UHGV-0116824

Genome information

Genome length 28,229 bps

CDS count 41

Completeness 72.98% (medium-quality)

geNomad score 0.9737

Prediction confidence Confident

Genome information
Genome ID	UHGV-0116824
vOTU ID	vOTU-024354
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_276274
BioSample	SAMEA3879503
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.98% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	4
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9737
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	6.59
Jumbo phage	No

Genome content
Genome length	28,229 bps
GC content	59.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	83.96%
Average CDS length	581.85 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0116824_1	eggNOG-mapper	1235797.C816_01492	NA	NA
UHGV-0116824_3	KOfam	K14059	int; integrase	NA
UHGV-0116824_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0116824_3	UniRef90	UniRef90_A0A564U055	Transposase from transposon Tn916	NA
UHGV-0116824_3	eggNOG-mapper	748224.HMPREF9436_01375	Phage integrase family	NA
UHGV-0116824_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0116824_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0116824_3	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0116824_4	PHROG	phrog_8887	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0116824_4	UniRef90	UniRef90_UPI00195BCD4A	type II toxin-antitoxin system HicA family toxin	NA
UHGV-0116824_4	eggNOG-mapper	633697.EubceDRAFT1_2398	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0116824_4	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0116824_4	Structural annotation	COG1724	NA	NA
UHGV-0116824_5	PHROG	phrog_9151	HicB-like antitoxin	moron, auxiliary metabolic gene and host takeover
UHGV-0116824_5	UniRef90	UniRef90_UPI00195E01E3	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0116824_5	eggNOG-mapper	1392502.JNIO01000008_gene1606	protein encoded in hypervariable junctions of pilus gene clusters	NA
UHGV-0116824_5	Pfam	PF05534	HicB family	HicB
UHGV-0116824_5	COG	COG4226	Predicted nuclease of the RNAse H fold, HicB family	NA
UHGV-0116824_5	Structural annotation	PF21748, PF07878, NF041264, COG4226	NA	NA
UHGV-0116824_7	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0116824_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0116824_7	UniRef90	UniRef90_A0A564TXA0	HTH-type transcriptional regulator ImmR	NA
UHGV-0116824_7	eggNOG-mapper	760568.Desku_1400	sequence-specific DNA binding	NA
UHGV-0116824_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0116824_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0116824_7	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0116824_9	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0116824_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0116824_9	UniRef90	UniRef90_A0A564TH61	HTH-type transcriptional regulator ImmR	NA
UHGV-0116824_9	eggNOG-mapper	665956.HMPREF1032_04076	Peptidase S24-like	NA
UHGV-0116824_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0116824_9	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0116824_9	Structural annotation	PF13560, MF_02017, NF041951, COG1396	NA	NA
UHGV-0116824_10	UniRef90	UniRef90_A0A564THJ6	Helix-turn-helix domain protein	NA
UHGV-0116824_10	eggNOG-mapper	445972.ANACOL_00136	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0116824_10	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0116824_10	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0116824_12	Structural annotation	PF20385, NF040556	NA	NA
UHGV-0116824_13	UniRef90	UniRef90_UPI000A0213FB	helix-turn-helix domain-containing protein	NA
UHGV-0116824_13	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0116824_14	PHROG	phrog_5079	NA	unknown function
UHGV-0116824_14	eggNOG-mapper	1029718.SFBM_1171	NA	NA
UHGV-0116824_15	eggNOG-mapper	1232443.BAIA02000032_gene1908	NA	NA
UHGV-0116824_15	AcrCatalog	cluster_195449	NA	NA
UHGV-0116824_16	PHROG	phrog_3777	NA	unknown function
UHGV-0116824_16	UniRef90	UniRef90_UPI00130E0E41	NA	NA
UHGV-0116824_16	Pfam	PF12957	NA	DUF3846
UHGV-0116824_16	Structural annotation	PF12957	NA	NA
UHGV-0116824_17	UniRef90	UniRef90_A0A3E2U472	DNA-binding protein	NA
UHGV-0116824_17	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0116824_17	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0116824_17	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0116824_20	PHROG	phrog_24484	NA	unknown function
UHGV-0116824_23	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0116824_23	eggNOG-mapper	525255.HMPREF0077_0972	NA	NA
UHGV-0116824_23	Structural annotation	PF21578, NF033538	NA	NA
UHGV-0116824_24	UniRef90	UniRef90_A0A844DP33	SqdX protein	NA
UHGV-0116824_24	Structural annotation	PF06530, MF_00674, TIGR01637, COG1342	NA	NA
UHGV-0116824_26	UniRef90	UniRef90_UPI00195E9406	transposase	NA
UHGV-0116824_26	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0116824_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0116824_27	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0116824_27	UniRef90	UniRef90_A0A329UJ95	Terminase-like family protein	NA
UHGV-0116824_27	eggNOG-mapper	748224.HMPREF9436_01395	Terminase-like family	NA
UHGV-0116824_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0116824_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0116824_27	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0116824_28	PHROG	phrog_156	portal protein	head and packaging
UHGV-0116824_28	eggNOG-mapper	748224.HMPREF9436_01396	NA	NA
UHGV-0116824_28	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0116824_30	KOfam	K07584	NA	NA
UHGV-0116824_30	PHROG	phrog_13908	NA	unknown function
UHGV-0116824_30	UniRef90	UniRef90_A0A174CZ20	Predicted ribosomal protein	NA
UHGV-0116824_30	eggNOG-mapper	748224.HMPREF9436_01398	Cysteine protease Prp	NA
UHGV-0116824_30	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0116824_30	COG	COG2868	NA	NA
UHGV-0116824_30	Structural annotation	PF04327, NF011133, COG2868	NA	NA
UHGV-0116824_31	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0116824_31	UniRef90	UniRef90_A0A844DTU7	N4-gp56 family major capsid protein	NA
UHGV-0116824_31	eggNOG-mapper	748224.HMPREF9436_01399	NA	NA
UHGV-0116824_31	Pfam	PF13252	NA	DUF4043
UHGV-0116824_31	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0116824_31	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0116824_32	PHROG	phrog_15239	NA	unknown function
UHGV-0116824_33	PHROG	phrog_12105	NA	unknown function
UHGV-0116824_34	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0116824_34	eggNOG-mapper	748224.HMPREF9436_01402	NA	NA
UHGV-0116824_34	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0116824_35	UniRef90	UniRef90_A0A329TFM2	Rho-GAP domain-containing protein	NA
UHGV-0116824_36	eggNOG-mapper	748224.HMPREF9436_01404	lysozyme activity	NA
UHGV-0116824_36	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0116824_37	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0116824_37	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0116824_37	UniRef90	UniRef90_A0A329TU28	HicB family protein	NA
UHGV-0116824_37	eggNOG-mapper	718252.FP2_04880	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0116824_37	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0116824_37	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0116824_37	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0116824_38	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0116824_38	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0116824_38	Structural annotation	MF_02066	NA	NA
UHGV-0116824_39	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0116824_39	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0116824_39	UniRef90	UniRef90_A0A564U069	HicB-like domain-containing protein	NA
UHGV-0116824_39	eggNOG-mapper	1235792.C808_03055	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0116824_39	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0116824_39	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0116824_40	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0116824_40	UniRef90	UniRef90_A0A564U088	YcfA-like protein	NA
UHGV-0116824_40	eggNOG-mapper	1235792.C808_03054	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0116824_40	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0116824_40	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0116824_40	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0116824_41	eggNOG-mapper	748224.HMPREF9436_01406	NA	NA