UHGV-0116719

Genome information

Genome length 40,372 bps

CDS count 78

Completeness 99.90% (high-quality)

geNomad score 0.9827

Prediction confidence Confident

Genome information
Genome ID	UHGV-0116719
vOTU ID	vOTU-014805
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_302875
BioSample	SAMEA103958112
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9827
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.03
Jumbo phage	No

Genome content
Genome length	40,372 bps
GC content	54.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	78
CDS density	92.63%
Average CDS length	484.27 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0116719_1	PHROG	phrog_7115	NA	unknown function
UHGV-0116719_1	UniRef90	UniRef90_A0A810PSE6	bPH_1 domain-containing protein	NA
UHGV-0116719_1	eggNOG-mapper	1514668.JOOA01000002_gene2950	Bacterial PH domain	NA
UHGV-0116719_1	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-0116719_2	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0116719_2	UniRef90	UniRef90_A0A3D1JBH2	Phage tail protein (Fragment)	NA
UHGV-0116719_2	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-0116719_2	COG	COG1511	NA	NA
UHGV-0116719_2	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0116719_3	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0116719_4	PHROG	phrog_13879	NA	unknown function
UHGV-0116719_4	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-0116719_4	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-0116719_6	KOfam	K01361	E3.4.21.96; lactocepin [EC:3.4.21.96]	NA
UHGV-0116719_6	PHROG	phrog_11157	NA	unknown function
UHGV-0116719_6	UniRef90	UniRef90_UPI001C10C6DC	Ig-like domain-containing protein	NA
UHGV-0116719_6	eggNOG-mapper	1256908.HMPREF0373_00674	NA	NA
UHGV-0116719_6	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0116719_6	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0116719_6	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0116719_6	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0116719_7	PHROG	phrog_18725	NA	unknown function
UHGV-0116719_7	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0116719_7	Structural annotation	PF13754, COG2372	NA	NA
UHGV-0116719_8	Structural annotation	PF13620, NF040788, COG2512	NA	NA
UHGV-0116719_10	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0116719_11	PHROG	phrog_4105	NA	unknown function
UHGV-0116719_11	eggNOG-mapper	428125.CLOLEP_01431	NA	NA
UHGV-0116719_12	PHROG	phrog_13256	NA	unknown function
UHGV-0116719_12	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0116719_14	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0116719_14	PHROG	phrog_18955	NA	unknown function
UHGV-0116719_14	UniRef90	UniRef90_UPI001C035E39	D-Ala-D-Ala carboxypeptidase family metallohydrolase	NA
UHGV-0116719_14	eggNOG-mapper	1235797.C816_04171	Peptidase M15	NA
UHGV-0116719_14	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0116719_14	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0116719_14	COG	COG3108	NA	NA
UHGV-0116719_14	Structural annotation	PF09992, PF08291, COG4632, COG3108	NA	NA
UHGV-0116719_17	PHROG	phrog_3754	NA	unknown function
UHGV-0116719_17	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0116719_18	PHROG	phrog_21718	NA	unknown function
UHGV-0116719_18	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0116719_19	PHROG	phrog_22984	NA	unknown function
UHGV-0116719_20	PHROG	phrog_16490	NA	unknown function
UHGV-0116719_20	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0116719_21	PHROG	phrog_20016	NA	unknown function
UHGV-0116719_21	UniRef90	UniRef90_A0A2Z4QB67	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0116719_21	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0116719_21	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0116719_22	Structural annotation	PF12510	NA	NA
UHGV-0116719_23	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-0116719_24	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0116719_24	PHROG	phrog_95	integrase	integration and excision
UHGV-0116719_24	UniRef90	UniRef90_A0A3A9I9T1	Recombinase family protein	NA
UHGV-0116719_24	eggNOG-mapper	357809.Cphy_2997	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0116719_24	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0116719_24	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0116719_24	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0116719_24	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0116719_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0116719_25	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0116719_25	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0116719_26	Structural annotation	PF12688	NA	NA
UHGV-0116719_30	eggNOG-mapper	883114.HMPREF9709_01223	NA	NA
UHGV-0116719_30	Structural annotation	PF05354, TIGR01563, COG5614	NA	NA
UHGV-0116719_32	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0116719_32	Structural annotation	NF007257, COG1396	NA	NA
UHGV-0116719_33	UniRef90	UniRef90_A0A810QCI5	HTH cro/C1-type domain-containing protein	NA
UHGV-0116719_33	eggNOG-mapper	1514668.JOOA01000002_gene1643	NA	NA
UHGV-0116719_33	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0116719_33	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0116719_33	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0116719_36	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0116719_37	PHROG	phrog_4973	NA	unknown function
UHGV-0116719_37	UniRef90	UniRef90_A0A3D3Y5F2	DNA-binding protein	NA
UHGV-0116719_37	eggNOG-mapper	935261.JAGL01000009_gene1175	Helix-turn-helix domain	NA
UHGV-0116719_37	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0116719_37	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0116719_38	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0116719_38	UniRef90	UniRef90_A0A1C5N4H2	Siphovirus Gp157	NA
UHGV-0116719_38	eggNOG-mapper	1410670.JHXF01000015_gene2268	Siphovirus Gp157	NA
UHGV-0116719_38	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0116719_38	Structural annotation	PF05565	NA	NA
UHGV-0116719_39	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0116719_39	UniRef90	UniRef90_A0A3D1PJF8	Single-stranded DNA-binding protein	NA
UHGV-0116719_39	eggNOG-mapper	1304866.K413DRAFT_1196	ERF superfamily	NA
UHGV-0116719_39	Pfam	PF04404	ERF superfamily	ERF
UHGV-0116719_39	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0116719_39	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0116719_40	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0116719_40	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0116719_40	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0116719_40	Structural annotation	PF05772	NA	NA
UHGV-0116719_41	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0116719_41	UniRef90	UniRef90_UPI001C122365	HNH endonuclease	NA
UHGV-0116719_41	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0116719_42	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0116719_42	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0116719_42	UniRef90	UniRef90_A0A1C5QDM6	Single-stranded DNA-binding protein	NA
UHGV-0116719_42	eggNOG-mapper	1226322.HMPREF1545_04080	Single-strand binding protein family	NA
UHGV-0116719_42	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0116719_42	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0116719_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0116719_42	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0116719_42	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0116719_43	PHROG	phrog_2149	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0116719_43	UniRef90	UniRef90_A0A417QFV0	Transcriptional regulator	NA
UHGV-0116719_43	eggNOG-mapper	742740.HMPREF9474_03117	NA	NA
UHGV-0116719_43	Structural annotation	PF01978, NF000243, COG0735	NA	NA
UHGV-0116719_45	Structural annotation	PF21485	NA	NA
UHGV-0116719_47	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0116719_47	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0116719_47	UniRef90	UniRef90_A0A7X8IB41	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0116719_47	eggNOG-mapper	469604.HMPREF0946_00819	NA	NA
UHGV-0116719_47	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0116719_49	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0116719_49	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0116719_49	UniRef90	UniRef90_A0A1Q6RQI3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0116719_49	eggNOG-mapper	1235797.C816_01614	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0116719_49	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-0116719_49	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0116719_49	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0116719_49	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0116719_50	PHROG	phrog_15198	NA	unknown function
UHGV-0116719_50	UniRef90	UniRef90_A0A373NR41	NA	NA
UHGV-0116719_50	eggNOG-mapper	411470.RUMGNA_00214	NA	NA
UHGV-0116719_50	Pfam	PF04448	NA	DUF551
UHGV-0116719_51	PHROG	phrog_38832	NA	unknown function
UHGV-0116719_51	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0116719_51	Structural annotation	PF07073	NA	NA
UHGV-0116719_52	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0116719_52	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0116719_52	UniRef90	UniRef90_A0A417HX51	HNH endonuclease	NA
UHGV-0116719_52	eggNOG-mapper	742740.HMPREF9474_03129	HNH endonuclease	NA
UHGV-0116719_52	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0116719_52	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0116719_52	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0116719_53	Structural annotation	PF18300, NF000331, COG4568	NA	NA
UHGV-0116719_59	KOfam	K02647	cdaR; carbohydrate diacid regulator	NA
UHGV-0116719_59	UniRef90	UniRef90_UPI00164DE10C	helix-turn-helix domain-containing protein	NA
UHGV-0116719_59	eggNOG-mapper	1301100.HG529387_gene5110	Putative sugar diacid recognition	NA
UHGV-0116719_59	Pfam	PF13556	PucR C-terminal helix-turn-helix domain	HTH_30
UHGV-0116719_59	COG	COG3835	Sugar diacid utilization regulator CdaR	NA
UHGV-0116719_59	Structural annotation	PF13556, TIGR00637, COG2771	NA	NA
UHGV-0116719_60	Structural annotation	PF06003, MF_01354, TIGR00739, COG5475	NA	NA
UHGV-0116719_61	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0116719_61	UniRef90	UniRef90_A0A1C6J963	Helix-turn-helix	NA
UHGV-0116719_61	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0116719_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0116719_61	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0116719_62	PHROG	phrog_872	NA	unknown function
UHGV-0116719_62	UniRef90	UniRef90_A0A8J6M9F5	NA	NA
UHGV-0116719_62	eggNOG-mapper	1519439.JPJG01000060_gene1880	NA	NA
UHGV-0116719_62	Pfam	PF11195	NA	DUF2829
UHGV-0116719_62	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0116719_62	Structural annotation	PF11195	NA	NA
UHGV-0116719_63	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0116719_63	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0116719_63	UniRef90	UniRef90_A0A810Q3Z7	N6_N4_Mtase domain-containing protein	NA
UHGV-0116719_63	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0116719_63	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0116719_63	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0116719_63	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0116719_63	COG	COG0863	DNA modification methylase	NA
UHGV-0116719_63	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0116719_65	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0116719_65	UniRef90	UniRef90_UPI00166CA12B	terminase family protein	NA
UHGV-0116719_65	eggNOG-mapper	1140001.I571_01829	NA	NA
UHGV-0116719_65	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5323	NA	NA
UHGV-0116719_66	PHROG	phrog_64	portal protein	head and packaging
UHGV-0116719_66	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0116719_66	eggNOG-mapper	1235800.C819_02239	phage portal protein, SPP1	NA
UHGV-0116719_66	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0116719_66	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0116719_67	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0116719_67	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0116719_67	eggNOG-mapper	1111121.HMPREF1247_0797	cell adhesion	NA
UHGV-0116719_67	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0116719_67	COG	COG2369	NA	NA
UHGV-0116719_67	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0116719_69	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0116719_69	UniRef90	UniRef90_A0A4D7AJK9	HK97 gp10 family phage protein	NA
UHGV-0116719_69	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-0116719_69	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0116719_69	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0116719_70	Structural annotation	PF18152	NA	NA
UHGV-0116719_71	Structural annotation	PF06810	NA	NA
UHGV-0116719_72	PHROG	phrog_544	major head protein	head and packaging
UHGV-0116719_72	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0116719_72	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0116719_72	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0116719_74	PHROG	phrog_17977	NA	unknown function
UHGV-0116719_74	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0116719_74	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0116719_75	PHROG	phrog_17405	head protein	head and packaging
UHGV-0116719_75	Structural annotation	PF11367	NA	NA
UHGV-0116719_76	PHROG	phrog_885	major tail protein	tail
UHGV-0116719_76	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0116719_76	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0116719_76	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA