UHGV-0116319

Genome information

Genome length 37,530 bps

CDS count 50

Completeness 72.02% (medium-quality)

geNomad score 0.9308

Prediction confidence Confident

Genome information
Genome ID	UHGV-0116319
vOTU ID	vOTU-008763
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_291371
BioSample	SAMEA4378269
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.02% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9308
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.26
Jumbo phage	No

Genome content
Genome length	37,530 bps
GC content	29.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	86.73%
Average CDS length	652.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0116319_1	PHROG	phrog_30973	NA	unknown function
UHGV-0116319_1	eggNOG-mapper	1232428.CAVO010000067_gene414	Type III restriction enzyme, res subunit	NA
UHGV-0116319_1	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0116319_1	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0116319_3	UniRef90	UniRef90_A0A1G6NNF8	Intein N-terminal splicing region	NA
UHGV-0116319_3	eggNOG-mapper	1232428.CAVO010000067_gene416	NA	NA
UHGV-0116319_4	Structural annotation	PF00765, MF_02210, NF007644, COG2153	NA	NA
UHGV-0116319_7	PHROG	phrog_28766	tail fiber protein	tail
UHGV-0116319_8	KOfam	K07273	acm; lysozyme	NA
UHGV-0116319_8	PHROG	phrog_291	endolysin	lysis
UHGV-0116319_8	UniRef90	UniRef90_UPI00142FE002	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0116319_8	eggNOG-mapper	1122216.AUHW01000006_gene367	Glycosyl hydrolase family 25	NA
UHGV-0116319_8	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0116319_8	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0116319_8	Structural annotation	PF01183, NF008377, COG3757	NA	NA
UHGV-0116319_9	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0116319_10	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0116319_10	UniRef90	UniRef90_A0A0X8KM44	Conjugal transfer protein	NA
UHGV-0116319_10	eggNOG-mapper	1231377.C426_1976	DNA restriction-modification system	NA
UHGV-0116319_10	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-0116319_10	Structural annotation	PF19587, MF_01872, NF011489, COG0286	NA	NA
UHGV-0116319_11	PHROG	phrog_9467	NA	unknown function
UHGV-0116319_11	UniRef90	UniRef90_UPI0008A6C497	Gp49 family protein	NA
UHGV-0116319_11	eggNOG-mapper	1415774.U728_831	Phage protein (N4 Gp49/phage Sf6 gene 66) family	NA
UHGV-0116319_11	Pfam	PF13876	NA	Phage_gp49_66
UHGV-0116319_11	dbAPIS	APIS043	NA	NA
UHGV-0116319_11	Structural annotation	PF13876	NA	NA
UHGV-0116319_12	PHROG	phrog_199	holin	lysis
UHGV-0116319_12	UniRef90	UniRef90_H3K5K9	Toxin secretion/phage lysis holin	NA
UHGV-0116319_12	eggNOG-mapper	927704.SELR_16600	Bacteriophage holin family	NA
UHGV-0116319_12	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0116319_12	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0116319_12	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0116319_12	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0116319_13	Structural annotation	PF13084	NA	NA
UHGV-0116319_15	eggNOG-mapper	1123250.KB908441_gene1623	NA	NA
UHGV-0116319_21	eggNOG-mapper	1401067.HMPREF0872_03755	NA	NA
UHGV-0116319_21	Structural annotation	PF11134, MF_00923, NF000022, COG4257	NA	NA
UHGV-0116319_22	Structural annotation	PF20387	NA	NA
UHGV-0116319_23	PHROG	phrog_334	major head protein	head and packaging
UHGV-0116319_23	UniRef90	UniRef90_UPI000E4DE9BD	N4-gp56 family major capsid protein	NA
UHGV-0116319_23	eggNOG-mapper	1009370.ALO_12356	NA	NA
UHGV-0116319_23	Pfam	PF13252	NA	DUF4043
UHGV-0116319_23	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0116319_27	PHROG	phrog_156	portal protein	head and packaging
UHGV-0116319_27	UniRef90	UniRef90_F7NK66	Putative phage portal protein	NA
UHGV-0116319_27	eggNOG-mapper	1009370.ALO_12396	Tfp pilus assembly protein FimV	NA
UHGV-0116319_27	COG	COG3170	Type IV pilus assembly protein FimV	NA
UHGV-0116319_27	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0116319_28	KOfam	K07584	NA	NA
UHGV-0116319_28	PHROG	phrog_4478	peptidase	other
UHGV-0116319_28	UniRef90	UniRef90_UPI001C7040D4	ribosomal-processing cysteine protease Prp	NA
UHGV-0116319_28	eggNOG-mapper	555079.Toce_0764	Cysteine protease Prp	NA
UHGV-0116319_28	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0116319_28	COG	COG2868	NA	NA
UHGV-0116319_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0116319_29	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0116319_29	UniRef90	UniRef90_UPI000E4D52EE	PBSX family phage terminase large subunit	NA
UHGV-0116319_29	eggNOG-mapper	1009370.ALO_12436	Phage terminase, large subunit	NA
UHGV-0116319_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0116319_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0116319_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0116319_29	Structural annotation	PF04466, PF20454, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0116319_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0116319_30	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0116319_30	UniRef90	UniRef90_UPI000E51447B	terminase small subunit	NA
UHGV-0116319_30	eggNOG-mapper	1122947.FR7_2522	Terminase small subunit	NA
UHGV-0116319_30	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0116319_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0116319_30	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0116319_30	Structural annotation	PF03592, PF06056, NF040601, COG3728	NA	NA
UHGV-0116319_31	eggNOG-mapper	401526.TcarDRAFT_1279	phage transcriptional regulator, RinA family	NA
UHGV-0116319_36	KOfam	K03700	recU; recombination protein U	NA
UHGV-0116319_36	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0116319_36	UniRef90	UniRef90_UPI0015F88340	Holliday junction resolvase RecU	NA
UHGV-0116319_36	eggNOG-mapper	1151292.QEW_0324	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0116319_36	Pfam	PF03838	Recombination protein U	RecU
UHGV-0116319_36	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0116319_36	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0116319_37	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0116319_37	eggNOG-mapper	642492.Clole_0725	NA	NA
UHGV-0116319_37	Structural annotation	PF11726	NA	NA
UHGV-0116319_38	KOfam	K22222	cetZ; tubulin-like protein CetZ	NA
UHGV-0116319_38	PHROG	phrog_17961	NA	unknown function
UHGV-0116319_38	UniRef90	UniRef90_A0A7X5I836	Tubulin domain-containing protein	NA
UHGV-0116319_38	eggNOG-mapper	1235793.C809_02636	PFAM Tubulin FtsZ	NA
UHGV-0116319_38	Pfam	PF00091	Tubulin/FtsZ family, GTPase domain	Tubulin
UHGV-0116319_38	COG	COG0206	Cell division GTPase FtsZ	NA
UHGV-0116319_38	Structural annotation	PF00091, PF21011, MF_01946, TIGR00065, COG0206	NA	NA
UHGV-0116319_39	UniRef90	UniRef90_UPI000E4D2843	helix-turn-helix transcriptional regulator	NA
UHGV-0116319_39	eggNOG-mapper	1304866.K413DRAFT_2961	NA	NA
UHGV-0116319_39	Structural annotation	PF13463, MF_01819, NF008565, COG1846	NA	NA
UHGV-0116319_40	UniRef90	UniRef90_UPI000E5438E8	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0116319_40	Pfam	PF01476	LysM domain	LysM
UHGV-0116319_40	COG	COG1388	LysM repeat	NA
UHGV-0116319_40	Structural annotation	PF01476, MF_02014, NF010723, COG1388	NA	NA
UHGV-0116319_41	UniRef90	UniRef90_UPI0015F98702	helix-turn-helix domain-containing protein	NA
UHGV-0116319_41	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0116319_42	UniRef90	UniRef90_UPI000E4873B3	helix-turn-helix domain-containing protein	NA
UHGV-0116319_42	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0116319_42	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0116319_43	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0116319_43	UniRef90	UniRef90_UPI001C7076D9	helix-turn-helix domain-containing protein	NA
UHGV-0116319_43	eggNOG-mapper	1132442.KB889752_gene869	Helix-turn-helix XRE-family like proteins	NA
UHGV-0116319_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0116319_43	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0116319_44	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0116319_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0116319_44	UniRef90	UniRef90_UPI000E47904F	helix-turn-helix transcriptional regulator	NA
UHGV-0116319_44	eggNOG-mapper	1415774.U728_3780	helix-turn-helix	NA
UHGV-0116319_44	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0116319_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0116319_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0116319_44	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0116319_49	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0116319_49	UniRef90	UniRef90_UPI0018C7AF31	NA	NA
UHGV-0116319_49	eggNOG-mapper	706434.HMPREF9429_00177	NA	NA
UHGV-0116319_49	Structural annotation	PF06573	NA	NA