UHGV-0116806

Genome information

Genome length 40,836 bps

CDS count 67

Completeness 89.01% (medium-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-0116806
vOTU ID	vOTU-032678
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_275542
BioSample	SAMEA3879548
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.01% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.28
Jumbo phage	No

Genome content
Genome length	40,836 bps
GC content	52.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	89.94%
Average CDS length	551.87 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0116806_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0116806_4	PHROG	phrog_4836	CII-like regulator	transcription regulation
UHGV-0116806_4	UniRef90	UniRef90_U2R0P8	DNA-binding helix-turn-helix protein	NA
UHGV-0116806_4	eggNOG-mapper	1226322.HMPREF1545_02890	Helix-turn-helix XRE-family like proteins	NA
UHGV-0116806_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0116806_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0116806_6	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0116806_6	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0116806_6	UniRef90	UniRef90_A0A7I8D1Y4	Putative P1-type antirepressor - phage associated	NA
UHGV-0116806_6	eggNOG-mapper	1232443.BAIA02000079_gene53	AntA/AntB antirepressor	NA
UHGV-0116806_6	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0116806_6	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0116806_6	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0116806_6	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0116806_7	UniRef90	UniRef90_UPI0018AC41F1	helix-turn-helix domain-containing protein	NA
UHGV-0116806_7	eggNOG-mapper	1232443.BAIA02000078_gene38	NA	NA
UHGV-0116806_8	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0116806_8	PHROG	phrog_29775	NA	unknown function
UHGV-0116806_8	UniRef90	UniRef90_A0A1C6B5W6	Phage terminase, large subunit, PBSX family	NA
UHGV-0116806_8	eggNOG-mapper	428125.CLOLEP_01804	Phage terminase, large subunit, PBSX family	NA
UHGV-0116806_8	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0116806_8	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0116806_8	COG	COG1783	Phage terminase large subunit	NA
UHGV-0116806_8	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0116806_9	PHROG	phrog_533	portal protein	head and packaging
UHGV-0116806_9	UniRef90	UniRef90_A0A136WBU7	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0116806_9	eggNOG-mapper	642492.Clole_0815	NA	NA
UHGV-0116806_9	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0116806_10	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0116806_10	UniRef90	UniRef90_A0A1C6B625	Phage minor capsid protein 2	NA
UHGV-0116806_10	eggNOG-mapper	1449050.JNLE01000003_gene3892	Phage minor capsid protein 2	NA
UHGV-0116806_10	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0116806_10	COG	COG2369	NA	NA
UHGV-0116806_10	Structural annotation	PF06152	NA	NA
UHGV-0116806_11	PHROG	phrog_1233	NA	unknown function
UHGV-0116806_11	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0116806_11	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0116806_12	UniRef90	UniRef90_A0A1C6B5I1	Phage minor structural protein GP20	NA
UHGV-0116806_12	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0116806_12	Structural annotation	PF06810	NA	NA
UHGV-0116806_13	PHROG	phrog_544	major head protein	head and packaging
UHGV-0116806_13	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0116806_13	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0116806_13	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0116806_13	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0116806_14	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0116806_14	UniRef90	UniRef90_A0A345MKD1	Putative head-tail connector protein	NA
UHGV-0116806_15	PHROG	phrog_3366	NA	unknown function
UHGV-0116806_15	Pfam	PF20536	NA	DUF6751
UHGV-0116806_15	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0116806_16	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0116806_16	UniRef90	UniRef90_UPI001C3B04D8	Minor capsid protein	NA
UHGV-0116806_16	eggNOG-mapper	411461.DORFOR_01170	Minor capsid protein	NA
UHGV-0116806_16	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0116806_16	Structural annotation	PF11114	NA	NA
UHGV-0116806_17	PHROG	phrog_3266	tail completion	connector
UHGV-0116806_17	Structural annotation	PF12691	NA	NA
UHGV-0116806_18	PHROG	phrog_820	major tail protein	tail
UHGV-0116806_18	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-0116806_18	eggNOG-mapper	411461.DORFOR_01172	NA	NA
UHGV-0116806_18	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0116806_19	Structural annotation	PF20378	NA	NA
UHGV-0116806_20	PHROG	phrog_706	NA	unknown function
UHGV-0116806_20	UniRef90	UniRef90_A0A1C6B556	Bacteriophage Gp15 protein	NA
UHGV-0116806_20	eggNOG-mapper	1151292.QEW_4528	Bacteriophage Gp15 protein	NA
UHGV-0116806_20	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0116806_20	Structural annotation	PF06854	NA	NA
UHGV-0116806_21	PHROG	phrog_23464	NA	unknown function
UHGV-0116806_21	eggNOG-mapper	1226322.HMPREF1545_00124	Phage tail tape measure protein TP901	NA
UHGV-0116806_21	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0116806_21	Structural annotation	PF20155, TIGR02971, COG5280	NA	NA
UHGV-0116806_22	PHROG	phrog_1194	NA	unknown function
UHGV-0116806_22	eggNOG-mapper	1120998.AUFC01000030_gene2246	NA	NA
UHGV-0116806_22	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0116806_23	PHROG	phrog_32744	NA	unknown function
UHGV-0116806_23	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0116806_24	PHROG	phrog_32744	NA	unknown function
UHGV-0116806_24	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-0116806_26	UniRef90	UniRef90_UPI001C1090AB	collagen-like protein	NA
UHGV-0116806_26	eggNOG-mapper	1297617.JPJD01000099_gene2171	Collagen triple helix repeat protein	NA
UHGV-0116806_26	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0116806_26	Structural annotation	PF10651, COG5456	NA	NA
UHGV-0116806_28	PHROG	phrog_10898	NA	unknown function
UHGV-0116806_28	UniRef90	UniRef90_A0A7U3NJT3	Putative Ig-like domain-containing protein	NA
UHGV-0116806_28	eggNOG-mapper	1347368.HG964403_gene4490	S-layer homology domain	NA
UHGV-0116806_28	COG	COG4632	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	NA
UHGV-0116806_28	Structural annotation	PF19081, PF15418, MF_01905, NF032891, COG3291	NA	NA
UHGV-0116806_29	Structural annotation	PF16408, NF033510	NA	NA
UHGV-0116806_30	Structural annotation	PF21722	NA	NA
UHGV-0116806_31	PHROG	phrog_27545	NA	unknown function
UHGV-0116806_31	eggNOG-mapper	742738.HMPREF9460_00363	NA	NA
UHGV-0116806_32	eggNOG-mapper	1226322.HMPREF1545_02881	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0116806_32	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0116806_32	Structural annotation	PF10395, MF_03008, NF000096, COG4692	NA	NA
UHGV-0116806_33	PHROG	phrog_22773	NA	unknown function
UHGV-0116806_33	UniRef90	UniRef90_G9YP62	Toxin-antitoxin system, toxin component domain protein	NA
UHGV-0116806_33	eggNOG-mapper	742738.HMPREF9460_03965	NA	NA
UHGV-0116806_34	PHROG	phrog_2310	NA	unknown function
UHGV-0116806_35	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0116806_35	PHROG	phrog_18955	NA	unknown function
UHGV-0116806_35	UniRef90	UniRef90_A0A1C7FQI4	MurNAc-LAA domain-containing protein	NA
UHGV-0116806_35	eggNOG-mapper	1226322.HMPREF1545_00782	NA	NA
UHGV-0116806_35	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0116806_35	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0116806_35	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0116806_35	Structural annotation	PF01520, PF09992, MF_00417, TIGR02883, COG0860, COG4632	NA	NA
UHGV-0116806_36	PHROG	phrog_1129	holin	lysis
UHGV-0116806_36	UniRef90	UniRef90_A0A1C7FPV3	Enolase	NA
UHGV-0116806_36	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0116806_36	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0116806_36	Structural annotation	PF06946	NA	NA
UHGV-0116806_37	PHROG	phrog_4105	NA	unknown function
UHGV-0116806_37	eggNOG-mapper	537013.CLOSTMETH_01753	NA	NA
UHGV-0116806_38	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0116806_40	eggNOG-mapper	445972.ANACOL_01878	NA	NA
UHGV-0116806_42	PHROG	phrog_16490	NA	unknown function
UHGV-0116806_42	eggNOG-mapper	445972.ANACOL_01880	NA	NA
UHGV-0116806_43	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0116806_44	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0116806_45	KOfam	K14059	int; integrase	NA
UHGV-0116806_45	PHROG	phrog_1	integrase	integration and excision
UHGV-0116806_45	UniRef90	UniRef90_UPI001959BD31	site-specific integrase	NA
UHGV-0116806_45	eggNOG-mapper	1378168.N510_03298	Belongs to the 'phage' integrase family	NA
UHGV-0116806_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0116806_45	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0116806_45	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0116806_46	PHROG	phrog_2384	NA	unknown function
UHGV-0116806_46	UniRef90	UniRef90_G2E734	P63C domain-containing protein	NA
UHGV-0116806_46	eggNOG-mapper	765913.ThidrDRAFT_4097	P63C domain	NA
UHGV-0116806_46	Pfam	PF10546	P63C domain	P63C
UHGV-0116806_46	Structural annotation	PF10546, COG3617	NA	NA
UHGV-0116806_47	PHROG	phrog_33872	NA	unknown function
UHGV-0116806_47	eggNOG-mapper	445972.ANACOL_01858	NA	NA
UHGV-0116806_48	KOfam	K19370	DNAJC22; DnaJ homolog subfamily C member 22	NA
UHGV-0116806_48	PHROG	phrog_10292	NA	unknown function
UHGV-0116806_48	UniRef90	UniRef90_A0A355UYQ5	TM2 domain-containing protein	NA
UHGV-0116806_48	eggNOG-mapper	1514668.JOOA01000002_gene3146	TM2 domain	NA
UHGV-0116806_48	Pfam	PF05154	TM2 domain	TM2
UHGV-0116806_48	COG	COG2314	NA	NA
UHGV-0116806_50	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0116806_50	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0116806_50	UniRef90	UniRef90_UPI001D061BC2	helix-turn-helix domain-containing protein	NA
UHGV-0116806_50	eggNOG-mapper	1235797.C816_03553	DNA-binding helix-turn-helix protein	NA
UHGV-0116806_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0116806_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0116806_50	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0116806_54	eggNOG-mapper	742738.HMPREF9460_00848	NA	NA
UHGV-0116806_54	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0116806_56	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0116806_56	PHROG	phrog_9562	NA	unknown function
UHGV-0116806_56	UniRef90	UniRef90_A0A6N3FDD3	Pentapeptide repeats (8 copies)	NA
UHGV-0116806_56	eggNOG-mapper	1232443.BAIA02000078_gene49	Pentapeptide repeat protein	NA
UHGV-0116806_56	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0116806_56	Pfam	PF19062	NA	DUF5758
UHGV-0116806_56	COG	COG1357	NA	NA
UHGV-0116806_56	Structural annotation	PF19062, PF13599, NF033086, COG1357	NA	NA
UHGV-0116806_58	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0116806_58	UniRef90	UniRef90_A0A1C5N4H2	Siphovirus Gp157	NA
UHGV-0116806_58	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0116806_58	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0116806_58	Structural annotation	PF05565	NA	NA
UHGV-0116806_59	PHROG	phrog_14970	NA	unknown function
UHGV-0116806_59	UniRef90	UniRef90_UPI0011AF792D	Rad52/Rad22 family DNA repair protein	NA
UHGV-0116806_59	eggNOG-mapper	411469.EUBHAL_02677	double-strand break repair protein	NA
UHGV-0116806_59	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0116806_59	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0116806_59	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0116806_60	PHROG	phrog_1389	NA	unknown function
UHGV-0116806_60	eggNOG-mapper	1347392.CCEZ01000060_gene3269	NA	NA
UHGV-0116806_60	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0116806_61	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0116806_61	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0116806_61	UniRef90	UniRef90_A0A1C7FSG7	Single-stranded DNA-binding protein	NA
UHGV-0116806_61	eggNOG-mapper	445972.ANACOL_00151	Single-stranded DNA-binding protein	NA
UHGV-0116806_61	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0116806_61	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0116806_61	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0116806_61	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0116806_61	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0116806_62	PHROG	phrog_15768	NA	unknown function
UHGV-0116806_62	UniRef90	UniRef90_A0A1H8R574	Helix-turn-helix domain-containing protein	NA
UHGV-0116806_62	eggNOG-mapper	1158294.JOMI01000001_gene1618	NA	NA
UHGV-0116806_62	Structural annotation	PF04492, MF_01177, NF041413, COG5625	NA	NA
UHGV-0116806_63	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0116806_63	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0116806_63	UniRef90	UniRef90_A0A1C7FRV3	SF4 helicase domain-containing protein	NA
UHGV-0116806_63	eggNOG-mapper	1378168.N510_01441	NA	NA
UHGV-0116806_63	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0116806_63	COG	COG0305	Replicative DNA helicase	NA
UHGV-0116806_63	Structural annotation	PF03796, MF_04154, NF006606, COG0467	NA	NA
UHGV-0116806_65	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0116806_65	UniRef90	UniRef90_A0A6A8VJ62	NA	NA
UHGV-0116806_65	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0116806_65	Pfam	PF06356	NA	DUF1064
UHGV-0116806_65	Structural annotation	PF06356	NA	NA
UHGV-0116806_66	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0116806_66	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0116806_66	UniRef90	UniRef90_A0A6I2QZV1	Cytosine-specific methyltransferase	NA
UHGV-0116806_66	eggNOG-mapper	742738.HMPREF9460_04053	C-5 cytosine-specific DNA methylase	NA
UHGV-0116806_66	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0116806_66	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0116806_66	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0116806_66	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0116806_66	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0116806_67	eggNOG-mapper	742738.HMPREF9460_04054	Restriction alleviation protein Lar	NA