UHGV-0116688

Genome information

Genome length 28,059 bps

CDS count 47

Completeness 69.99% (medium-quality)

geNomad score 0.9752

Prediction confidence Confident

Genome information
Genome ID	UHGV-0116688
vOTU ID	vOTU-039723
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_280747
BioSample	SAMEA3888899
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.99% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9752
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.83
Jumbo phage	No

Genome content
Genome length	28,059 bps
GC content	39.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	91.90%
Average CDS length	552.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0116688_1	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0116688_1	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0116688_1	UniRef90	UniRef90_A0A1C6E380	ATPase involved in DNA repair	NA
UHGV-0116688_1	eggNOG-mapper	1225805.J7KGW1_9CAUD	peptidoglycan catabolic process	NA
UHGV-0116688_1	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0116688_1	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0116688_4	PHROG	phrog_88	major tail protein	tail
UHGV-0116688_4	UniRef90	UniRef90_R6MJ85	Major tail protein	NA
UHGV-0116688_4	eggNOG-mapper	1295642.H839_15928	NA	NA
UHGV-0116688_4	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0116688_4	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0116688_5	PHROG	phrog_78	tail terminator	connector
UHGV-0116688_5	eggNOG-mapper	1294142.CINTURNW_1695	NA	NA
UHGV-0116688_5	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0116688_7	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0116688_7	UniRef90	UniRef90_UPI00195DE3AA	phage head-tail connector protein	NA
UHGV-0116688_7	eggNOG-mapper	97138.C820_00227	Phage gp6-like head-tail connector protein	NA
UHGV-0116688_7	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0116688_7	Structural annotation	PF05135	NA	NA
UHGV-0116688_9	PHROG	phrog_422	major head protein	head and packaging
UHGV-0116688_9	UniRef90	UniRef90_A0A7X5KS43	N4-gp56 family major capsid protein	NA
UHGV-0116688_9	eggNOG-mapper	1352230.S6AVV3_9CAUD	NA	NA
UHGV-0116688_9	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0116688_10	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0116688_10	UniRef90	UniRef90_UPI001F06CCD0	NA	NA
UHGV-0116688_10	eggNOG-mapper	1280689.AUJC01000003_gene966	NA	NA
UHGV-0116688_10	Pfam	PF14265	NA	DUF4355
UHGV-0116688_10	Structural annotation	PF14265	NA	NA
UHGV-0116688_12	Structural annotation	NF041921	NA	NA
UHGV-0116688_13	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0116688_13	UniRef90	UniRef90_A0A316P952	Phage head morphogenesis protein	NA
UHGV-0116688_13	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-0116688_13	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0116688_13	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0116688_13	COG	COG2369	NA	NA
UHGV-0116688_13	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0116688_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0116688_14	UniRef90	UniRef90_R6M8W5	Phage protein HK97 gp10 family	NA
UHGV-0116688_14	eggNOG-mapper	1123405.AUMM01000017_gene2703	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0116688_14	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0116688_14	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0116688_14	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0116688_15	PHROG	phrog_64	portal protein	head and packaging
UHGV-0116688_15	UniRef90	UniRef90_A0A7X5KS83	Phage portal protein	NA
UHGV-0116688_15	eggNOG-mapper	1121947.AUHK01000002_gene930	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0116688_15	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0116688_15	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0116688_15	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0116688_16	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0116688_16	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0116688_16	UniRef90	UniRef90_A0A7X5R6H9	PBSX family phage terminase large subunit	NA
UHGV-0116688_16	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-0116688_16	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0116688_16	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0116688_16	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0116688_16	COG	COG1783	Phage terminase large subunit	NA
UHGV-0116688_16	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0116688_17	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0116688_17	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0116688_17	UniRef90	UniRef90_UPI00148DCDDC	terminase small subunit	NA
UHGV-0116688_17	eggNOG-mapper	1449343.JQLQ01000002_gene1532	Terminase small subunit	NA
UHGV-0116688_17	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0116688_17	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0116688_17	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0116688_18	eggNOG-mapper	1196322.A370_01150	transposase activity	NA
UHGV-0116688_18	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0116688_19	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0116688_19	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0116688_19	UniRef90	UniRef90_A0A1R1RFW8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0116688_19	eggNOG-mapper	1122917.KB899683_gene4786	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0116688_19	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0116688_19	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0116688_19	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0116688_19	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0116688_19	Structural annotation	PF00145, MF_02237, TIGR00675, COG0270	NA	NA
UHGV-0116688_20	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0116688_20	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0116688_20	UniRef90	UniRef90_A0A2N5KYN6	Chromosome partitioning protein ParB	NA
UHGV-0116688_20	eggNOG-mapper	1399942.U3PCR3_9CAUD	helicase activity	NA
UHGV-0116688_20	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0116688_20	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0116688_20	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0116688_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0116688_21	UniRef90	UniRef90_A0A1I0FCM6	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0116688_21	eggNOG-mapper	903814.ELI_1292	NA	NA
UHGV-0116688_21	Pfam	PF07374	NA	DUF1492
UHGV-0116688_22	PHROG	phrog_4292	NA	unknown function
UHGV-0116688_25	PHROG	phrog_25754	NA	unknown function
UHGV-0116688_25	eggNOG-mapper	97139.C824_00736	NA	NA
UHGV-0116688_25	Structural annotation	PF18195, MF_01077, NF000936, COG4568	NA	NA
UHGV-0116688_26	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-0116688_26	Structural annotation	PF13384, COG2771	NA	NA
UHGV-0116688_28	eggNOG-mapper	411461.DORFOR_01156	NA	NA
UHGV-0116688_28	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0116688_29	PHROG	phrog_15609	NA	unknown function
UHGV-0116688_29	UniRef90	UniRef90_UPI00140878D5	NA	NA
UHGV-0116688_29	eggNOG-mapper	632245.CLP_1620	NA	NA
UHGV-0116688_29	Pfam	PF11300	NA	DUF3102
UHGV-0116688_29	COG	COG0188	DNA gyrase/topoisomerase IV, subunit A	NA
UHGV-0116688_29	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-0116688_30	PHROG	phrog_8470	NA	unknown function
UHGV-0116688_30	UniRef90	UniRef90_A0A8J6J707	PcfJ domain-containing protein	NA
UHGV-0116688_30	eggNOG-mapper	1123288.SOV_1c10520	PcfJ-like protein	NA
UHGV-0116688_30	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0116688_30	Structural annotation	PF14284	NA	NA
UHGV-0116688_31	PHROG	phrog_36399	NA	unknown function
UHGV-0116688_31	eggNOG-mapper	1007096.BAGW01000031_gene116	NA	NA
UHGV-0116688_34	KOfam	K03700	recU; recombination protein U	NA
UHGV-0116688_34	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0116688_34	UniRef90	UniRef90_A0A4S2H9R9	Holliday junction resolvase RecU	NA
UHGV-0116688_34	eggNOG-mapper	1211817.CCAT010000012_gene2726	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0116688_34	Pfam	PF03838	Recombination protein U	RecU
UHGV-0116688_34	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0116688_34	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0116688_36	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0116688_36	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-0116688_36	Structural annotation	PF01446	NA	NA
UHGV-0116688_45	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0116688_45	UniRef90	UniRef90_UPI000E51362F	helix-turn-helix domain-containing protein	NA
UHGV-0116688_45	eggNOG-mapper	1121289.JHVL01000079_gene1187	Helix-turn-helix XRE-family like proteins	NA
UHGV-0116688_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0116688_45	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0116688_46	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0116688_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0116688_46	UniRef90	UniRef90_UPI0015F3DE1D	helix-turn-helix domain-containing protein	NA
UHGV-0116688_46	eggNOG-mapper	663278.Ethha_2423	sequence-specific DNA binding	NA
UHGV-0116688_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0116688_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0116688_47	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0116688_47	PHROG	phrog_95	integrase	integration and excision
UHGV-0116688_47	UniRef90	UniRef90_A0A2K9P4Y1	Resolvase domain protein	NA
UHGV-0116688_47	eggNOG-mapper	903814.ELI_1010	Resolvase, N terminal domain	NA
UHGV-0116688_47	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0116688_47	Pfam	PF07508	Recombinase	Recombinase
UHGV-0116688_47	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0116688_47	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0116688_47	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA