UHGV-0116630

Genome information

Genome length 37,812 bps

CDS count 51

Completeness 92.29% (high-quality)

geNomad score 0.9602

Prediction confidence Confident

Genome information
Genome ID	UHGV-0116630
vOTU ID	vOTU-062144
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_287271
BioSample	SAMEA4378255
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.29% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9602
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.36
Jumbo phage	No

Genome content
Genome length	37,812 bps
GC content	38.15%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	90.25%
Average CDS length	672.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0116630_1	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0116630_1	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0116630_1	UniRef90	UniRef90_A0A415UCW1	Phage tail tape measure protein	NA
UHGV-0116630_1	eggNOG-mapper	1235799.C818_04231	Phage tail tape measure protein, TP901 family	NA
UHGV-0116630_1	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0116630_2	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0116630_2	UniRef90	UniRef90_A0A415UCK7	MtfA protein	NA
UHGV-0116630_2	eggNOG-mapper	1235799.C818_04232	phage tail	NA
UHGV-0116630_2	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0116630_2	COG	COG4722	Phage-related protein YomH	NA
UHGV-0116630_2	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0116630_3	PHROG	phrog_3558	tail protein	tail
UHGV-0116630_3	UniRef90	UniRef90_A0A415UCM3	Prophage_tail domain-containing protein	NA
UHGV-0116630_3	eggNOG-mapper	411490.ANACAC_00708	Phage minor structural protein	NA
UHGV-0116630_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0116630_3	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0116630_3	COG	COG4926	Phage-related protein	NA
UHGV-0116630_3	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0116630_4	PHROG	phrog_36886	NA	unknown function
UHGV-0116630_4	eggNOG-mapper	665956.HMPREF1032_02937	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0116630_4	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0116630_8	Structural annotation	PF03412	NA	NA
UHGV-0116630_9	PHROG	phrog_37799	NA	unknown function
UHGV-0116630_9	UniRef90	UniRef90_A0A174K913	Phage-related holin (Lysis protein)	NA
UHGV-0116630_9	eggNOG-mapper	610130.Closa_1414	toxin secretion phage lysis holin	NA
UHGV-0116630_9	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0116630_9	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0116630_9	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0116630_9	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0116630_10	KOfam	K07273	acm; lysozyme	NA
UHGV-0116630_10	PHROG	phrog_291	endolysin	lysis
UHGV-0116630_10	UniRef90	UniRef90_A0A174K8T9	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0116630_10	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-0116630_10	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0116630_10	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0116630_10	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0116630_10	Structural annotation	PF01183, PF08230, COG3757	NA	NA
UHGV-0116630_11	KOfam	K14059	int; integrase	NA
UHGV-0116630_11	PHROG	phrog_1	integrase	integration and excision
UHGV-0116630_11	UniRef90	UniRef90_A0A174FJC2	Tyrosine recombinase XerC	NA
UHGV-0116630_11	eggNOG-mapper	411469.EUBHAL_02005	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0116630_11	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0116630_11	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0116630_11	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0116630_11	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0116630_12	PHROG	phrog_13260	NA	unknown function
UHGV-0116630_12	UniRef90	UniRef90_UPI000BF232A4	FunZ	NA
UHGV-0116630_12	eggNOG-mapper	411469.EUBHAL_02004	NA	NA
UHGV-0116630_12	Structural annotation	PF20703, MF_01407, NF001624, COG1474	NA	NA
UHGV-0116630_13	eggNOG-mapper	411470.RUMGNA_03228	NA	NA
UHGV-0116630_14	UniRef90	UniRef90_UPI00129D7E5C	EbhA	NA
UHGV-0116630_14	eggNOG-mapper	1121865.OMW_00786	NA	NA
UHGV-0116630_14	Structural annotation	PF20650	NA	NA
UHGV-0116630_16	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0116630_16	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0116630_16	UniRef90	UniRef90_A0A414B865	XRE family transcriptional regulator	NA
UHGV-0116630_16	eggNOG-mapper	411470.RUMGNA_00191	DNA-binding helix-turn-helix protein	NA
UHGV-0116630_16	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0116630_16	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0116630_16	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0116630_19	PHROG	phrog_1877	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0116630_19	UniRef90	UniRef90_A0A7M3SAM8	HTH_17 domain-containing protein	NA
UHGV-0116630_19	eggNOG-mapper	246199.CUS_5199	Helix-turn-helix domain	NA
UHGV-0116630_19	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0116630_19	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0116630_23	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0116630_23	eggNOG-mapper	97139.C824_06117	NA	NA
UHGV-0116630_23	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0116630_24	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0116630_24	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0116630_24	UniRef90	UniRef90_A0A174KC84	Ribonuclease H	NA
UHGV-0116630_24	eggNOG-mapper	411461.DORFOR_01140	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0116630_24	Pfam	PF00075	RNase H	RNase_H
UHGV-0116630_24	COG	COG0328	Ribonuclease HI	NA
UHGV-0116630_24	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0116630_25	PHROG	phrog_7566	NA	unknown function
UHGV-0116630_25	eggNOG-mapper	97139.C824_00037	NA	NA
UHGV-0116630_27	UniRef90	UniRef90_K1T9Q6	NA	NA
UHGV-0116630_27	Pfam	PF04448	NA	DUF551
UHGV-0116630_31	PHROG	phrog_6568	NA	unknown function
UHGV-0116630_31	eggNOG-mapper	742740.HMPREF9474_02283	NA	NA
UHGV-0116630_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0116630_32	UniRef90	UniRef90_UPI001F372FD7	sigma-70 region 4 domain-containing protein	NA
UHGV-0116630_32	eggNOG-mapper	411459.RUMOBE_00943	NA	NA
UHGV-0116630_32	Structural annotation	PF02996	NA	NA
UHGV-0116630_33	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0116630_33	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0116630_33	UniRef90	UniRef90_UPI001ADDE3D0	ParA family protein	NA
UHGV-0116630_33	eggNOG-mapper	457405.FSDG_01237	plasmid maintenance	NA
UHGV-0116630_33	Pfam	PF13614	AAA domain	AAA_31
UHGV-0116630_33	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0116630_33	Structural annotation	PF01656, MF_00355, NF041283, COG1192	NA	NA
UHGV-0116630_34	PHROG	phrog_6264	NA	unknown function
UHGV-0116630_34	eggNOG-mapper	596329.HMPREF0631_1368	NA	NA
UHGV-0116630_36	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0116630_36	UniRef90	UniRef90_A0A415UCQ6	Terminase	NA
UHGV-0116630_36	eggNOG-mapper	999413.HMPREF1094_00222	DNA packaging	NA
UHGV-0116630_36	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0116630_36	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0116630_36	COG	COG5484	NA	NA
UHGV-0116630_36	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-0116630_37	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0116630_37	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0116630_37	UniRef90	UniRef90_A0A174K6V6	Phage terminase, large subunit, PBSX family	NA
UHGV-0116630_37	eggNOG-mapper	411461.DORFOR_00750	COG COG1783 Phage terminase large subunit	NA
UHGV-0116630_37	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0116630_37	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0116630_37	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0116630_37	COG	COG1783	Phage terminase large subunit	NA
UHGV-0116630_37	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0116630_38	PHROG	phrog_533	portal protein	head and packaging
UHGV-0116630_38	UniRef90	UniRef90_A0A174KAZ9	Phage portal protein, putative, A118 family	NA
UHGV-0116630_38	eggNOG-mapper	411461.DORFOR_00749	COG NOG25118 non supervised orthologous group	NA
UHGV-0116630_38	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0116630_38	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0116630_39	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0116630_39	UniRef90	UniRef90_A0A174K6Q3	Phage minor capsid protein 2	NA
UHGV-0116630_39	eggNOG-mapper	1235792.C808_05364	Phage minor capsid protein 2	NA
UHGV-0116630_39	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0116630_39	COG	COG2369	NA	NA
UHGV-0116630_39	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0116630_40	PHROG	phrog_35328	NA	unknown function
UHGV-0116630_41	KOfam	K07584	NA	NA
UHGV-0116630_41	PHROG	phrog_4478	peptidase	other
UHGV-0116630_41	UniRef90	UniRef90_A0A174K8L3	Predicted ribosomal protein	NA
UHGV-0116630_41	eggNOG-mapper	411461.DORFOR_00746	Pfam:Peptidase_C108	NA
UHGV-0116630_41	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0116630_41	COG	COG2868	NA	NA
UHGV-0116630_41	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0116630_42	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0116630_42	eggNOG-mapper	411461.DORFOR_00745	NA	NA
UHGV-0116630_42	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0116630_43	PHROG	phrog_10	major head protein	head and packaging
UHGV-0116630_43	UniRef90	UniRef90_A0A174K7H3	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0116630_43	eggNOG-mapper	411461.DORFOR_00744	COG NOG20168 non supervised orthologous group	NA
UHGV-0116630_43	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0116630_43	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0116630_43	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0116630_43	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0116630_44	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0116630_44	eggNOG-mapper	411490.ANACAC_00776	NA	NA
UHGV-0116630_44	Pfam	PF20557	Putative DnaT-like ssDNA binding protein	DnaT_2
UHGV-0116630_45	PHROG	phrog_3366	NA	unknown function
UHGV-0116630_45	eggNOG-mapper	411490.ANACAC_00775	NA	NA
UHGV-0116630_45	Pfam	PF20536	NA	DUF6751
UHGV-0116630_45	Structural annotation	PF20536	NA	NA
UHGV-0116630_46	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0116630_46	UniRef90	UniRef90_A0A415G5D7	Capsid protein	NA
UHGV-0116630_46	eggNOG-mapper	411490.ANACAC_00774	Minor capsid protein	NA
UHGV-0116630_46	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0116630_46	Structural annotation	PF11114	NA	NA
UHGV-0116630_47	PHROG	phrog_3266	tail completion	connector
UHGV-0116630_47	UniRef90	UniRef90_A0A415G5E6	Chloramphenicol resistance protein	NA
UHGV-0116630_47	eggNOG-mapper	411490.ANACAC_00773	NA	NA
UHGV-0116630_47	Structural annotation	PF12691	NA	NA
UHGV-0116630_48	PHROG	phrog_3099	NA	unknown function
UHGV-0116630_48	eggNOG-mapper	411490.ANACAC_00772	NA	NA
UHGV-0116630_48	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0116630_49	PHROG	phrog_4450	NA	unknown function
UHGV-0116630_49	eggNOG-mapper	411490.ANACAC_00770	NA	NA
UHGV-0116630_49	Structural annotation	PF20378	NA	NA
UHGV-0116630_50	PHROG	phrog_706	NA	unknown function
UHGV-0116630_50	UniRef90	UniRef90_B0MAY5	Bacteriophage Gp15 protein	NA
UHGV-0116630_50	eggNOG-mapper	411490.ANACAC_00711	Bacteriophage Gp15 protein	NA
UHGV-0116630_50	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0116630_50	Structural annotation	PF06854	NA	NA
UHGV-0116630_51	KOfam	K06200	cstA; carbon starvation protein	NA
UHGV-0116630_51	PHROG	phrog_19074	NA	unknown function
UHGV-0116630_51	UniRef90	UniRef90_UPI001D018A6E	phage tail tape measure protein	NA
UHGV-0116630_51	eggNOG-mapper	411462.DORLON_00777	Phage-related minor tail protein	NA
UHGV-0116630_51	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0116630_51	Pfam	PF02554	Carbon starvation protein CstA	CstA
UHGV-0116630_51	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0116630_51	COG	COG5283	Phage-related tail protein	NA