNOG-mapper	877420.ATVW01000004_gene383	Glycosyl hydrolases family 25	NA
UHGV-0116112_16	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0116112_16	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0116112_16	Structural annotation	PF01183, MF_02227, NF002576, COG3757	NA	NA
UHGV-0116112_17	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0116112_17	UniRef90	UniRef90_J9GJ47	SsDNA binding protein (Fragment)	NA
UHGV-0116112_17	eggNOG-mapper	307240.Q5ILD0_9VIRU	Pfam:Phi29_Phage_SSB	NA
UHGV-0116112_17	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0116112_17	Structural annotation	PF17427	NA	NA
UHGV-0116112_18	Structural annotation	PF17548	NA	NA
UHGV-0116112_19	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0116112_19	UniRef90	UniRef90_A0A516LQR9	Putative DNA (Cytosine-5)-methyltransferase	NA
UHGV-0116112_19	eggNOG-mapper	1327982.R9ZYM1_9CAUD	NA	NA
UHGV-0116112_19	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA