UHGV-0116800

Genome information

Genome length 27,797 bps

CDS count 43

Completeness 70.92% (medium-quality)

geNomad score 0.9768

Prediction confidence Confident

Genome information
Genome ID	UHGV-0116800
vOTU ID	vOTU-040152
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_283272
BioSample	SAMEA4378307
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.92% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9768
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.72
Jumbo phage	No

Genome content
Genome length	27,797 bps
GC content	44.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	94.30%
Average CDS length	614.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0116800_2	PHROG	phrog_15077	NA	unknown function
UHGV-0116800_2	UniRef90	UniRef90_A0A1M6RQ18	RNA polymerase, alpha chain C terminal domain	NA
UHGV-0116800_2	eggNOG-mapper	742765.HMPREF9457_02110	NA	NA
UHGV-0116800_2	Structural annotation	NF038070	NA	NA
UHGV-0116800_9	PHROG	phrog_6568	NA	unknown function
UHGV-0116800_10	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0116800_10	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-0116800_10	eggNOG-mapper	1304866.K413DRAFT_3028	NA	NA
UHGV-0116800_10	Structural annotation	PF04545	NA	NA
UHGV-0116800_11	AcrCatalog	cluster_86620	NA	NA
UHGV-0116800_12	UniRef90	UniRef90_A0A3A6K7U9	Chemotaxis protein	NA
UHGV-0116800_12	eggNOG-mapper	610130.Closa_1388	NA	NA
UHGV-0116800_12	Structural annotation	NF008671, COG4710	NA	NA
UHGV-0116800_13	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0116800_13	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0116800_13	UniRef90	UniRef90_UPI001592B6B8	terminase small subunit	NA
UHGV-0116800_13	eggNOG-mapper	478749.BRYFOR_07604	terminase, small subunit	NA
UHGV-0116800_13	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0116800_13	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0116800_13	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0116800_13	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0116800_14	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0116800_14	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0116800_14	UniRef90	UniRef90_A0A2T3F008	PBSX family phage terminase large subunit	NA
UHGV-0116800_14	eggNOG-mapper	411461.DORFOR_00750	COG COG1783 Phage terminase large subunit	NA
UHGV-0116800_14	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0116800_14	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0116800_14	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0116800_14	COG	COG1783	Phage terminase large subunit	NA
UHGV-0116800_14	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0116800_15	PHROG	phrog_533	portal protein	head and packaging
UHGV-0116800_15	UniRef90	UniRef90_A0A8B2X328	Phage portal protein	NA
UHGV-0116800_15	eggNOG-mapper	411461.DORFOR_00749	COG NOG25118 non supervised orthologous group	NA
UHGV-0116800_15	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0116800_15	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0116800_16	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0116800_16	UniRef90	UniRef90_A0A8B2X245	Minor capsid protein	NA
UHGV-0116800_16	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-0116800_16	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0116800_16	COG	COG2369	NA	NA
UHGV-0116800_16	Structural annotation	PF06152, COG2369	NA	NA
UHGV-0116800_17	Structural annotation	PF11344	NA	NA
UHGV-0116800_18	KOfam	K07584	NA	NA
UHGV-0116800_18	PHROG	phrog_4478	peptidase	other
UHGV-0116800_18	UniRef90	UniRef90_A0A2T3F038	Ribosomal-processing cysteine protease Prp	NA
UHGV-0116800_18	eggNOG-mapper	1235792.C808_02458	Pfam:Peptidase_C108	NA
UHGV-0116800_18	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0116800_18	COG	COG2868	NA	NA
UHGV-0116800_18	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0116800_19	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0116800_19	eggNOG-mapper	1235792.C808_05367	NA	NA
UHGV-0116800_19	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0116800_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-0116800_20	UniRef90	UniRef90_A0A8B2X5T9	Phage major capsid protein	NA
UHGV-0116800_20	eggNOG-mapper	411461.DORFOR_00744	COG NOG20168 non supervised orthologous group	NA
UHGV-0116800_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0116800_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0116800_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0116800_20	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0116800_21	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0116800_21	eggNOG-mapper	411461.DORFOR_00743	NA	NA
UHGV-0116800_22	PHROG	phrog_3366	NA	unknown function
UHGV-0116800_22	eggNOG-mapper	742765.HMPREF9457_02129	NA	NA
UHGV-0116800_22	Pfam	PF20536	NA	DUF6751
UHGV-0116800_22	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0116800_23	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0116800_23	UniRef90	UniRef90_UPI00093128B4	minor capsid protein	NA
UHGV-0116800_23	eggNOG-mapper	411462.DORLON_00783	NA	NA
UHGV-0116800_23	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0116800_23	Structural annotation	PF11114	NA	NA
UHGV-0116800_24	PHROG	phrog_3266	tail completion	connector
UHGV-0116800_24	eggNOG-mapper	411461.DORFOR_00740	NA	NA
UHGV-0116800_24	Structural annotation	PF12691	NA	NA
UHGV-0116800_25	PHROG	phrog_3099	NA	unknown function
UHGV-0116800_25	eggNOG-mapper	411462.DORLON_00781	NA	NA
UHGV-0116800_25	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0116800_26	PHROG	phrog_4450	NA	unknown function
UHGV-0116800_26	UniRef90	UniRef90_A0A355D9Y6	AP endonuclease	NA
UHGV-0116800_26	eggNOG-mapper	641112.ACOK01000073_gene2902	NA	NA
UHGV-0116800_26	Pfam	PF20378	NA	DUF6673
UHGV-0116800_26	Structural annotation	PF20378	NA	NA
UHGV-0116800_27	PHROG	phrog_706	NA	unknown function
UHGV-0116800_27	UniRef90	UniRef90_R6NIL0	Bacteriophage Gp15 protein	NA
UHGV-0116800_27	eggNOG-mapper	658655.HMPREF0988_02553	Bacteriophage Gp15 protein	NA
UHGV-0116800_27	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0116800_27	Structural annotation	PF06854	NA	NA
UHGV-0116800_28	eggNOG-mapper	411468.CLOSCI_02407	NA	NA
UHGV-0116800_28	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0116800_29	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0116800_29	eggNOG-mapper	658655.HMPREF0988_02552	Phage tail tape measure protein, TP901 family	NA
UHGV-0116800_29	COG	COG1511	NA	NA
UHGV-0116800_30	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0116800_30	UniRef90	UniRef90_A0A2T3F018	MtfA protein	NA
UHGV-0116800_30	eggNOG-mapper	1235799.C818_04232	phage tail	NA
UHGV-0116800_30	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0116800_30	COG	COG4722	Phage-related protein YomH	NA
UHGV-0116800_30	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0116800_31	PHROG	phrog_3558	tail protein	tail
UHGV-0116800_31	UniRef90	UniRef90_A0A1Y4R3H1	Prophage_tail domain-containing protein	NA
UHGV-0116800_31	eggNOG-mapper	1304866.K413DRAFT_1236	Phage minor structural protein, N-terminal	NA
UHGV-0116800_31	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0116800_31	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0116800_31	COG	COG4926	Phage-related protein	NA
UHGV-0116800_31	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0116800_32	PHROG	phrog_25888	NA	unknown function
UHGV-0116800_32	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0116800_33	PHROG	phrog_16164	NA	unknown function
UHGV-0116800_33	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA
UHGV-0116800_33	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0116800_34	eggNOG-mapper	742733.HMPREF9469_00973	NA	NA
UHGV-0116800_34	Structural annotation	PF12733, COG2372	NA	NA
UHGV-0116800_35	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0116800_35	PHROG	phrog_819	tail protein	tail
UHGV-0116800_35	UniRef90	UniRef90_A0A6N2UUB4	Collagen triple helix repeat (20 copies)	NA
UHGV-0116800_35	eggNOG-mapper	290402.Cbei_3387	NA	NA
UHGV-0116800_35	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0116800_39	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0116800_39	PHROG	phrog_1	integrase	integration and excision
UHGV-0116800_39	UniRef90	UniRef90_A0A416L1N4	Integrase	NA
UHGV-0116800_39	eggNOG-mapper	610130.Closa_3343	Belongs to the 'phage' integrase family	NA
UHGV-0116800_39	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0116800_39	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0116800_39	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0116800_39	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0116800_41	PHROG	phrog_199	holin	lysis
UHGV-0116800_41	UniRef90	UniRef90_UPI000830E190	phage holin family protein	NA
UHGV-0116800_41	eggNOG-mapper	1235793.C809_01935	Bacteriophage holin family	NA
UHGV-0116800_41	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0116800_41	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0116800_41	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0116800_41	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0116800_43	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0116800_43	PHROG	phrog_9611	endolysin	lysis
UHGV-0116800_43	UniRef90	UniRef90_UPI001B3D55E1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0116800_43	eggNOG-mapper	742733.HMPREF9469_01796	Ami_2	NA
UHGV-0116800_43	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0116800_43	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA