UHGV-0116395

Genome information

Genome length 38,251 bps

CDS count 44

Completeness 92.44% (high-quality)

geNomad score 0.9819

Prediction confidence Confident

Genome information
Genome ID	UHGV-0116395
vOTU ID	vOTU-062328
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_294589
BioSample	SAMEA4431951
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.44% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9819
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	9.65
Jumbo phage	No

Genome content
Genome length	38,251 bps
GC content	59.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	93.96%
Average CDS length	820.16 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0116395_1	KOfam	K00286	proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]	NA
UHGV-0116395_1	UniRef90	UniRef90_A0A3D1VFF0	Pyrroline-5-carboxylate reductase	NA
UHGV-0116395_1	eggNOG-mapper	657322.FPR_29500	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline	NA
UHGV-0116395_1	Pfam	PF03807	NADP oxidoreductase coenzyme F420-dependent	F420_oxidored
UHGV-0116395_1	Pfam	PF14748	Pyrroline-5-carboxylate reductase dimerisation	P5CR_dimer
UHGV-0116395_1	NCBIFam	TIGR00112.1	pyrroline-5-carboxylate reductase	NA
UHGV-0116395_1	COG	COG0345	Pyrroline-5-carboxylate reductase	NA
UHGV-0116395_1	HAMAP	MF_01925	Pyrroline-5-carboxylate reductase [proC]	NA
UHGV-0116395_3	KOfam	K14059	int; integrase	NA
UHGV-0116395_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0116395_3	UniRef90	UniRef90_A0A810Q0Y2	Tyr recombinase domain-containing protein	NA
UHGV-0116395_3	eggNOG-mapper	693746.OBV_43340	Belongs to the 'phage' integrase family	NA
UHGV-0116395_3	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0116395_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0116395_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0116395_3	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0116395_4	PHROG	phrog_4785	NA	unknown function
UHGV-0116395_5	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0116395_5	UniRef90	UniRef90_R5AVU4	CI-like repressor	NA
UHGV-0116395_5	eggNOG-mapper	608538.HTH_1322	PBP superfamily domain	NA
UHGV-0116395_5	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0116395_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0116395_5	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0116395_7	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0116395_7	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0116395_7	UniRef90	UniRef90_A0A174LY22	Antitoxin PezA	NA
UHGV-0116395_7	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0116395_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0116395_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0116395_7	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0116395_9	eggNOG-mapper	1131462.DCF50_p2449	Bacterial Ig-like domain 2	NA
UHGV-0116395_9	NCBIFam	NF033223.2	YHYH domain-containing protein	NA
UHGV-0116395_9	COG	COG5492	NA	NA
UHGV-0116395_11	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-0116395_11	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0116395_13	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0116395_13	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0116395_13	UniRef90	UniRef90_A0A316NA61	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0116395_13	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0116395_13	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0116395_13	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0116395_13	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0116395_13	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0116395_13	Structural annotation	PF00145, TIGR00675	NA	NA
UHGV-0116395_15	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0116395_15	UniRef90	UniRef90_A0A1Y4L975	YqaJ domain-containing protein	NA
UHGV-0116395_15	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-0116395_15	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0116395_15	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0116395_15	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0116395_15	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0116395_16	Structural annotation	PF12844, MF_00535, NF041951, COG5499	NA	NA
UHGV-0116395_17	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0116395_17	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0116395_17	UniRef90	UniRef90_A0A7X7Z0P1	Recombinase RecT	NA
UHGV-0116395_17	eggNOG-mapper	272626.lin0085	Recombinational DNA repair protein (RecE pathway)	NA
UHGV-0116395_17	Pfam	PF03837	RecT family	RecT
UHGV-0116395_17	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0116395_17	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0116395_17	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0116395_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0116395_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0116395_18	UniRef90	UniRef90_A0A1Y4M5T6	Single-stranded DNA-binding protein	NA
UHGV-0116395_18	eggNOG-mapper	693746.OBV_12860	Single-strand binding protein family	NA
UHGV-0116395_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0116395_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0116395_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0116395_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0116395_18	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0116395_19	PHROG	phrog_9474	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0116395_19	UniRef90	UniRef90_A0A523BZ55	HNH endonuclease	NA
UHGV-0116395_19	eggNOG-mapper	644966.Tmar_0029	HNH endonuclease	NA
UHGV-0116395_19	Pfam	PF14279	HNH endonuclease	HNH_5
UHGV-0116395_19	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0116395_22	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0116395_22	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0116395_22	UniRef90	UniRef90_R9MCP5	DNA adenine methylase	NA
UHGV-0116395_22	eggNOG-mapper	1235799.C818_02654	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0116395_22	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0116395_22	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0116395_22	COG	COG0338	DNA-adenine methylase	NA
UHGV-0116395_22	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0116395_23	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0116395_24	PHROG	phrog_3136	NA	unknown function
UHGV-0116395_24	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0116395_24	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0116395_24	Pfam	PF04266	ASCH domain	ASCH
UHGV-0116395_24	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0116395_24	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0116395_25	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0116395_25	UniRef90	UniRef90_A0A417HX51	HNH endonuclease	NA
UHGV-0116395_25	eggNOG-mapper	742740.HMPREF9474_03129	HNH endonuclease	NA
UHGV-0116395_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0116395_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0116395_25	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0116395_26	Structural annotation	PF06657	NA	NA
UHGV-0116395_28	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0116395_28	eggNOG-mapper	665956.HMPREF1032_03086	COG NOG12663 non supervised orthologous group	NA
UHGV-0116395_28	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-0116395_30	PHROG	phrog_474	phosphofructokinase	other
UHGV-0116395_30	UniRef90	UniRef90_A0A7V6W4J9	NA	NA
UHGV-0116395_30	eggNOG-mapper	665956.HMPREF1032_00639	NA	NA
UHGV-0116395_30	Pfam	PF19905	NA	DUF6378
UHGV-0116395_30	Structural annotation	PF19905	NA	NA
UHGV-0116395_31	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0116395_31	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0116395_31	UniRef90	UniRef90_A0A174WGH7	Holliday junction resolvase	NA
UHGV-0116395_31	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0116395_31	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0116395_31	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0116395_32	PHROG	phrog_1206	terminase small subunit	head and packaging
UHGV-0116395_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0116395_33	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0116395_33	UniRef90	UniRef90_A0A810Q5R0	Phage terminase large subunit	NA
UHGV-0116395_33	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0116395_33	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0116395_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-0116395_33	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0116395_34	PHROG	phrog_156	portal protein	head and packaging
UHGV-0116395_34	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0116395_34	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0116395_35	KOfam	K07584	NA	NA
UHGV-0116395_35	PHROG	phrog_4478	peptidase	other
UHGV-0116395_35	UniRef90	UniRef90_UPI001A8F44BB	ribosomal-processing cysteine protease Prp	NA
UHGV-0116395_35	eggNOG-mapper	521098.Aaci_1816	Cysteine protease Prp	NA
UHGV-0116395_35	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0116395_35	COG	COG2868	NA	NA
UHGV-0116395_35	Structural annotation	PF04327, NF011133, COG2868	NA	NA
UHGV-0116395_36	PHROG	phrog_13908	NA	unknown function
UHGV-0116395_36	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0116395_37	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0116395_37	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-0116395_37	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-0116395_37	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0116395_37	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0116395_38	PHROG	phrog_15239	NA	unknown function
UHGV-0116395_39	PHROG	phrog_12105	NA	unknown function
UHGV-0116395_39	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-0116395_40	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0116395_40	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0116395_40	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0116395_42	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0116395_43	PHROG	phrog_22978	NA	unknown function
UHGV-0116395_43	UniRef90	UniRef90_A0A348SZV7	MuF_C domain-containing protein (Fragment)	NA
UHGV-0116395_43	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA