UHGV-0116954

Genome information

Genome length 28,579 bps

CDS count 48

Completeness 81.94% (medium-quality)

geNomad score 0.9740

Prediction confidence Confident

Genome information
Genome ID	UHGV-0116954
vOTU ID	vOTU-042323
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_287519
BioSample	SAMEA4378241
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.94% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9740
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.02
Jumbo phage	No

Genome content
Genome length	28,579 bps
GC content	56.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	90.65%
Average CDS length	544.38 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0116954_1	KOfam	K14059	int; integrase	NA
UHGV-0116954_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0116954_1	UniRef90	UniRef90_UPI0019577F44	site-specific integrase	NA
UHGV-0116954_1	eggNOG-mapper	1007096.BAGW01000023_gene159	Phage integrase family	NA
UHGV-0116954_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0116954_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0116954_2	eggNOG-mapper	445971.ANASTE_01587	Belongs to the 'phage' integrase family	NA
UHGV-0116954_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0116954_3	eggNOG-mapper	649831.L083_0393	NA	NA
UHGV-0116954_3	Structural annotation	PF16900, NF040991	NA	NA
UHGV-0116954_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0116954_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0116954_4	UniRef90	UniRef90_UPI001D0E173A	helix-turn-helix domain-containing protein	NA
UHGV-0116954_4	eggNOG-mapper	411473.RUMCAL_03095	NA	NA
UHGV-0116954_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0116954_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0116954_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0116954_4	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0116954_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0116954_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0116954_5	UniRef90	UniRef90_A0A367GFH2	Transcriptional regulator	NA
UHGV-0116954_5	eggNOG-mapper	1235798.C817_01509	Helix-turn-helix XRE-family like proteins	NA
UHGV-0116954_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0116954_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0116954_5	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0116954_7	Structural annotation	PF15582, MF_00791, NF041178, COG2847	NA	NA
UHGV-0116954_9	UniRef90	UniRef90_A0A396LZ12	NA	NA
UHGV-0116954_9	Pfam	PF12957	NA	DUF3846
UHGV-0116954_9	Structural annotation	PF12957	NA	NA
UHGV-0116954_10	eggNOG-mapper	1519439.JPJG01000059_gene1909	NA	NA
UHGV-0116954_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0116954_13	Structural annotation	PF07875, TIGR02501	NA	NA
UHGV-0116954_18	Structural annotation	NF033787	NA	NA
UHGV-0116954_19	Structural annotation	PF06378, COG4712	NA	NA
UHGV-0116954_20	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0116954_20	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0116954_20	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0116954_22	PHROG	phrog_7566	NA	unknown function
UHGV-0116954_22	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0116954_23	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0116954_23	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0116954_23	UniRef90	UniRef90_A0A564SCM1	Single-stranded DNA-binding protein	NA
UHGV-0116954_23	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-0116954_23	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0116954_23	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0116954_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0116954_23	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0116954_23	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0116954_24	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0116954_24	UniRef90	UniRef90_A0A3E2U1Y3	Helix-turn-helix domain-containing protein	NA
UHGV-0116954_24	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0116954_24	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0116954_24	Structural annotation	PF05584, MF_01819, TIGR01610, COG5625	NA	NA
UHGV-0116954_25	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0116954_25	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0116954_25	UniRef90	UniRef90_A0A3E2U3E3	DNA helicase	NA
UHGV-0116954_25	eggNOG-mapper	411471.SUBVAR_05838	Participates in initiation and elongation during chromosome replication	NA
UHGV-0116954_25	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0116954_25	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0116954_25	COG	COG0305	Replicative DNA helicase	NA
UHGV-0116954_25	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0116954_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0116954_28	UniRef90	UniRef90_A0A3E2U224	Sigma70_r4_2 domain-containing protein	NA
UHGV-0116954_28	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-0116954_28	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0116954_29	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0116954_29	UniRef90	UniRef90_UPI0015F33F36	HNH endonuclease	NA
UHGV-0116954_29	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-0116954_29	Structural annotation	PF01844	NA	NA
UHGV-0116954_30	UniRef90	UniRef90_R6GFM0	Conserved domain protein	NA
UHGV-0116954_30	Structural annotation	PF19962	NA	NA
UHGV-0116954_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0116954_31	UniRef90	UniRef90_UPI001F1A3C47	terminase large subunit	NA
UHGV-0116954_31	eggNOG-mapper	748224.HMPREF9436_01467	phage terminase, large subunit	NA
UHGV-0116954_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0116954_31	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0116954_32	PHROG	phrog_104	portal protein	head and packaging
UHGV-0116954_32	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0116954_33	PHROG	phrog_104	portal protein	head and packaging
UHGV-0116954_33	UniRef90	UniRef90_A0A3E2U200	Phage portal protein	NA
UHGV-0116954_33	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0116954_33	Structural annotation	PF05133, MF_04135, TIGR01538, COG4695	NA	NA
UHGV-0116954_34	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0116954_34	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-0116954_34	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0116954_34	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0116954_34	Structural annotation	PF20344	NA	NA
UHGV-0116954_36	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0116954_36	UniRef90	UniRef90_D4K444	Phage minor structural protein GP20	NA
UHGV-0116954_36	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-0116954_36	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0116954_36	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0116954_37	PHROG	phrog_267	major head protein	head and packaging
UHGV-0116954_37	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0116954_37	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-0116954_37	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0116954_38	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0116954_38	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0116954_38	eggNOG-mapper	762211.BSTEL_0628	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0116954_38	Structural annotation	PF09355	NA	NA
UHGV-0116954_39	PHROG	phrog_501	head closure Hc1	connector
UHGV-0116954_39	UniRef90	UniRef90_A0A139QHM6	Phage-associated protein	NA
UHGV-0116954_39	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-0116954_39	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0116954_40	PHROG	phrog_387	neck protein	connector
UHGV-0116954_40	UniRef90	UniRef90_A0A4U9XLC1	NA	NA
UHGV-0116954_40	eggNOG-mapper	748224.HMPREF9436_00694	NA	NA
UHGV-0116954_41	PHROG	phrog_123	tail terminator	connector
UHGV-0116954_41	eggNOG-mapper	748224.HMPREF9436_00695	NA	NA
UHGV-0116954_41	Structural annotation	PF06141	NA	NA
UHGV-0116954_42	PHROG	phrog_117	major tail protein	tail
UHGV-0116954_42	UniRef90	UniRef90_E2ZGB2	Prophage LambdaSa1, structural protein	NA
UHGV-0116954_42	eggNOG-mapper	748224.HMPREF9436_00696	domain, Protein	NA
UHGV-0116954_42	COG	COG5492	NA	NA
UHGV-0116954_42	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0116954_43	PHROG	phrog_1526	NA	unknown function
UHGV-0116954_43	eggNOG-mapper	875454.BAEW01000017_gene1589	NA	NA
UHGV-0116954_44	Structural annotation	PF17318	NA	NA
UHGV-0116954_45	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0116954_45	eggNOG-mapper	748224.HMPREF9436_00699	Phage tail tape measure protein, TP901 family	NA
UHGV-0116954_45	COG	COG1511	NA	NA
UHGV-0116954_46	PHROG	phrog_36410	NA	unknown function
UHGV-0116954_46	UniRef90	UniRef90_A0A564T4N7	Phage tail protein	NA
UHGV-0116954_46	eggNOG-mapper	748224.HMPREF9436_00700	Phage tail protein	NA
UHGV-0116954_46	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0116954_47	PHROG	phrog_538	minor tail protein	tail
UHGV-0116954_47	UniRef90	UniRef90_A0A4U7JBL2	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0116954_47	eggNOG-mapper	755731.Clo1100_0557	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0116954_47	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0116954_47	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0116954_48	PHROG	phrog_9534	head protein	head and packaging
UHGV-0116954_48	UniRef90	UniRef90_E2ELJ8	Truncated putative phage structural protein	NA
UHGV-0116954_48	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0116954_48	Structural annotation	PF20747	NA	NA