UHGV-0116536

Genome information

Genome length 36,008 bps

CDS count 58

Completeness 88.14% (medium-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-0116536
vOTU ID	vOTU-025150
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_294187
BioSample	SAMEA4431908
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.14% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.24
Jumbo phage	No

Genome content
Genome length	36,008 bps
GC content	52.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	85.84%
Average CDS length	537.88 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0116536_2	PHROG	phrog_22773	NA	unknown function
UHGV-0116536_2	eggNOG-mapper	742738.HMPREF9460_03965	NA	NA
UHGV-0116536_4	PHROG	phrog_11157	NA	unknown function
UHGV-0116536_4	UniRef90	UniRef90_G9YSD2	Big_13 domain-containing protein	NA
UHGV-0116536_4	eggNOG-mapper	1235797.C816_02657	NA	NA
UHGV-0116536_4	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0116536_4	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0116536_4	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0116536_4	Structural annotation	PF09136, PF13750, MF_04116, NF032891, COG2372	NA	NA
UHGV-0116536_6	PHROG	phrog_13879	NA	unknown function
UHGV-0116536_6	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-0116536_6	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-0116536_7	eggNOG-mapper	1235797.C816_02660	NA	NA
UHGV-0116536_7	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0116536_8	PHROG	phrog_23464	NA	unknown function
UHGV-0116536_8	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0116536_8	COG	COG5283	Phage-related tail protein	NA
UHGV-0116536_8	Structural annotation	PF20155	NA	NA
UHGV-0116536_10	PHROG	phrog_18646	NA	unknown function
UHGV-0116536_11	PHROG	phrog_885	major tail protein	tail
UHGV-0116536_11	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0116536_11	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0116536_11	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0116536_12	Structural annotation	PF11367	NA	NA
UHGV-0116536_13	PHROG	phrog_1233	NA	unknown function
UHGV-0116536_13	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0116536_13	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0116536_14	PHROG	phrog_17977	NA	unknown function
UHGV-0116536_14	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0116536_14	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0116536_16	PHROG	phrog_544	major head protein	head and packaging
UHGV-0116536_16	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0116536_16	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0116536_16	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0116536_16	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0116536_17	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0116536_17	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0116536_17	Structural annotation	PF06810	NA	NA
UHGV-0116536_18	Pfam	PF08681	NA	DUF1778
UHGV-0116536_18	Structural annotation	PF03869, NF010256	NA	NA
UHGV-0116536_22	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0116536_22	UniRef90	UniRef90_UPI0018AA0B5A	HK97 gp10 family phage protein	NA
UHGV-0116536_22	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-0116536_22	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0116536_22	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0116536_22	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0116536_23	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0116536_23	UniRef90	UniRef90_UPI0018AAFC07	minor capsid protein	NA
UHGV-0116536_23	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0116536_23	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0116536_23	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0116536_23	COG	COG2369	NA	NA
UHGV-0116536_23	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0116536_25	PHROG	phrog_64	portal protein	head and packaging
UHGV-0116536_25	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0116536_25	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0116536_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0116536_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0116536_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0116536_26	PHROG	phrog_10250	NA	unknown function
UHGV-0116536_26	UniRef90	UniRef90_UPI0018A99FCF	PBSX family phage terminase large subunit	NA
UHGV-0116536_26	eggNOG-mapper	476272.RUMHYD_01756	NA	NA
UHGV-0116536_26	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0116536_26	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0116536_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0116536_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0116536_26	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0116536_27	UniRef90	UniRef90_UPI0018A8F249	helix-turn-helix domain containing protein	NA
UHGV-0116536_27	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0116536_27	Structural annotation	PF13542	NA	NA
UHGV-0116536_28	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0116536_28	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0116536_28	UniRef90	UniRef90_A0A1Y3ZK49	Phage repressor protein/antirepressor Ant	NA
UHGV-0116536_28	eggNOG-mapper	33035.JPJF01000057_gene3118	BRO family, N-terminal domain	NA
UHGV-0116536_28	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0116536_28	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0116536_28	COG	COG3617	Prophage antirepressor	NA
UHGV-0116536_28	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0116536_29	eggNOG-mapper	742738.HMPREF9460_02503	NA	NA
UHGV-0116536_29	Structural annotation	PF06530, MF_00674, TIGR01636, COG1342	NA	NA
UHGV-0116536_31	PHROG	phrog_824	NA	unknown function
UHGV-0116536_31	UniRef90	UniRef90_A0A096B719	VRR-NUC domain-containing protein	NA
UHGV-0116536_31	eggNOG-mapper	742738.HMPREF9460_02501	VRR_NUC	NA
UHGV-0116536_31	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0116536_31	Structural annotation	PF08774	NA	NA
UHGV-0116536_32	PHROG	phrog_3253	NA	unknown function
UHGV-0116536_32	UniRef90	UniRef90_UPI0011773349	resolvase	NA
UHGV-0116536_32	Structural annotation	PF18618	NA	NA
UHGV-0116536_33	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0116536_33	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0116536_33	UniRef90	UniRef90_UPI00164D082B	DEAD/DEAH box helicase	NA
UHGV-0116536_33	eggNOG-mapper	742738.HMPREF9460_02499	helicase superfamily c-terminal domain	NA
UHGV-0116536_33	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0116536_33	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0116536_33	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0116536_33	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0116536_33	Structural annotation	PF04851, PF16203, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0116536_34	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0116536_34	UniRef90	UniRef90_A0A173Y540	Superfamily II helicase and inactivated derivatives	NA
UHGV-0116536_34	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0116536_34	Pfam	PF06048	NA	DUF927
UHGV-0116536_34	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0116536_34	COG	COG5519	NA	NA
UHGV-0116536_34	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0116536_35	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0116536_35	PHROG	phrog_11992	NA	unknown function
UHGV-0116536_35	UniRef90	UniRef90_A0A096B603	ZnF_CHCC domain-containing protein	NA
UHGV-0116536_35	eggNOG-mapper	742738.HMPREF9460_02494	CHC2 zinc finger	NA
UHGV-0116536_35	PADLOC	drt-cluster192	DRT	DRT
UHGV-0116536_35	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0116536_35	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0116536_35	Structural annotation	PF01807	NA	NA
UHGV-0116536_38	Structural annotation	NF007621, COG1974	NA	NA
UHGV-0116536_41	UniRef90	UniRef90_A0A173Y4X9	DNA binding domain, excisionase family	NA
UHGV-0116536_41	eggNOG-mapper	83406.HDN1F_03990	Excisionase	NA
UHGV-0116536_41	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0116536_41	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0116536_41	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0116536_42	PHROG	phrog_1726	anti-repressor	transcription regulation
UHGV-0116536_42	UniRef90	UniRef90_UPI001EE00C30	ORF6N domain-containing protein	NA
UHGV-0116536_42	eggNOG-mapper	742738.HMPREF9460_02487	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0116536_42	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0116536_42	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0116536_43	UniRef90	UniRef90_UPI001A9C221A	helix-turn-helix domain-containing protein	NA
UHGV-0116536_43	eggNOG-mapper	573061.Clocel_2455	Helix-turn-helix	NA
UHGV-0116536_43	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0116536_43	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0116536_44	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0116536_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0116536_44	UniRef90	UniRef90_UPI001897CAD4	helix-turn-helix domain-containing protein	NA
UHGV-0116536_44	eggNOG-mapper	658659.HMPREF0983_03304	Helix-turn-helix XRE-family like proteins	NA
UHGV-0116536_44	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0116536_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0116536_45	PHROG	phrog_1726	anti-repressor	transcription regulation
UHGV-0116536_45	UniRef90	UniRef90_UPI001EDD8BF8	Rha family transcriptional regulator	NA
UHGV-0116536_45	eggNOG-mapper	742738.HMPREF9460_02487	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0116536_45	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0116536_45	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0116536_46	UniRef90	UniRef90_U2BKK8	HTH cro/C1-type domain-containing protein	NA
UHGV-0116536_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0116536_46	Structural annotation	PF13560, NF040507, COG1396	NA	NA
UHGV-0116536_47	UniRef90	UniRef90_UPI0018976583	helix-turn-helix domain-containing protein	NA
UHGV-0116536_47	eggNOG-mapper	1507.HMPREF0262_00424	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0116536_47	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0116536_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0116536_48	PHROG	phrog_87	metallo-protease	other
UHGV-0116536_48	UniRef90	UniRef90_UPI001899699D	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0116536_48	eggNOG-mapper	1007096.BAGW01000011_gene2354	IrrE N-terminal-like domain	NA
UHGV-0116536_48	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0116536_48	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0116536_49	PHROG	phrog_33872	NA	unknown function
UHGV-0116536_49	eggNOG-mapper	693746.OBV_19740	NA	NA
UHGV-0116536_50	KOfam	K14059	int; integrase	NA
UHGV-0116536_50	PHROG	phrog_1	integrase	integration and excision
UHGV-0116536_50	UniRef90	UniRef90_H1C924	Tyr recombinase domain-containing protein	NA
UHGV-0116536_50	eggNOG-mapper	742738.HMPREF9460_04031	Phage integrase family	NA
UHGV-0116536_50	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0116536_50	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0116536_50	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0116536_50	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0116536_53	PHROG	phrog_13890	NA	unknown function
UHGV-0116536_53	UniRef90	UniRef90_UPI0008F8D321	NA	NA
UHGV-0116536_53	eggNOG-mapper	742738.HMPREF9460_00716	NA	NA
UHGV-0116536_53	Structural annotation	PF10723, NF010256, COG4710	NA	NA
UHGV-0116536_54	PHROG	phrog_13890	NA	unknown function
UHGV-0116536_54	UniRef90	UniRef90_G9YS61	Toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain protein	NA
UHGV-0116536_54	Pfam	PF05534	HicB family	HicB
UHGV-0116536_54	Structural annotation	PF10723, NF010256, COG4710	NA	NA
UHGV-0116536_56	PHROG	phrog_937	hemolysin	other
UHGV-0116536_56	eggNOG-mapper	445972.ANACOL_01873	NA	NA
UHGV-0116536_57	PHROG	phrog_1129	holin	lysis
UHGV-0116536_57	UniRef90	UniRef90_A0A1C7FPV3	Enolase	NA
UHGV-0116536_57	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0116536_57	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0116536_57	Structural annotation	PF06946	NA	NA
UHGV-0116536_58	UniRef90	UniRef90_UPI00195BDDF9	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0116536_58	eggNOG-mapper	1121344.JHZO01000003_gene744	Ami_3	NA
UHGV-0116536_58	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA