UHGV-0116695

Genome information

Genome length 28,272 bps

CDS count 49

Completeness 83.56% (medium-quality)

geNomad score 0.9681

Prediction confidence Confident

Genome information
Genome ID	UHGV-0116695
vOTU ID	vOTU-038166
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_309069
BioSample	SAMEA37120918
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.56% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9681
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.31
Jumbo phage	No

Genome content
Genome length	28,272 bps
GC content	37.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	91.38%
Average CDS length	530.51 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0116695_1	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0116695_1	UniRef90	UniRef90_A0A2V2F1H4	Prophage_tail domain-containing protein	NA
UHGV-0116695_1	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0116695_1	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0116695_1	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0116695_1	COG	COG4926	Phage-related protein	NA
UHGV-0116695_2	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0116695_2	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-0116695_2	eggNOG-mapper	1497679.EP56_07715	tail component	NA
UHGV-0116695_2	COG	COG4722	Phage-related protein YomH	NA
UHGV-0116695_2	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0116695_3	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-0116695_3	UniRef90	UniRef90_UPI000C7C3162	phage tail tape measure protein	NA
UHGV-0116695_3	eggNOG-mapper	742738.HMPREF9460_04078	domain protein	NA
UHGV-0116695_3	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0116695_3	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0116695_3	Structural annotation	PF20155, TIGR01760, COG5280	NA	NA
UHGV-0116695_4	PHROG	phrog_3033	NA	unknown function
UHGV-0116695_4	eggNOG-mapper	1341157.RF007C_02605	NA	NA
UHGV-0116695_5	PHROG	phrog_709	NA	unknown function
UHGV-0116695_5	eggNOG-mapper	1410624.JNKK01000017_gene1983	NA	NA
UHGV-0116695_5	Structural annotation	PF11836	NA	NA
UHGV-0116695_6	PHROG	phrog_88	major tail protein	tail
UHGV-0116695_6	UniRef90	UniRef90_A0A2G3E1N0	Cadherin-like domain-containing protein	NA
UHGV-0116695_6	eggNOG-mapper	689781.AUJX01000031_gene105	phage major tail protein, phi13 family	NA
UHGV-0116695_6	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0116695_6	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0116695_6	Structural annotation	PF06488, PF18316, TIGR01603, COG3498	NA	NA
UHGV-0116695_7	PHROG	phrog_78	tail terminator	connector
UHGV-0116695_7	eggNOG-mapper	1408311.JNJM01000036_gene52	NA	NA
UHGV-0116695_7	Structural annotation	PF20765	NA	NA
UHGV-0116695_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0116695_8	UniRef90	UniRef90_A0A8J6PH82	HK97 gp10 family phage protein	NA
UHGV-0116695_8	eggNOG-mapper	411471.SUBVAR_05855	NA	NA
UHGV-0116695_8	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0116695_8	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0116695_9	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0116695_9	UniRef90	UniRef90_A0A2V2GSS5	Phage head-tail adapter protein	NA
UHGV-0116695_9	eggNOG-mapper	1226322.HMPREF1545_00118	NA	NA
UHGV-0116695_9	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0116695_10	PHROG	phrog_2550	NA	unknown function
UHGV-0116695_10	UniRef90	UniRef90_UPI001E35E63D	phage head-tail connector protein	NA
UHGV-0116695_10	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0116695_10	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0116695_11	PHROG	phrog_10	major head protein	head and packaging
UHGV-0116695_11	UniRef90	UniRef90_A0A1Y4R494	Phage major capsid protein	NA
UHGV-0116695_11	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-0116695_11	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0116695_11	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0116695_11	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0116695_11	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0116695_11	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0116695_12	KOfam	K06904	NA	NA
UHGV-0116695_12	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0116695_12	UniRef90	UniRef90_A0A0D8IYC2	HK97 family phage prohead protease	NA
UHGV-0116695_12	eggNOG-mapper	1226322.HMPREF1545_00115	Phage prohead protease, HK97 family	NA
UHGV-0116695_12	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0116695_12	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0116695_12	COG	COG3740	Phage head maturation protease	NA
UHGV-0116695_12	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0116695_13	PHROG	phrog_12	portal protein	head and packaging
UHGV-0116695_13	UniRef90	UniRef90_A0A847XBG9	Phage portal protein	NA
UHGV-0116695_13	eggNOG-mapper	491915.Aflv_0662	Phage portal protein	NA
UHGV-0116695_13	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0116695_13	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0116695_13	Structural annotation	PF04860, TIGR01537	NA	NA
UHGV-0116695_14	PHROG	phrog_12	portal protein	head and packaging
UHGV-0116695_14	UniRef90	UniRef90_A0A1Y4R7B9	Phage portal protein	NA
UHGV-0116695_14	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0116695_14	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0116695_14	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0116695_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0116695_15	UniRef90	UniRef90_A0A0D8IV16	Terminase	NA
UHGV-0116695_15	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0116695_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0116695_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0116695_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0116695_15	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0116695_16	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0116695_16	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0116695_16	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0116695_16	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0116695_16	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0116695_18	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0116695_18	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0116695_18	UniRef90	UniRef90_A0A2V2GQ57	HNH endonuclease	NA
UHGV-0116695_18	eggNOG-mapper	1226322.HMPREF1545_00111	HNH nucleases	NA
UHGV-0116695_18	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0116695_18	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0116695_18	Structural annotation	TIGR02646	NA	NA
UHGV-0116695_19	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0116695_19	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0116695_21	UniRef90	UniRef90_R7EVG2	Thymidylate synthase ThyX	NA
UHGV-0116695_21	eggNOG-mapper	1235793.C809_02394	NA	NA
UHGV-0116695_21	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0116695_21	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0116695_22	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0116695_22	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0116695_22	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0116695_22	Structural annotation	PF14354, PF02701, TIGR03655, NF041869, COG3478	NA	NA
UHGV-0116695_26	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0116695_26	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0116695_26	UniRef90	UniRef90_UPI001C1EEAFD	DNA cytosine methyltransferase	NA
UHGV-0116695_26	eggNOG-mapper	1408823.AXUS01000047_gene2901	C-5 cytosine-specific DNA methylase	NA
UHGV-0116695_26	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0116695_26	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0116695_26	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0116695_26	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0116695_26	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0116695_27	PHROG	phrog_5444	NA	unknown function
UHGV-0116695_27	eggNOG-mapper	1239384.K4MPU6_9CAUD	NA	NA
UHGV-0116695_28	KOfam	K01494	dcd; dCTP deaminase [EC:3.5.4.13]	NA
UHGV-0116695_28	PHROG	phrog_1663	dCTP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0116695_28	UniRef90	UniRef90_A0A1I1YTW5	dCTP deaminase, dUMP-forming	NA
UHGV-0116695_28	eggNOG-mapper	641107.CDLVIII_5566	Belongs to the dCTP deaminase family	NA
UHGV-0116695_28	NCBIFam	TIGR02274.1	dCTP deaminase	NA
UHGV-0116695_28	COG	COG0717	dCTP deaminase	NA
UHGV-0116695_28	Structural annotation	PF06559, MF_00146, TIGR02274, COG0717	NA	NA
UHGV-0116695_29	PHROG	phrog_6802	NA	unknown function
UHGV-0116695_29	eggNOG-mapper	1256908.HMPREF0373_03028	NA	NA
UHGV-0116695_30	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0116695_30	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0116695_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0116695_30	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0116695_30	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0116695_32	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0116695_32	UniRef90	UniRef90_A0A1C6FPW9	Superfamily II helicase and inactivated derivatives	NA
UHGV-0116695_32	eggNOG-mapper	1007096.BAGW01000023_gene149	NA	NA
UHGV-0116695_32	Pfam	PF06048	NA	DUF927
UHGV-0116695_32	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0116695_32	COG	COG5519	NA	NA
UHGV-0116695_32	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0116695_33	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0116695_33	PHROG	phrog_11992	NA	unknown function
UHGV-0116695_33	UniRef90	UniRef90_A0A2U1BEF8	CHC2-type zinc finger protein	NA
UHGV-0116695_33	eggNOG-mapper	1514668.JOOA01000002_gene2050	CHC2 zinc finger domain protein	NA
UHGV-0116695_33	PADLOC	drt-UG29	DRT	DRT
UHGV-0116695_33	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0116695_33	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0116695_33	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0116695_34	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0116695_34	UniRef90	UniRef90_R6N0P8	ERCC4 domain-containing protein	NA
UHGV-0116695_34	eggNOG-mapper	1304866.K413DRAFT_0825	resolution of meiotic recombination intermediates	NA
UHGV-0116695_34	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0116695_34	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0116695_34	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0116695_35	PHROG	phrog_18107	NA	unknown function
UHGV-0116695_35	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0116695_35	Structural annotation	PF05037	NA	NA
UHGV-0116695_36	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0116695_36	UniRef90	UniRef90_A0A316RHU5	ATP-binding protein	NA
UHGV-0116695_36	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0116695_36	Pfam	PF13479	AAA domain	AAA_24
UHGV-0116695_36	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0116695_40	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0116695_40	Structural annotation	PF20432, MF_00535, NF041951, COG1396	NA	NA
UHGV-0116695_44	UniRef90	UniRef90_UPI000A04E020	helix-turn-helix transcriptional regulator	NA
UHGV-0116695_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0116695_44	Structural annotation	PF21291, NF041951, COG3655	NA	NA
UHGV-0116695_45	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0116695_45	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0116695_45	UniRef90	UniRef90_UPI0013795F20	helix-turn-helix domain-containing protein	NA
UHGV-0116695_45	eggNOG-mapper	718252.FP2_06870	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0116695_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0116695_45	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0116695_45	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0116695_45	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0116695_47	KOfam	K14059	int; integrase	NA
UHGV-0116695_47	PHROG	phrog_1	integrase	integration and excision
UHGV-0116695_47	UniRef90	UniRef90_R6ZYN0	Site-specific recombinase phage integrase family	NA
UHGV-0116695_47	eggNOG-mapper	1095750.HMPREF9970_1688	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0116695_47	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0116695_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0116695_47	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0116695_47	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0116695_48	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0116695_48	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0116695_48	UniRef90	UniRef90_A0A358WD14	HicB family protein	NA
UHGV-0116695_48	eggNOG-mapper	479436.Vpar_1727	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0116695_48	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0116695_48	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0116695_48	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0116695_49	eggNOG-mapper	478749.BRYFOR_07601	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0116695_49	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA