UHGV-0116797

Genome information

Genome length 31,108 bps

CDS count 51

Completeness 69.19% (medium-quality)

geNomad score 0.9825

Prediction confidence Confident

Genome information
Genome ID	UHGV-0116797
vOTU ID	vOTU-031743
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_283266
BioSample	SAMEA4378307
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.19% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9825
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.67
Jumbo phage	No

Genome content
Genome length	31,108 bps
GC content	47.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	93.37%
Average CDS length	572.18 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0116797_1	UniRef90	UniRef90_R6RYB6	Thermophilus bacteriophage protein	NA
UHGV-0116797_1	eggNOG-mapper	411470.RUMGNA_03785	NA	NA
UHGV-0116797_2	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0116797_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0116797_2	UniRef90	UniRef90_A0A3D1LAC6	Transcriptional regulator (Fragment)	NA
UHGV-0116797_2	eggNOG-mapper	537007.BLAHAN_04718	NA	NA
UHGV-0116797_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0116797_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0116797_2	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0116797_3	UniRef90	UniRef90_S2ZLJ4	HTH cro/C1-type domain-containing protein	NA
UHGV-0116797_3	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-0116797_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0116797_4	PHROG	phrog_38078	NA	unknown function
UHGV-0116797_4	UniRef90	UniRef90_R6RLN0	Lysozyme	NA
UHGV-0116797_4	eggNOG-mapper	742740.HMPREF9474_04289	Peptidoglycan-binding domain 1 protein	NA
UHGV-0116797_4	Pfam	PF05257	CHAP domain	CHAP
UHGV-0116797_4	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0116797_4	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0116797_4	Structural annotation	PF13457, TIGR02594, NF033202, COG0791	NA	NA
UHGV-0116797_7	eggNOG-mapper	1298920.KI911353_gene541	ATPase involved in DNA repair	NA
UHGV-0116797_7	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0116797_7	Structural annotation	PF07675, NF038128	NA	NA
UHGV-0116797_8	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0116797_9	eggNOG-mapper	1304866.K413DRAFT_0769	NA	NA
UHGV-0116797_10	PHROG	phrog_18725	NA	unknown function
UHGV-0116797_10	eggNOG-mapper	411902.CLOBOL_00123	NA	NA
UHGV-0116797_11	PHROG	phrog_32744	NA	unknown function
UHGV-0116797_11	eggNOG-mapper	411902.CLOBOL_00124	NA	NA
UHGV-0116797_11	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0116797_12	PHROG	phrog_1194	NA	unknown function
UHGV-0116797_12	eggNOG-mapper	411902.CLOBOL_00125	NA	NA
UHGV-0116797_12	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0116797_13	PHROG	phrog_37543	NA	unknown function
UHGV-0116797_13	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0116797_13	COG	COG1511	NA	NA
UHGV-0116797_13	Structural annotation	PF11177, PF09486, TIGR02559, COG3237, COG1842	NA	NA
UHGV-0116797_14	PHROG	phrog_706	NA	unknown function
UHGV-0116797_14	UniRef90	UniRef90_A0A1I0K8S4	Bacteriophage Gp15 protein	NA
UHGV-0116797_14	eggNOG-mapper	411902.CLOBOL_00127	NA	NA
UHGV-0116797_14	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0116797_14	Structural annotation	PF06854	NA	NA
UHGV-0116797_15	PHROG	phrog_11299	NA	unknown function
UHGV-0116797_15	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-0116797_15	Structural annotation	PF10666	NA	NA
UHGV-0116797_16	PHROG	phrog_3099	NA	unknown function
UHGV-0116797_16	eggNOG-mapper	1120746.CCNL01000014_gene2102	NA	NA
UHGV-0116797_16	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0116797_17	PHROG	phrog_3266	tail completion	connector
UHGV-0116797_17	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0116797_17	Structural annotation	PF12691	NA	NA
UHGV-0116797_18	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0116797_18	UniRef90	UniRef90_UPI0008B4CFF0	minor capsid protein	NA
UHGV-0116797_18	eggNOG-mapper	33035.JPJF01000106_gene3128	NA	NA
UHGV-0116797_18	Structural annotation	PF11114	NA	NA
UHGV-0116797_19	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0116797_19	UniRef90	UniRef90_A0A6N2U0I2	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0116797_19	eggNOG-mapper	742740.HMPREF9474_03525	phage regulatory protein, rha family	NA
UHGV-0116797_19	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0116797_19	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0116797_19	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0116797_19	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0116797_20	PHROG	phrog_3366	NA	unknown function
UHGV-0116797_20	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0116797_20	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0116797_22	PHROG	phrog_8680	NA	unknown function
UHGV-0116797_22	UniRef90	UniRef90_UPI0015711ED3	NA	NA
UHGV-0116797_22	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0116797_22	Pfam	PF14386	NA	DUF4417
UHGV-0116797_22	Structural annotation	PF14386	NA	NA
UHGV-0116797_23	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0116797_23	UniRef90	UniRef90_A0A0H3N242	Phage-related protein	NA
UHGV-0116797_23	eggNOG-mapper	645991.Sgly_0324	NA	NA
UHGV-0116797_23	AcrCatalog	cluster_5564	NA	NA
UHGV-0116797_24	PHROG	phrog_18218	NA	unknown function
UHGV-0116797_24	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-0116797_24	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-0116797_24	Structural annotation	PF06946	NA	NA
UHGV-0116797_25	PHROG	phrog_1233	NA	unknown function
UHGV-0116797_25	eggNOG-mapper	33035.JPJF01000106_gene3130	NA	NA
UHGV-0116797_26	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0116797_26	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0116797_27	PHROG	phrog_544	major head protein	head and packaging
UHGV-0116797_27	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0116797_27	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0116797_27	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0116797_28	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0116797_28	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0116797_28	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0116797_28	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0116797_29	PHROG	phrog_28802	NA	unknown function
UHGV-0116797_29	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0116797_30	PHROG	phrog_20016	NA	unknown function
UHGV-0116797_30	UniRef90	UniRef90_A0A345BPX4	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0116797_30	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0116797_30	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0116797_31	PHROG	phrog_16490	NA	unknown function
UHGV-0116797_31	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0116797_32	PHROG	phrog_22984	NA	unknown function
UHGV-0116797_33	PHROG	phrog_21718	NA	unknown function
UHGV-0116797_33	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0116797_35	UniRef90	UniRef90_A0A843HPX3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0116797_35	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-0116797_36	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0116797_36	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0116797_38	PHROG	phrog_3754	NA	unknown function
UHGV-0116797_38	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0116797_40	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0116797_40	UniRef90	UniRef90_A0A1C6CDG2	Phage minor capsid protein 2	NA
UHGV-0116797_40	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0116797_40	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0116797_40	COG	COG2369	NA	NA
UHGV-0116797_40	Structural annotation	PF06152	NA	NA
UHGV-0116797_41	PHROG	phrog_533	portal protein	head and packaging
UHGV-0116797_41	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0116797_41	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0116797_41	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0116797_42	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0116797_42	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0116797_42	UniRef90	UniRef90_R6RP56	Phage terminase large subunit pbsx family	NA
UHGV-0116797_42	eggNOG-mapper	397291.C804_01612	Phage terminase large subunit	NA
UHGV-0116797_42	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0116797_42	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0116797_42	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0116797_42	COG	COG1783	Phage terminase large subunit	NA
UHGV-0116797_42	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0116797_43	PHROG	phrog_37916	NA	unknown function
UHGV-0116797_44	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0116797_44	UniRef90	UniRef90_UPI001F487344	DNA-packaging protein	NA
UHGV-0116797_44	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0116797_44	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0116797_44	Structural annotation	PF16677	NA	NA
UHGV-0116797_45	eggNOG-mapper	224719.Abm4_0278	COG1403 Restriction endonuclease	NA
UHGV-0116797_45	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0116797_45	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0116797_50	PHROG	phrog_33130	NA	unknown function
UHGV-0116797_50	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0116797_51	AcrCatalog	cluster_11670	NA	NA