UHGV-0116733

Genome information

Genome length 20,727 bps

CDS count 47

Completeness 57.05% (medium-quality)

geNomad score 0.9663

Prediction confidence Confident

Genome information
Genome ID	UHGV-0116733
vOTU ID	vOTU-041414
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_278141
BioSample	SAMEA3879599
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.05% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9663
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	3.21
Jumbo phage	No

Genome content
Genome length	20,727 bps
GC content	41.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	87.16%
Average CDS length	389.62 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0116733_1	UniRef90	UniRef90_A0A1G4FQI1	Putative N-acetyltransferase YvbK	NA
UHGV-0116733_1	eggNOG-mapper	428125.CLOLEP_00117	Acetyltransferase (GNAT) domain	NA
UHGV-0116733_1	Pfam	PF13508	Acetyltransferase (GNAT) domain	Acetyltransf_7
UHGV-0116733_1	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0116733_1	Structural annotation	PF12568, MF_02210, NF007025, COG0456	NA	NA
UHGV-0116733_2	KOfam	K01880	GARS, glyS1; glycyl-tRNA synthetase [EC:6.1.1.14]	NA
UHGV-0116733_2	UniRef90	UniRef90_A0A855A6C6	Glycine--tRNA ligase	NA
UHGV-0116733_2	eggNOG-mapper	428125.CLOLEP_00119	Catalyzes the attachment of glycine to tRNA(Gly)	NA
UHGV-0116733_2	Pfam	PF03129	Anticodon binding domain	HGTP_anticodon
UHGV-0116733_2	NCBIFam	NF003211.1	glycine--tRNA ligase	NA
UHGV-0116733_2	COG	COG0423	Glycyl-tRNA synthetase, class II	NA
UHGV-0116733_2	HAMAP	MF_00253_B	Glycine--tRNA ligase [glyQS]	NA
UHGV-0116733_3	KOfam	K14059	int; integrase	NA
UHGV-0116733_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0116733_3	UniRef90	UniRef90_A0A1C6FNS1	Integrase	NA
UHGV-0116733_3	eggNOG-mapper	428125.CLOLEP_01837	Belongs to the 'phage' integrase family	NA
UHGV-0116733_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0116733_3	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0116733_3	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0116733_4	PHROG	phrog_8043	NA	unknown function
UHGV-0116733_4	UniRef90	UniRef90_A0A374JQK3	HIRAN domain-containing protein	NA
UHGV-0116733_4	eggNOG-mapper	411471.SUBVAR_05817	NA	NA
UHGV-0116733_4	Structural annotation	PF08797	NA	NA
UHGV-0116733_6	PHROG	phrog_87	metallo-protease	other
UHGV-0116733_6	UniRef90	UniRef90_A7VVX5	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0116733_6	eggNOG-mapper	428125.CLOLEP_02739	NA	NA
UHGV-0116733_6	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0116733_6	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0116733_6	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0116733_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0116733_7	UniRef90	UniRef90_A0A1C6FNL9	HTH cro/C1-type domain-containing protein	NA
UHGV-0116733_7	eggNOG-mapper	428125.CLOLEP_02738	SMART helix-turn-helix domain protein	NA
UHGV-0116733_7	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0116733_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0116733_7	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0116733_8	UniRef90	UniRef90_UPI001D00CEEC	XRE family transcriptional regulator	NA
UHGV-0116733_8	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-0116733_8	Structural annotation	TIGR03070	NA	NA
UHGV-0116733_10	PHROG	phrog_750	NA	unknown function
UHGV-0116733_10	eggNOG-mapper	478749.BRYFOR_08527	NA	NA
UHGV-0116733_11	PHROG	phrog_4392	NA	unknown function
UHGV-0116733_11	UniRef90	UniRef90_UPI000E489044	membrane lipoprotein lipid attachment site-containing protein	NA
UHGV-0116733_15	UniRef90	UniRef90_UPI00164AC43D	NA	NA
UHGV-0116733_15	Pfam	PF20124	NA	DUF6514
UHGV-0116733_15	Structural annotation	PF20124	NA	NA
UHGV-0116733_16	UniRef90	UniRef90_A0A7U9IDR3	DNA-binding helix-turn-helix protein	NA
UHGV-0116733_16	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0116733_16	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0116733_18	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0116733_18	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0116733_18	UniRef90	UniRef90_A0A372WZL5	XRE family transcriptional regulator	NA
UHGV-0116733_18	eggNOG-mapper	864563.HMPREF9166_0595	Helix-turn-helix XRE-family like proteins	NA
UHGV-0116733_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0116733_18	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0116733_18	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0116733_19	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0116733_19	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0116733_19	UniRef90	UniRef90_A0A372WXU8	XRE family transcriptional regulator	NA
UHGV-0116733_19	eggNOG-mapper	768486.EHR_02755	Helix-turn-helix XRE-family like proteins	NA
UHGV-0116733_19	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0116733_19	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0116733_19	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0116733_24	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0116733_24	UniRef90	UniRef90_A0A412AWF4	ATP-binding protein	NA
UHGV-0116733_24	eggNOG-mapper	1345695.CLSA_c30180	AAA domain	NA
UHGV-0116733_24	Pfam	PF13479	AAA domain	AAA_24
UHGV-0116733_24	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0116733_26	PHROG	phrog_18107	NA	unknown function
UHGV-0116733_26	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0116733_26	Structural annotation	PF05037	NA	NA
UHGV-0116733_27	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0116733_27	UniRef90	UniRef90_R6N0P8	ERCC4 domain-containing protein	NA
UHGV-0116733_27	eggNOG-mapper	476272.RUMHYD_01740	ERCC4 domain	NA
UHGV-0116733_27	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0116733_27	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0116733_27	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0116733_29	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0116733_29	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0116733_29	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0116733_30	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0116733_30	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0116733_30	UniRef90	UniRef90_R6P3P1	SF4 helicase domain-containing protein	NA
UHGV-0116733_30	eggNOG-mapper	476272.RUMHYD_02834	NA	NA
UHGV-0116733_30	Pfam	PF06745	KaiC	ATPase
UHGV-0116733_30	COG	COG0305	Replicative DNA helicase	NA
UHGV-0116733_30	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-0116733_33	PHROG	phrog_21034	NA	unknown function
UHGV-0116733_33	eggNOG-mapper	379066.GAU_1809	NA	NA
UHGV-0116733_34	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0116733_34	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0116733_34	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0116733_36	PHROG	phrog_22543	NA	unknown function
UHGV-0116733_38	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-0116733_38	eggNOG-mapper	742738.HMPREF9460_04055	NA	NA
UHGV-0116733_40	PHROG	phrog_924	NA	unknown function
UHGV-0116733_40	UniRef90	UniRef90_A0A412AV74	NA	NA
UHGV-0116733_40	eggNOG-mapper	1316932.MHH_c17560	NA	NA
UHGV-0116733_40	Pfam	PF04448	NA	DUF551