UHGV-0116166

Genome information

Genome length 23,790 bps

CDS count 31

Completeness 71.48% (medium-quality)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-0116166
vOTU ID	vOTU-035427
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_292089
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.48% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.78
Jumbo phage	No

Genome content
Genome length	23,790 bps
GC content	43.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	93.94%
Average CDS length	724.65 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0116166_3	PHROG	phrog_38707	NA	unknown function
UHGV-0116166_3	UniRef90	UniRef90_UPI00082EFB7A	tail fiber protein	NA
UHGV-0116166_3	eggNOG-mapper	33035.JPJF01000033_gene2261	tail collar domain protein	NA
UHGV-0116166_3	COG	COG4675	Phage tail collar domain	NA
UHGV-0116166_4	PHROG	phrog_538	minor tail protein	tail
UHGV-0116166_4	UniRef90	UniRef90_UPI0008305645	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0116166_4	eggNOG-mapper	33035.JPJF01000033_gene2262	NA	NA
UHGV-0116166_4	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0116166_4	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0116166_5	PHROG	phrog_9534	head protein	head and packaging
UHGV-0116166_5	eggNOG-mapper	1499683.CCFF01000017_gene2563	COG NOG18825 non supervised orthologous group	NA
UHGV-0116166_5	Structural annotation	PF21567	NA	NA
UHGV-0116166_6	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0116166_6	UniRef90	UniRef90_R5RA69	Phage-related protein	NA
UHGV-0116166_6	eggNOG-mapper	33035.JPJF01000033_gene2264	PFAM Phage tail protein	NA
UHGV-0116166_6	COG	COG4722	Phage-related protein YomH	NA
UHGV-0116166_6	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0116166_7	KOfam	K10402	KIF20; kinesin family member 20	NA
UHGV-0116166_7	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0116166_7	UniRef90	UniRef90_R5R521	PhageMin_Tail domain-containing protein	NA
UHGV-0116166_7	eggNOG-mapper	742723.HMPREF9477_00897	phage tail tape measure protein	NA
UHGV-0116166_7	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0116166_7	COG	COG4487	NA	NA
UHGV-0116166_7	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0116166_8	PHROG	phrog_706	NA	unknown function
UHGV-0116166_8	UniRef90	UniRef90_R5RS25	Bacteriophage Gp15 protein	NA
UHGV-0116166_8	eggNOG-mapper	411461.DORFOR_01174	Bacteriophage Gp15 protein	NA
UHGV-0116166_8	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0116166_8	Structural annotation	PF06854	NA	NA
UHGV-0116166_9	PHROG	phrog_4450	NA	unknown function
UHGV-0116166_9	UniRef90	UniRef90_A0A7X3SKC0	AP endonuclease	NA
UHGV-0116166_9	Pfam	PF20378	NA	DUF6673
UHGV-0116166_9	Structural annotation	PF20378	NA	NA
UHGV-0116166_10	PHROG	phrog_820	major tail protein	tail
UHGV-0116166_10	UniRef90	UniRef90_A0A412UWV6	S-l_SbsC_C domain-containing protein	NA
UHGV-0116166_10	eggNOG-mapper	411461.DORFOR_01172	NA	NA
UHGV-0116166_10	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0116166_11	Structural annotation	PF12691	NA	NA
UHGV-0116166_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0116166_12	UniRef90	UniRef90_R5RS12	Putative minor capsid protein	NA
UHGV-0116166_12	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0116166_13	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0116166_13	UniRef90	UniRef90_UPI001DCE9966	minor capsid protein	NA
UHGV-0116166_13	eggNOG-mapper	1161901.I1TLE5_9CAUD	Minor capsid protein	NA
UHGV-0116166_13	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0116166_13	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0116166_14	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0116166_14	UniRef90	UniRef90_R5RS10	Protein gp8	NA
UHGV-0116166_14	eggNOG-mapper	997296.PB1_16199	NA	NA
UHGV-0116166_15	PHROG	phrog_212	major head protein	head and packaging
UHGV-0116166_15	UniRef90	UniRef90_UPI000C7D9661	phage capsid protein	NA
UHGV-0116166_15	eggNOG-mapper	1151292.QEW_2433	NA	NA
UHGV-0116166_15	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0116166_16	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0116166_16	eggNOG-mapper	1391647.AVSV01000003_gene1807	NA	NA
UHGV-0116166_17	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0116166_17	UniRef90	UniRef90_UPI001D08F33D	NA	NA
UHGV-0116166_17	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0116166_17	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0116166_18	PHROG	phrog_34144	NA	unknown function
UHGV-0116166_18	eggNOG-mapper	936596.HMPREF1495_0343	NA	NA
UHGV-0116166_18	Structural annotation	PF20111	NA	NA
UHGV-0116166_19	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0116166_19	UniRef90	UniRef90_R5RS02	Phage minor capsid protein 2	NA
UHGV-0116166_19	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0116166_19	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0116166_19	COG	COG2369	NA	NA
UHGV-0116166_19	Structural annotation	PF06152	NA	NA
UHGV-0116166_20	PHROG	phrog_533	portal protein	head and packaging
UHGV-0116166_20	UniRef90	UniRef90_R5RLJ0	Putative portal protein	NA
UHGV-0116166_20	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-0116166_20	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0116166_20	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0116166_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0116166_21	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0116166_21	UniRef90	UniRef90_R5R3C8	Phage terminase large subunit PBSX family	NA
UHGV-0116166_21	eggNOG-mapper	592031.GCWU000322_00074	Phage terminase large subunit	NA
UHGV-0116166_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0116166_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0116166_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0116166_21	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0116166_22	PHROG	phrog_2412	NA	unknown function
UHGV-0116166_22	UniRef90	UniRef90_A0A4V1EFZ3	NA	NA
UHGV-0116166_22	eggNOG-mapper	742765.HMPREF9457_02118	NA	NA
UHGV-0116166_24	PHROG	phrog_11237	NA	unknown function
UHGV-0116166_24	eggNOG-mapper	610130.Closa_0738	NA	NA
UHGV-0116166_26	eggNOG-mapper	537007.BLAHAN_05459	NA	NA
UHGV-0116166_27	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0116166_27	Structural annotation	PF12643, NF002747, COG0140	NA	NA
UHGV-0116166_28	PHROG	phrog_5051	NA	unknown function
UHGV-0116166_29	UniRef90	UniRef90_UPI001C0CED42	toxin PIN	NA
UHGV-0116166_29	eggNOG-mapper	411470.RUMGNA_02044	NA	NA
UHGV-0116166_29	Structural annotation	PF02185	NA	NA