UHGV-0116130

Genome information

vOTU vOTU-020730

Genome length 22,499 bps

CDS count 31

Completeness 55.17% (medium-quality)

geNomad score 0.9824

Prediction confidence Confident

Genome information
Genome ID	UHGV-0116130
vOTU ID	vOTU-020730
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_293039
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.17% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9824
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.79
Jumbo phage	No

Genome content
Genome length	22,499 bps
GC content	49.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	90.49%
Average CDS length	660.58 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0116130_1	PHROG	phrog_38078	NA	unknown function
UHGV-0116130_1	UniRef90	UniRef90_E7GTP4	Lysozyme	NA
UHGV-0116130_1	eggNOG-mapper	742740.HMPREF9474_04289	Peptidoglycan-binding domain 1 protein	NA
UHGV-0116130_1	Pfam	PF05257	CHAP domain	CHAP
UHGV-0116130_1	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0116130_1	Structural annotation	PF00877, PF19127, TIGR02594, TIGR04035, COG3738	NA	NA
UHGV-0116130_2	PHROG	phrog_1129	holin	lysis
UHGV-0116130_2	UniRef90	UniRef90_A0A2N0KEV2	Enolase	NA
UHGV-0116130_2	eggNOG-mapper	742740.HMPREF9474_03522	NA	NA
UHGV-0116130_2	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0116130_2	Structural annotation	PF06946	NA	NA
UHGV-0116130_3	PHROG	phrog_1009	NA	unknown function
UHGV-0116130_3	UniRef90	UniRef90_A0A3E2WI44	Branched-chain amino acid ABC transporter permease	NA
UHGV-0116130_3	eggNOG-mapper	742740.HMPREF9474_03521	NA	NA
UHGV-0116130_6	PHROG	phrog_19111	NA	unknown function
UHGV-0116130_6	eggNOG-mapper	742740.HMPREF9474_03519	ATPase involved in DNA repair	NA
UHGV-0116130_6	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0116130_6	Structural annotation	PF16351	NA	NA
UHGV-0116130_7	eggNOG-mapper	742740.HMPREF9474_03518	NA	NA
UHGV-0116130_8	PHROG	phrog_18725	NA	unknown function
UHGV-0116130_8	eggNOG-mapper	742740.HMPREF9474_03517	NA	NA
UHGV-0116130_9	PHROG	phrog_13879	NA	unknown function
UHGV-0116130_9	eggNOG-mapper	742740.HMPREF9474_03516	NA	NA
UHGV-0116130_9	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0116130_10	PHROG	phrog_1194	NA	unknown function
UHGV-0116130_10	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-0116130_10	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0116130_11	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0116130_11	UniRef90	UniRef90_A0A174WQ97	Phage-like protein	NA
UHGV-0116130_11	eggNOG-mapper	742740.HMPREF9474_03514	tape measure	NA
UHGV-0116130_11	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0116130_11	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0116130_12	PHROG	phrog_8355	NA	unknown function
UHGV-0116130_12	UniRef90	UniRef90_UPI001D07612A	bacteriophage Gp15 family protein	NA
UHGV-0116130_12	eggNOG-mapper	742740.HMPREF9474_03513	NA	NA
UHGV-0116130_12	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0116130_12	Structural annotation	PF06854	NA	NA
UHGV-0116130_13	PHROG	phrog_8300	NA	unknown function
UHGV-0116130_13	eggNOG-mapper	742740.HMPREF9474_03512	NA	NA
UHGV-0116130_13	Structural annotation	PF06854	NA	NA
UHGV-0116130_14	PHROG	phrog_820	major tail protein	tail
UHGV-0116130_14	eggNOG-mapper	742740.HMPREF9474_03511	domain, Protein	NA
UHGV-0116130_14	COG	COG5492	NA	NA
UHGV-0116130_14	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0116130_15	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0116130_15	UniRef90	UniRef90_UPI001D068DAC	minor capsid protein	NA
UHGV-0116130_15	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-0116130_15	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0116130_15	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0116130_16	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0116130_16	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0116130_17	PHROG	phrog_8710	NA	unknown function
UHGV-0116130_17	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0116130_17	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0116130_18	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0116130_18	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-0116130_19	PHROG	phrog_1378	NA	unknown function
UHGV-0116130_19	eggNOG-mapper	742740.HMPREF9474_03506	NA	NA
UHGV-0116130_20	PHROG	phrog_422	major head protein	head and packaging
UHGV-0116130_20	UniRef90	UniRef90_E7GRG0	Phage major capsid protein	NA
UHGV-0116130_20	eggNOG-mapper	742740.HMPREF9474_03505	NA	NA
UHGV-0116130_20	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0116130_21	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0116130_21	eggNOG-mapper	742740.HMPREF9474_03504	NA	NA
UHGV-0116130_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0116130_22	UniRef90	UniRef90_UPI00138AC1F0	minor capsid protein	NA
UHGV-0116130_22	eggNOG-mapper	742740.HMPREF9474_03503	Phage minor capsid protein 2	NA
UHGV-0116130_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0116130_22	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-0116130_22	COG	COG2369	NA	NA
UHGV-0116130_22	Structural annotation	PF06152	NA	NA
UHGV-0116130_23	PHROG	phrog_25639	NA	unknown function
UHGV-0116130_23	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0116130_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-0116130_24	UniRef90	UniRef90_E7GRF6	Phage minor capsid protein	NA
UHGV-0116130_24	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0116130_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0116130_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0116130_26	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0116130_26	UniRef90	UniRef90_UPI00192D4B43	terminase	NA
UHGV-0116130_26	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-0116130_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0116130_26	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0116130_27	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0116130_27	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0116130_27	UniRef90	UniRef90_E7GRF4	Terminase small subunit	NA
UHGV-0116130_27	eggNOG-mapper	742740.HMPREF9474_03499	Terminase Small Subunit	NA
UHGV-0116130_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0116130_27	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0116130_27	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0116130_28	eggNOG-mapper	742740.HMPREF9474_03498	NA	NA
UHGV-0116130_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0116130_29	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-0116130_29	eggNOG-mapper	33035.JPJF01000139_gene3002	NA	NA
UHGV-0116130_29	Structural annotation	PF04545	NA	NA
UHGV-0116130_30	AcrCatalog	cluster_47354	NA	NA