UHGV-0116949

Genome information

Genome length 38,596 bps

CDS count 60

Completeness 87.22% (medium-quality)

geNomad score 0.9689

Prediction confidence Confident

Genome information
Genome ID	UHGV-0116949
vOTU ID	vOTU-015417
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_301982
BioSample	NA
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.22% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9689
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.92
Jumbo phage	No

Genome content
Genome length	38,596 bps
GC content	39.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	91.35%
Average CDS length	590.90 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0116949_1	UniRef90	UniRef90_UPI00189D970F	NA	NA
UHGV-0116949_1	eggNOG-mapper	240302.BN982_00196	NA	NA
UHGV-0116949_1	Structural annotation	PF15931, MF_00194, NF001460, COG2974	NA	NA
UHGV-0116949_2	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0116949_2	PHROG	phrog_435	endolysin	lysis
UHGV-0116949_2	UniRef90	UniRef90_UPI000E552B56	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0116949_2	eggNOG-mapper	1283341.Q24LG3_BPPCD	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0116949_2	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0116949_2	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0116949_3	PHROG	phrog_443	holin	lysis
UHGV-0116949_3	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-0116949_3	eggNOG-mapper	1235802.C823_05612	Putative lactococcus lactis phage r1t holin	NA
UHGV-0116949_3	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0116949_3	Structural annotation	PF16945	NA	NA
UHGV-0116949_4	PHROG	phrog_1863	NA	unknown function
UHGV-0116949_4	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-0116949_6	eggNOG-mapper	1235792.C808_03832	Belongs to the 'phage' integrase family	NA
UHGV-0116949_6	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0116949_8	PHROG	phrog_18725	NA	unknown function
UHGV-0116949_8	eggNOG-mapper	1120746.CCNL01000014_gene2212	NA	NA
UHGV-0116949_8	Structural annotation	PF13754, COG2372	NA	NA
UHGV-0116949_9	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0116949_9	PHROG	phrog_11157	NA	unknown function
UHGV-0116949_9	UniRef90	UniRef90_A0A416HMQ3	Big_13 domain-containing protein	NA
UHGV-0116949_9	eggNOG-mapper	1286171.EAL2_c11220	amine dehydrogenase activity	NA
UHGV-0116949_9	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0116949_9	COG	COG3391	DNA-binding beta-propeller fold protein YncE	NA
UHGV-0116949_9	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0116949_11	PHROG	phrog_13879	NA	unknown function
UHGV-0116949_11	eggNOG-mapper	1232449.BAHV02000010_gene2725	NA	NA
UHGV-0116949_11	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0116949_12	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0116949_13	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0116949_13	UniRef90	UniRef90_A0A173WM72	Phage-related protein	NA
UHGV-0116949_13	eggNOG-mapper	411902.CLOBOL_00126	NA	NA
UHGV-0116949_13	COG	COG5283	Phage-related tail protein	NA
UHGV-0116949_14	PHROG	phrog_706	NA	unknown function
UHGV-0116949_14	UniRef90	UniRef90_UPI0011DC8B0C	Gp15 family bacteriophage protein	NA
UHGV-0116949_14	eggNOG-mapper	411902.CLOBOL_00127	NA	NA
UHGV-0116949_14	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0116949_14	Structural annotation	PF06854	NA	NA
UHGV-0116949_15	PHROG	phrog_11299	NA	unknown function
UHGV-0116949_15	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0116949_15	Structural annotation	PF10666	NA	NA
UHGV-0116949_16	PHROG	phrog_3099	NA	unknown function
UHGV-0116949_16	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-0116949_16	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0116949_17	PHROG	phrog_3266	tail completion	connector
UHGV-0116949_17	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0116949_17	Structural annotation	PF12691	NA	NA
UHGV-0116949_18	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0116949_18	UniRef90	UniRef90_UPI0008B4CFF0	minor capsid protein	NA
UHGV-0116949_18	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0116949_18	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0116949_18	Structural annotation	PF11114	NA	NA
UHGV-0116949_19	PHROG	phrog_3366	NA	unknown function
UHGV-0116949_19	eggNOG-mapper	33035.JPJF01000106_gene3129	NA	NA
UHGV-0116949_19	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0116949_20	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0116949_20	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0116949_21	PHROG	phrog_283	major head protein	head and packaging
UHGV-0116949_21	UniRef90	UniRef90_A0A316RCU2	P22 coat protein	NA
UHGV-0116949_21	eggNOG-mapper	1297617.JPJD01000059_gene2633	P22 coat protein - gene protein 5	NA
UHGV-0116949_21	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0116949_21	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0116949_22	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0116949_22	eggNOG-mapper	1125725.HMPREF1325_1331	Phage minor structural protein GP20	NA
UHGV-0116949_23	UniRef90	UniRef90_A0A6L5YME3	Conjugal transfer protein	NA
UHGV-0116949_23	eggNOG-mapper	1235835.C814_02704	Cysteine-rich KTR	NA
UHGV-0116949_23	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0116949_23	Structural annotation	PF14205, COG4416	NA	NA
UHGV-0116949_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0116949_24	UniRef90	UniRef90_A0A412EKN3	Phage capsid protein	NA
UHGV-0116949_24	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0116949_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0116949_24	COG	COG2369	NA	NA
UHGV-0116949_24	Structural annotation	PF06152	NA	NA
UHGV-0116949_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0116949_25	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0116949_25	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0116949_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0116949_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0116949_26	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0116949_26	UniRef90	UniRef90_UPI000E54849E	PBSX family phage terminase large subunit	NA
UHGV-0116949_26	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0116949_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0116949_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0116949_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0116949_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0116949_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0116949_26	Structural annotation	PF04466, PF17288, PF06056, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0116949_27	PHROG	phrog_33130	NA	unknown function
UHGV-0116949_27	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0116949_27	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0116949_29	PHROG	phrog_9479	NA	unknown function
UHGV-0116949_29	UniRef90	UniRef90_A0A2N0UXN8	Ntox24 domain-containing protein	NA
UHGV-0116949_29	Structural annotation	PF15529	NA	NA
UHGV-0116949_31	PHROG	phrog_8680	NA	unknown function
UHGV-0116949_31	UniRef90	UniRef90_A0A3R6K733	NA	NA
UHGV-0116949_31	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0116949_31	Pfam	PF14386	NA	DUF4417
UHGV-0116949_31	Structural annotation	PF14386	NA	NA
UHGV-0116949_33	KOfam	K03040	rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]	NA
UHGV-0116949_33	UniRef90	UniRef90_R7QYD6	DNA-directed RNA polymerase subunit alpha	NA
UHGV-0116949_33	eggNOG-mapper	1541959.KQ51_00203	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	NA
UHGV-0116949_33	Pfam	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain	RNA_pol_A_CTD
UHGV-0116949_33	COG	COG0202	DNA-directed RNA polymerase, alpha subunit/40 kD subunit	NA
UHGV-0116949_33	Structural annotation	PF03118, NF005841	NA	NA
UHGV-0116949_35	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0116949_35	UniRef90	UniRef90_A0A3R6HC40	HNH endonuclease	NA
UHGV-0116949_35	eggNOG-mapper	742740.HMPREF9474_03129	HNH endonuclease	NA
UHGV-0116949_35	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0116949_35	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0116949_35	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0116949_36	PHROG	phrog_1672	NA	unknown function
UHGV-0116949_37	UniRef90	UniRef90_A0A412FGX2	OrfB_Zn_ribbon domain-containing protein	NA
UHGV-0116949_37	Pfam	PF08271	TFIIB zinc-binding	TF_Zn_Ribbon
UHGV-0116949_38	PHROG	phrog_625	NA	unknown function
UHGV-0116949_38	UniRef90	UniRef90_UPI0015F9766F	ASCH domain-containing protein	NA
UHGV-0116949_38	eggNOG-mapper	411463.EUBVEN_00477	NA	NA
UHGV-0116949_40	Structural annotation	PF09889, COG4068	NA	NA
UHGV-0116949_41	UniRef90	UniRef90_UPI00164A90AD	HNH endonuclease	NA
UHGV-0116949_41	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0116949_42	PHROG	phrog_15077	NA	unknown function
UHGV-0116949_42	UniRef90	UniRef90_A0A174WLY0	NA	NA
UHGV-0116949_42	eggNOG-mapper	483218.BACPEC_01165	NA	NA
UHGV-0116949_42	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0116949_43	PHROG	phrog_8470	NA	unknown function
UHGV-0116949_43	UniRef90	UniRef90_UPI000E4BB21C	PcfJ domain-containing protein	NA
UHGV-0116949_43	eggNOG-mapper	411459.RUMOBE_01776	NA	NA
UHGV-0116949_43	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0116949_43	Structural annotation	PF14284	NA	NA
UHGV-0116949_44	PHROG	phrog_4433	NA	unknown function
UHGV-0116949_44	eggNOG-mapper	742733.HMPREF9469_00220	regulation of DNA-templated transcription, elongation	NA
UHGV-0116949_44	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0116949_44	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0116949_45	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-0116949_46	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0116949_46	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0116949_46	UniRef90	UniRef90_A0A1Q6KIM6	RNase H type-1 domain-containing protein	NA
UHGV-0116949_46	eggNOG-mapper	1120963.KB894491_gene1009	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0116949_46	Pfam	PF00075	RNase H	RNase_H
UHGV-0116949_46	COG	COG0328	Ribonuclease HI	NA
UHGV-0116949_46	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0116949_47	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0116949_47	eggNOG-mapper	411459.RUMOBE_00953	NA	NA
UHGV-0116949_47	Structural annotation	PF01446	NA	NA
UHGV-0116949_50	Structural annotation	PF07408, MF_01560, TIGR00029, COG0268	NA	NA
UHGV-0116949_57	UniRef90	UniRef90_R6WAU3	HTH cro/C1-type domain-containing protein	NA
UHGV-0116949_57	eggNOG-mapper	411461.DORFOR_00030	Helix-turn-helix XRE-family like proteins	NA
UHGV-0116949_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0116949_57	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0116949_58	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0116949_58	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0116949_58	UniRef90	UniRef90_A0A0V8QJ63	HTH cro/C1-type domain-containing protein	NA
UHGV-0116949_58	eggNOG-mapper	1235793.C809_01937	Peptidase S24-like	NA
UHGV-0116949_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0116949_58	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0116949_58	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0116949_58	Structural annotation	PF00717, PF01381, MF_00015, NF007621, NF041951, COG2932	NA	NA
UHGV-0116949_59	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0116949_59	PHROG	phrog_19856	NA	unknown function
UHGV-0116949_59	UniRef90	UniRef90_A0A143XQ54	DNA translocase FtsK	NA
UHGV-0116949_59	eggNOG-mapper	1235790.C805_00010	Restriction endonuclease	NA
UHGV-0116949_59	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0116949_59	Pfam	PF09397	Ftsk gamma domain	FtsK_gamma
UHGV-0116949_59	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0116949_59	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0116949_60	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0116949_60	PHROG	phrog_95	integrase	integration and excision
UHGV-0116949_60	UniRef90	UniRef90_C7GC54	Resolvase, N-terminal domain protein	NA
UHGV-0116949_60	eggNOG-mapper	1256908.HMPREF0373_00206	Resolvase, N terminal domain	NA
UHGV-0116949_60	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0116949_60	Pfam	PF07508	Recombinase	Recombinase
UHGV-0116949_60	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0116949_60	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA