UHGV-0116753

Genome information

Genome length 34,866 bps

CDS count 57

Completeness 100.00% (complete)

geNomad score 0.9786

Prediction confidence Confident

Genome information
Genome ID	UHGV-0116753
vOTU ID	vOTU-045753
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_287154
BioSample	SAMEA4378233
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9786
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.81
Jumbo phage	No

Genome content
Genome length	34,866 bps
GC content	59.29%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	89.95%
Average CDS length	552.26 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0116753_1	UniRef90	UniRef90_A0A843GWV6	Rubrerythrin domain-containing protein	NA
UHGV-0116753_3	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0116753_6	UniRef90	UniRef90_A0A8D9PDQ3	ECF sigma factor	NA
UHGV-0116753_6	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0116753_6	Structural annotation	PF04545, MF_00674, NF009179, COG1342	NA	NA
UHGV-0116753_7	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0116753_7	PHROG	phrog_6523	endolysin	lysis
UHGV-0116753_7	UniRef90	UniRef90_A0A3D4D7X9	Peptidase_M15_4 domain-containing protein	NA
UHGV-0116753_7	eggNOG-mapper	1519439.JPJG01000023_gene536	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0116753_7	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0116753_7	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0116753_7	Structural annotation	PF02557, MF_01924, NF000380, COG1876	NA	NA
UHGV-0116753_8	PHROG	phrog_13256	NA	unknown function
UHGV-0116753_8	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0116753_10	PHROG	phrog_937	hemolysin	other
UHGV-0116753_10	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0116753_11	PHROG	phrog_27545	NA	unknown function
UHGV-0116753_11	UniRef90	UniRef90_A0A2V2GQB6	Chitin-binding type-3 domain-containing protein	NA
UHGV-0116753_11	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0116753_11	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0116753_11	Structural annotation	PF16170	NA	NA
UHGV-0116753_14	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0116753_14	PHROG	phrog_819	tail protein	tail
UHGV-0116753_14	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0116753_14	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0116753_14	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0116753_17	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0116753_17	PHROG	phrog_6320	tail fiber protein	tail
UHGV-0116753_17	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0116753_19	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0116753_19	COG	COG1579	Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain	NA
UHGV-0116753_19	Structural annotation	PF21605, NF041825, COG3198	NA	NA
UHGV-0116753_20	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0116753_20	Structural annotation	PF14594	NA	NA
UHGV-0116753_21	PHROG	phrog_6616	tail protein	tail
UHGV-0116753_21	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-0116753_21	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0116753_21	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0116753_22	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0116753_23	PHROG	phrog_23464	NA	unknown function
UHGV-0116753_23	UniRef90	UniRef90_UPI00189782F4	phage tail protein	NA
UHGV-0116753_23	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-0116753_23	COG	COG5412	Phage-related protein	NA
UHGV-0116753_23	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0116753_25	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-0116753_26	PHROG	phrog_88	major tail protein	tail
UHGV-0116753_26	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0116753_26	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0116753_27	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0116753_27	UniRef90	UniRef90_R5IIS5	HK97 gp10 family phage protein	NA
UHGV-0116753_27	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-0116753_27	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0116753_27	Structural annotation	TIGR01725	NA	NA
UHGV-0116753_28	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-0116753_28	Structural annotation	PF05657	NA	NA
UHGV-0116753_29	PHROG	phrog_25	head closure Hc1	connector
UHGV-0116753_29	UniRef90	UniRef90_A0A845R2W2	Head-tail adaptor protein	NA
UHGV-0116753_29	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0116753_29	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0116753_29	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0116753_29	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0116753_30	UniRef90	UniRef90_UPI0002DDE99A	head-tail connector protein	NA
UHGV-0116753_30	eggNOG-mapper	1007096.BAGW01000033_gene1600	NA	NA
UHGV-0116753_30	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0116753_30	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0116753_31	PHROG	phrog_10	major head protein	head and packaging
UHGV-0116753_31	UniRef90	UniRef90_UPI001BB4749F	phage major capsid protein	NA
UHGV-0116753_31	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0116753_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0116753_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0116753_31	Structural annotation	PF05065, PF14182, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0116753_32	PHROG	phrog_16951	NA	unknown function
UHGV-0116753_32	eggNOG-mapper	742738.HMPREF9460_04070	NA	NA
UHGV-0116753_32	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0116753_33	PHROG	phrog_12	portal protein	head and packaging
UHGV-0116753_33	UniRef90	UniRef90_UPI0013EF1526	phage portal protein	NA
UHGV-0116753_33	eggNOG-mapper	1007103.AFHW01000142_gene1297	Phage portal protein	NA
UHGV-0116753_33	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0116753_33	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0116753_33	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0116753_33	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0116753_34	PHROG	phrog_502	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0116753_35	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0116753_35	UniRef90	UniRef90_UPI0019583763	terminase large subunit	NA
UHGV-0116753_35	eggNOG-mapper	1007096.BAGW01000012_gene2374	Phage Terminase	NA
UHGV-0116753_35	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0116753_35	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0116753_35	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0116753_35	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0116753_36	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0116753_36	UniRef90	UniRef90_UPI001EDE2A13	phage terminase small subunit P27 family	NA
UHGV-0116753_36	eggNOG-mapper	1007096.BAGW01000012_gene2373	Phage terminase, small subunit	NA
UHGV-0116753_36	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0116753_36	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0116753_36	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0116753_36	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0116753_37	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0116753_37	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0116753_37	UniRef90	UniRef90_A0A1V5IAX9	Methyltransferase	NA
UHGV-0116753_37	eggNOG-mapper	665950.HMPREF1025_02642	DNA methylase	NA
UHGV-0116753_37	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0116753_37	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0116753_37	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0116753_37	COG	COG0863	DNA modification methylase	NA
UHGV-0116753_37	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0116753_38	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0116753_38	UniRef90	UniRef90_UPI001C022B94	HNH endonuclease	NA
UHGV-0116753_38	eggNOG-mapper	693746.OBV_19960	HNH endonuclease	NA
UHGV-0116753_38	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0116753_38	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0116753_38	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0116753_39	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0116753_39	eggNOG-mapper	693746.OBV_19950	NA	NA
UHGV-0116753_39	Structural annotation	PF21578	NA	NA
UHGV-0116753_41	eggNOG-mapper	445972.ANACOL_00168	NA	NA
UHGV-0116753_45	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0116753_45	PHROG	phrog_27290	NA	unknown function
UHGV-0116753_45	UniRef90	UniRef90_UPI001BB4839F	ParB N-terminal domain-containing protein	NA
UHGV-0116753_45	eggNOG-mapper	1007096.BAGW01000033_gene1613	ParB-like nuclease domain	NA
UHGV-0116753_45	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0116753_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0116753_45	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0116753_45	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0116753_46	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0116753_46	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0116753_46	UniRef90	UniRef90_UPI001BB48231	ParA family protein	NA
UHGV-0116753_46	eggNOG-mapper	1007096.BAGW01000011_gene2363	Anion-transporting ATPase	NA
UHGV-0116753_46	Pfam	PF13614	AAA domain	AAA_31
UHGV-0116753_46	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0116753_46	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0116753_49	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0116753_49	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0116753_49	UniRef90	UniRef90_UPI00195856D7	AAA family ATPase	NA
UHGV-0116753_49	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0116753_49	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0116753_49	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0116753_49	COG	COG0305	Replicative DNA helicase	NA
UHGV-0116753_49	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0116753_50	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0116753_50	UniRef90	UniRef90_UPI0002DD08A7	helix-turn-helix domain-containing protein	NA
UHGV-0116753_50	eggNOG-mapper	693746.OBV_19830	DnaD domain protein	NA
UHGV-0116753_50	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0116753_50	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0116753_50	Structural annotation	PF20714, MF_01177, NF040582, COG3355	NA	NA
UHGV-0116753_51	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0116753_51	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0116753_51	UniRef90	UniRef90_UPI001C01DF91	helix-turn-helix transcriptional regulator	NA
UHGV-0116753_51	eggNOG-mapper	1226322.HMPREF1545_00092	Helix-turn-helix XRE-family like proteins	NA
UHGV-0116753_51	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0116753_51	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0116753_51	Structural annotation	PF01381, NF040522, COG1476	NA	NA
UHGV-0116753_52	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0116753_53	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0116753_53	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0116753_53	UniRef90	UniRef90_A0A645JJK5	HTH cro/C1-type domain-containing protein	NA
UHGV-0116753_53	eggNOG-mapper	553184.ATORI0001_1222	Helix-turn-helix XRE-family like proteins	NA
UHGV-0116753_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0116753_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0116753_53	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0116753_55	UniRef90	UniRef90_A0A1Y4C9D7	HTH cro/C1-type domain-containing protein	NA
UHGV-0116753_55	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0116753_56	PHROG	phrog_17982	NA	unknown function
UHGV-0116753_56	eggNOG-mapper	1284686.HMPREF1630_01985	NA	NA
UHGV-0116753_56	Pfam	PF14020	NA	DUF4236
UHGV-0116753_56	Structural annotation	PF14020	NA	NA
UHGV-0116753_57	KOfam	K14059	int; integrase	NA
UHGV-0116753_57	PHROG	phrog_1	integrase	integration and excision
UHGV-0116753_57	UniRef90	UniRef90_A0A8F2JBJ7	Site-specific integrase	NA
UHGV-0116753_57	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0116753_57	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0116753_57	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0116753_57	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0116753_57	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA