UHGV-0116731

Genome information

Genome length 33,181 bps

CDS count 56

Completeness 88.15% (medium-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-0116731
vOTU ID	vOTU-032772
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_298129
BioSample	SAMEA4431909
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.15% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.59
Jumbo phage	No

Genome content
Genome length	33,181 bps
GC content	39.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	92.61%
Average CDS length	553.98 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0116731_1	eggNOG-mapper	511680.BUTYVIB_01634	NA	NA
UHGV-0116731_1	Structural annotation	PF02701	NA	NA
UHGV-0116731_3	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0116731_3	UniRef90	UniRef90_A0A396QPY6	XRE family transcriptional regulator	NA
UHGV-0116731_3	eggNOG-mapper	476272.RUMHYD_03305	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0116731_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0116731_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0116731_3	Structural annotation	PF08667, NF041951, COG3655	NA	NA
UHGV-0116731_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0116731_4	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0116731_4	UniRef90	UniRef90_A0A396QFT7	XRE family transcriptional regulator	NA
UHGV-0116731_4	eggNOG-mapper	1321782.HMPREF1986_02244	Helix-turn-helix domain	NA
UHGV-0116731_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0116731_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0116731_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0116731_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0116731_10	eggNOG-mapper	1235792.C808_03089	NA	NA
UHGV-0116731_14	KOfam	K07459	ybjD; putative ATP-dependent endonuclease of the OLD family	NA
UHGV-0116731_14	PHROG	phrog_1499	NA	unknown function
UHGV-0116731_14	UniRef90	UniRef90_A0A2N5P5I0	AAA_23 domain-containing protein	NA
UHGV-0116731_14	eggNOG-mapper	742733.HMPREF9469_01850	DNA recombination	NA
UHGV-0116731_14	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0116731_14	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0116731_15	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0116731_15	UniRef90	UniRef90_UPI0011C8A287	recombinase RecT	NA
UHGV-0116731_15	eggNOG-mapper	742733.HMPREF9469_01849	NA	NA
UHGV-0116731_15	Pfam	PF03837	RecT family	RecT
UHGV-0116731_15	Structural annotation	TIGR01913, COG3723	NA	NA
UHGV-0116731_16	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0116731_16	UniRef90	UniRef90_A0A4P6LTY0	NA	NA
UHGV-0116731_16	eggNOG-mapper	33035.JPJF01000071_gene4463	NA	NA
UHGV-0116731_16	Pfam	PF12684	NA	DUF3799
UHGV-0116731_16	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0116731_16	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0116731_17	PHROG	phrog_7566	NA	unknown function
UHGV-0116731_17	UniRef90	UniRef90_A0A373CFM5	ClpX-type ZB domain-containing protein	NA
UHGV-0116731_17	eggNOG-mapper	742733.HMPREF9469_01847	NA	NA
UHGV-0116731_18	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0116731_18	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0116731_18	UniRef90	UniRef90_A0A0F0CCS0	Endodeoxyribonuclease RusA	NA
UHGV-0116731_18	eggNOG-mapper	742733.HMPREF9469_01846	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0116731_18	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0116731_18	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0116731_19	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0116731_19	UniRef90	UniRef90_UPI001D090F0C	conserved phage C-terminal domain-containing protein	NA
UHGV-0116731_19	eggNOG-mapper	796940.HMPREF9628_00167	NA	NA
UHGV-0116731_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0116731_20	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0116731_20	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0116731_20	UniRef90	UniRef90_S2ZLG6	IstB_IS21 domain-containing protein	NA
UHGV-0116731_20	eggNOG-mapper	476272.RUMHYD_03359	DNA-dependent DNA replication	NA
UHGV-0116731_20	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0116731_20	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0116731_20	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0116731_23	PHROG	phrog_16351	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0116731_23	eggNOG-mapper	665950.HMPREF1025_02544	NA	NA
UHGV-0116731_25	PHROG	phrog_6730	NA	unknown function
UHGV-0116731_25	eggNOG-mapper	1136534.J9PTY8_9CAUD	NA	NA
UHGV-0116731_25	Structural annotation	PF00684	NA	NA
UHGV-0116731_26	PHROG	phrog_15198	NA	unknown function
UHGV-0116731_26	UniRef90	UniRef90_A0A3E2WD56	NA	NA
UHGV-0116731_27	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0116731_27	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0116731_27	UniRef90	UniRef90_UPI001D060E45	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0116731_27	eggNOG-mapper	1232452.BAIB02000007_gene1640	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0116731_27	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0116731_27	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0116731_27	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0116731_27	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0116731_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0116731_30	UniRef90	UniRef90_A0A1C5X3K2	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0116731_30	eggNOG-mapper	742723.HMPREF9477_00916	NA	NA
UHGV-0116731_30	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0116731_31	PHROG	phrog_2412	NA	unknown function
UHGV-0116731_31	UniRef90	UniRef90_UPI001E414EFE	KGG domain-containing protein	NA
UHGV-0116731_31	eggNOG-mapper	742765.HMPREF9457_02118	NA	NA
UHGV-0116731_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0116731_32	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0116731_32	UniRef90	UniRef90_A5KPA1	Phage terminase, large subunit, PBSX family	NA
UHGV-0116731_32	eggNOG-mapper	411460.RUMTOR_02085	NA	NA
UHGV-0116731_32	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0116731_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0116731_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0116731_32	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0116731_33	PHROG	phrog_533	portal protein	head and packaging
UHGV-0116731_33	UniRef90	UniRef90_A0A174B716	Phage portal protein, putative, A118 family	NA
UHGV-0116731_33	eggNOG-mapper	658655.HMPREF0988_02564	NA	NA
UHGV-0116731_33	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0116731_34	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0116731_34	UniRef90	UniRef90_A0A174BAS8	Phage minor capsid protein 2	NA
UHGV-0116731_34	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-0116731_34	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0116731_34	COG	COG2369	NA	NA
UHGV-0116731_34	Structural annotation	PF06152	NA	NA
UHGV-0116731_35	PHROG	phrog_13199	NA	unknown function
UHGV-0116731_35	eggNOG-mapper	476272.RUMHYD_02851	NA	NA
UHGV-0116731_36	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0116731_36	UniRef90	UniRef90_A5KPA4	Phage minor structural protein GP20	NA
UHGV-0116731_36	eggNOG-mapper	658655.HMPREF0988_02561	Phage minor structural protein GP20	NA
UHGV-0116731_36	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0116731_36	Structural annotation	PF06810	NA	NA
UHGV-0116731_37	PHROG	phrog_422	major head protein	head and packaging
UHGV-0116731_37	eggNOG-mapper	411470.RUMGNA_02219	NA	NA
UHGV-0116731_37	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0116731_38	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0116731_38	eggNOG-mapper	411462.DORLON_00785	NA	NA
UHGV-0116731_39	PHROG	phrog_3366	NA	unknown function
UHGV-0116731_39	eggNOG-mapper	411470.RUMGNA_02221	NA	NA
UHGV-0116731_39	Pfam	PF20536	NA	DUF6751
UHGV-0116731_39	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0116731_40	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0116731_40	UniRef90	UniRef90_UPI001C8E2A32	minor capsid protein	NA
UHGV-0116731_40	eggNOG-mapper	658655.HMPREF0988_02557	NA	NA
UHGV-0116731_40	Structural annotation	PF11114	NA	NA
UHGV-0116731_41	PHROG	phrog_3266	tail completion	connector
UHGV-0116731_41	eggNOG-mapper	658655.HMPREF0988_02556	NA	NA
UHGV-0116731_41	Structural annotation	PF12691	NA	NA
UHGV-0116731_42	PHROG	phrog_3099	NA	unknown function
UHGV-0116731_42	eggNOG-mapper	411470.RUMGNA_02224	NA	NA
UHGV-0116731_42	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0116731_43	PHROG	phrog_4450	NA	unknown function
UHGV-0116731_43	UniRef90	UniRef90_A0A413QHF8	AP endonuclease	NA
UHGV-0116731_43	eggNOG-mapper	1235792.C808_05374	NA	NA
UHGV-0116731_43	Pfam	PF20378	NA	DUF6673
UHGV-0116731_43	Structural annotation	PF20378	NA	NA
UHGV-0116731_44	PHROG	phrog_706	NA	unknown function
UHGV-0116731_44	UniRef90	UniRef90_A0A6N2USM9	Bacteriophage Gp15 protein	NA
UHGV-0116731_44	eggNOG-mapper	658655.HMPREF0988_02553	Bacteriophage Gp15 protein	NA
UHGV-0116731_44	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0116731_44	Structural annotation	PF06854	NA	NA
UHGV-0116731_45	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0116731_45	UniRef90	UniRef90_UPI000E548070	PblA	NA
UHGV-0116731_45	eggNOG-mapper	658655.HMPREF0988_02552	Phage tail tape measure protein, TP901 family	NA
UHGV-0116731_45	COG	COG1511	NA	NA
UHGV-0116731_45	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0116731_46	UniRef90	UniRef90_A0A414P9H2	Phage tail protein	NA
UHGV-0116731_46	eggNOG-mapper	658655.HMPREF0988_02551	NA	NA
UHGV-0116731_46	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0116731_47	PHROG	phrog_538	minor tail protein	tail
UHGV-0116731_47	UniRef90	UniRef90_UPI001E2C8064	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0116731_47	eggNOG-mapper	665950.HMPREF1025_02520	NA	NA
UHGV-0116731_47	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0116731_47	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0116731_48	PHROG	phrog_13141	NA	unknown function
UHGV-0116731_48	UniRef90	UniRef90_UPI001570499E	H-type lectin domain-containing protein	NA
UHGV-0116731_48	eggNOG-mapper	411461.DORFOR_01178	NA	NA
UHGV-0116731_48	Structural annotation	PF20747, NF012201	NA	NA
UHGV-0116731_49	PHROG	phrog_30034	NA	unknown function
UHGV-0116731_49	eggNOG-mapper	742723.HMPREF9477_00891	NA	NA
UHGV-0116731_49	Structural annotation	PF17642	NA	NA
UHGV-0116731_50	PHROG	phrog_1382	NA	unknown function
UHGV-0116731_50	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0116731_50	Structural annotation	NF040910	NA	NA
UHGV-0116731_51	PHROG	phrog_19695	NA	unknown function
UHGV-0116731_51	eggNOG-mapper	476272.RUMHYD_01995	NA	NA
UHGV-0116731_53	PHROG	phrog_1382	NA	unknown function
UHGV-0116731_53	eggNOG-mapper	411468.CLOSCI_00272	NA	NA
UHGV-0116731_54	UniRef90	UniRef90_A0A3R6SMZ1	CTP synthase	NA
UHGV-0116731_54	eggNOG-mapper	411490.ANACAC_00599	NA	NA
UHGV-0116731_55	PHROG	phrog_18218	NA	unknown function
UHGV-0116731_55	UniRef90	UniRef90_A0A396PU34	Ribonuclease	NA
UHGV-0116731_55	eggNOG-mapper	658655.HMPREF0988_02546	NA	NA
UHGV-0116731_55	Structural annotation	PF06946	NA	NA
UHGV-0116731_56	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0116731_56	PHROG	phrog_435	endolysin	lysis
UHGV-0116731_56	UniRef90	UniRef90_UPI001C8E9452	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0116731_56	eggNOG-mapper	1235798.C817_02562	dextransucrase activity	NA
UHGV-0116731_56	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0116731_56	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0116731_56	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA