UHGV-0116643

Genome information

Genome length 30,657 bps

CDS count 43

Completeness 78.58% (medium-quality)

geNomad score 0.9765

Prediction confidence Confident

Genome information
Genome ID	UHGV-0116643
vOTU ID	vOTU-036029
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_291465
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.58% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9765
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.69
Jumbo phage	No

Genome content
Genome length	30,657 bps
GC content	52.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	95.65%
Average CDS length	685.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0116643_2	eggNOG-mapper	552398.HMPREF0866_01593	tail collar domain protein	NA
UHGV-0116643_2	COG	COG4675	Phage tail collar domain	NA
UHGV-0116643_3	PHROG	phrog_19291	NA	unknown function
UHGV-0116643_3	eggNOG-mapper	1232449.BAHV02000021_gene1072	NA	NA
UHGV-0116643_3	Structural annotation	PF02191, COG3823	NA	NA
UHGV-0116643_4	PHROG	phrog_23052	NA	unknown function
UHGV-0116643_4	eggNOG-mapper	1408438.JADD01000040_gene811	NA	NA
UHGV-0116643_4	Structural annotation	PF14879, PF09931, NF033848, NF033147, COG3500	NA	NA
UHGV-0116643_5	PHROG	phrog_1194	NA	unknown function
UHGV-0116643_5	eggNOG-mapper	1504823.CCMM01000008_gene1031	NA	NA
UHGV-0116643_5	Pfam	PF20458	NA	DUF6711
UHGV-0116643_5	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0116643_6	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0116643_6	UniRef90	UniRef90_A0A1M7MWP1	Phage-related protein	NA
UHGV-0116643_6	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0116643_6	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0116643_6	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0116643_7	PHROG	phrog_8355	NA	unknown function
UHGV-0116643_7	UniRef90	UniRef90_A0A1C6K7X9	Bacteriophage Gp15 protein	NA
UHGV-0116643_7	eggNOG-mapper	717606.PaecuDRAFT_3131	Bacteriophage Gp15 protein	NA
UHGV-0116643_8	PHROG	phrog_8300	NA	unknown function
UHGV-0116643_8	eggNOG-mapper	1151292.QEW_2425	NA	NA
UHGV-0116643_8	Structural annotation	PF06896	NA	NA
UHGV-0116643_9	PHROG	phrog_820	major tail protein	tail
UHGV-0116643_9	eggNOG-mapper	1507.HMPREF0262_01184	domain, Protein	NA
UHGV-0116643_9	COG	COG5492	NA	NA
UHGV-0116643_9	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0116643_10	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0116643_10	UniRef90	UniRef90_UPI0003F673FD	minor capsid protein	NA
UHGV-0116643_10	eggNOG-mapper	1282664.H354_06686	NA	NA
UHGV-0116643_10	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0116643_10	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0116643_11	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0116643_11	eggNOG-mapper	585501.HMPREF6123_0831	NA	NA
UHGV-0116643_12	PHROG	phrog_8710	NA	unknown function
UHGV-0116643_12	eggNOG-mapper	33035.JPJF01000093_gene2249	NA	NA
UHGV-0116643_12	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0116643_13	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0116643_13	eggNOG-mapper	1304866.K413DRAFT_0783	NA	NA
UHGV-0116643_14	PHROG	phrog_1378	NA	unknown function
UHGV-0116643_14	eggNOG-mapper	1298920.KI911353_gene4849	NA	NA
UHGV-0116643_15	PHROG	phrog_422	major head protein	head and packaging
UHGV-0116643_15	UniRef90	UniRef90_A0A413RCT9	Capsid protein	NA
UHGV-0116643_15	eggNOG-mapper	552396.HMPREF0863_01635	NA	NA
UHGV-0116643_15	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0116643_16	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0116643_16	eggNOG-mapper	483218.BACPEC_01156	NA	NA
UHGV-0116643_17	PHROG	phrog_774	NA	unknown function
UHGV-0116643_17	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0116643_18	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0116643_18	UniRef90	UniRef90_UPI0018AA82F0	minor capsid protein	NA
UHGV-0116643_18	eggNOG-mapper	394503.Ccel_3295	Phage minor capsid protein 2	NA
UHGV-0116643_18	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0116643_18	COG	COG2733	NA	NA
UHGV-0116643_18	Structural annotation	PF06152, PF03496, NF040688	NA	NA
UHGV-0116643_19	PHROG	phrog_533	portal protein	head and packaging
UHGV-0116643_19	UniRef90	UniRef90_A0A3D5LTG9	Capsid protein	NA
UHGV-0116643_19	eggNOG-mapper	1298920.KI911353_gene4855	NA	NA
UHGV-0116643_19	Structural annotation	PF05133, TIGR01542	NA	NA
UHGV-0116643_20	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0116643_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0116643_21	PHROG	phrog_10250	NA	unknown function
UHGV-0116643_21	UniRef90	UniRef90_A0A373XSH6	Terminase	NA
UHGV-0116643_21	eggNOG-mapper	1282664.H354_06621	Phage terminase, large subunit, PBSX family	NA
UHGV-0116643_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0116643_21	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0116643_22	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0116643_22	UniRef90	UniRef90_UPI001D088AD3	DNA-packaging protein	NA
UHGV-0116643_22	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0116643_22	Structural annotation	PF16677	NA	NA
UHGV-0116643_23	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0116643_27	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0116643_27	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0116643_27	UniRef90	UniRef90_A0A3D5KWI4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0116643_27	eggNOG-mapper	641112.ACOK01000073_gene2878	endodeoxyribonuclease RusA	NA
UHGV-0116643_27	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0116643_27	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0116643_27	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0116643_28	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0116643_28	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0116643_28	UniRef90	UniRef90_A0A3C0IIQ3	DNA primase	NA
UHGV-0116643_28	eggNOG-mapper	641112.ACOK01000073_gene2877	Primase C terminal 2 (PriCT-2)	NA
UHGV-0116643_28	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0116643_28	Pfam	PF13481	AAA domain	AAA_25
UHGV-0116643_28	COG	COG3598	RecA-family ATPase	NA
UHGV-0116643_28	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0116643_29	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0116643_29	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0116643_29	UniRef90	UniRef90_R7GUH4	Helicase C-terminal domain protein	NA
UHGV-0116643_29	eggNOG-mapper	641112.ACOK01000073_gene2876	helicase superfamily c-terminal domain	NA
UHGV-0116643_29	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0116643_29	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0116643_29	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0116643_29	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0116643_29	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0116643_30	PHROG	phrog_2698	NA	unknown function
UHGV-0116643_30	UniRef90	UniRef90_A0A354I850	NA	NA
UHGV-0116643_30	eggNOG-mapper	641112.ACOK01000073_gene2875	NA	NA
UHGV-0116643_30	Structural annotation	PF17426, NF005674	NA	NA
UHGV-0116643_31	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0116643_31	UniRef90	UniRef90_A0A0E3WFZ4	NA	NA
UHGV-0116643_31	eggNOG-mapper	641112.ACOK01000073_gene2874	AAA domain	NA
UHGV-0116643_31	Pfam	PF13479	AAA domain	AAA_24
UHGV-0116643_31	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0116643_33	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0116643_33	PHROG	phrog_1499	NA	unknown function
UHGV-0116643_33	UniRef90	UniRef90_A0A3C0II26	Chromosome segregation protein SMC	NA
UHGV-0116643_33	eggNOG-mapper	641112.ACOK01000073_gene2873	domain protein	NA
UHGV-0116643_33	Pfam	PF13476	AAA domain	AAA_23
UHGV-0116643_33	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0116643_33	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0116643_37	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0116643_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0116643_37	UniRef90	UniRef90_UPI001D027D24	helix-turn-helix domain-containing protein	NA
UHGV-0116643_37	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0116643_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0116643_39	PHROG	phrog_31564	NA	unknown function